Cmc11g0302341.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0302341.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr11: 23252348 .. 23252743 (-)
Sequence length	396
RNA-Seq Expression	Cmc11g0302341.1
Synteny	Cmc11g0302341.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAAGAAATAGAAGCTATGGAAAGAACGAATACATGGACCATTGTTTCCTTCCCAAAAGATCATCACACCGTTGGTAGTAAATGGGTGTACAAGGTGAAGTGTAAACTGGATGGCACCATTGATAGATACAAGGCAAGACTTGTAGCAAAGGGCTATAATCAACAAGAAGGGATAGATTTTTTAGATACCTTCTCACTAGTGGCTAAAATAGTTACTGTTAAGATATTCTTAGCTCTTGCTACATCCTATAATTGGTCTTTTACCCAAATGGACATAAATAATGTCTTCTTAAATGGAGAATTGTTTGAAGAAGTGCACATGTCCTTACCTTTGGGCTACCAAACTTCTCAAAGTACCAAGAAAAGGAGAAAGATTGGCTTGCAAACTTAA

mRNA sequence

ATGGCTAAAGAAATAGAAGCTATGGAAAGAACGAATACATGGACCATTGTTTCCTTCCCAAAAGATCATCACACCGTTGGTAGTAAATGGGTGTACAAGGTGAAGTGTAAACTGGATGGCACCATTGATAGATACAAGGCAAGACTTGTAGCAAAGGGCTATAATCAACAAGAAGGGATAGATTTTTTAGATACCTTCTCACTAGTGGCTAAAATAGTTACTGTTAAGATATTCTTAGCTCTTGCTACATCCTATAATTGGTCTTTTACCCAAATGGACATAAATAATGTCTTCTTAAATGGAGAATTGTTTGAAGAAGTGCACATGTCCTTACCTTTGGGCTACCAAACTTCTCAAAGTACCAAGAAAAGGAGAAAGATTGGCTTGCAAACTTAA

Coding sequence (CDS)

ATGGCTAAAGAAATAGAAGCTATGGAAAGAACGAATACATGGACCATTGTTTCCTTCCCAAAAGATCATCACACCGTTGGTAGTAAATGGGTGTACAAGGTGAAGTGTAAACTGGATGGCACCATTGATAGATACAAGGCAAGACTTGTAGCAAAGGGCTATAATCAACAAGAAGGGATAGATTTTTTAGATACCTTCTCACTAGTGGCTAAAATAGTTACTGTTAAGATATTCTTAGCTCTTGCTACATCCTATAATTGGTCTTTTACCCAAATGGACATAAATAATGTCTTCTTAAATGGAGAATTGTTTGAAGAAGTGCACATGTCCTTACCTTTGGGCTACCAAACTTCTCAAAGTACCAAGAAAAGGAGAAAGATTGGCTTGCAAACTTAA

Protein sequence

MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGIDFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQSTKKRRKIGLQT

Homology

[Close]

BLAST of Cmc11g0302341.1 vs. NCBI nr
Match: XP_016901937.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo])

HSP 1 Score: 267.3 bits (682), Expect = 6.9e-68
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI
Sbjct: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120
           DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS
Sbjct: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120

Query: 121 TKKRRKIGLQT 132
           TKKRRKIGLQT
Sbjct: 121 TKKRRKIGLQT 131

[Close]

BLAST of Cmc11g0302341.1 vs. NCBI nr
Match: KAA0043630.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa] >TYK09733.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52
Identity = 105/127 (82.68%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           MA+EIEAMERTNTWTIVS PK++HTVGSKWVYKVK K  GT+DRYKARL+AKGYNQQEGI
Sbjct: 297 MAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYNQQEGI 356

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120
           DF DTFSLVAKIVTVKIFLAL  SYNWSFTQMDINN FLNG+LFEEV MSLPLGYQTSQ 
Sbjct: 357 DFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLGYQTSQV 416

Query: 121 TKKRRKI 128
            +   K+
Sbjct: 417 PRNGEKL 423

[Close]

BLAST of Cmc11g0302341.1 vs. NCBI nr
Match: KAA0038364.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ97031.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 3.1e-52
Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           MAKEIEAMERTNTW +VS  KDHH VG KWVYKVKC LDGT+DRYKARLVAKGYNQQEGI
Sbjct: 1   MAKEIEAMERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGI 60

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120
           DF D FS VAKIVTVK FLALATSYNWSF+QMDINN FLN +LFEEVHMSLPLGYQTSQ 
Sbjct: 61  DFSDIFSPVAKIVTVKTFLALATSYNWSFSQMDINNAFLNRDLFEEVHMSLPLGYQTSQV 120

Query: 121 TKKRRKIGLQ 131
             K  K+  +
Sbjct: 121 PGKGEKLACE 130

[Close]

BLAST of Cmc11g0302341.1 vs. NCBI nr
Match: XP_038879273.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 5.3e-52
Identity = 103/127 (81.10%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           MA+EIEAMERTNTWTIVS PK+HHT+GSKWVYKVK K DGT+D+YKARLVAK YNQQE I
Sbjct: 1   MAEEIEAMERTNTWTIVSLPKNHHTIGSKWVYKVKYKQDGTVDKYKARLVAKSYNQQEEI 60

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120
           DF DTFS +AKIVTVK+F ALATSYNWS TQMDINN FLNG+LFEEVHMSLPLGYQTSQ 
Sbjct: 61  DFSDTFSPIAKIVTVKVFFALATSYNWSLTQMDINNAFLNGDLFEEVHMSLPLGYQTSQV 120

Query: 121 TKKRRKI 128
             K  K+
Sbjct: 121 PWKGEKL 127

[Close]

BLAST of Cmc11g0302341.1 vs. NCBI nr
Match: KAA0046892.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa] >TYK03256.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.9e-51
Identity = 101/123 (82.11%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           M +EIEAMERTNT T+VS P +HHTVGSKWVYKVKCKL+GTI+RYKARLVAKGYNQQEG+
Sbjct: 1   MVEEIEAMERTNTLTVVSLPNNHHTVGSKWVYKVKCKLEGTINRYKARLVAKGYNQQEGV 60

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120
           DF  TFS VAKIVTVK FLA +TSYNWS TQMDINN FLNG+LFEEVHMSLPLGYQTSQ 
Sbjct: 61  DFSGTFSQVAKIVTVKTFLAFSTSYNWSLTQMDINNAFLNGDLFEEVHMSLPLGYQTSQV 120

Query: 121 TKK 124
            +K
Sbjct: 121 RQK 123

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-24
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1    MAKEIEAMERTNTWTIVSFPKDHHT-VGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEG 60
            M  EI A    +TW +V  P  H T VG +W++  K   DG+++RYKARLVAKGYNQ+ G
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   IDFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGY 116
            +D+ +TFS V K  +++I L +A   +W   Q+D+NN FL G L ++V+MS P G+
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGF 1087

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-23
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1    MAKEIEAMERTNTWTIVSFPKDHHT-VGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEG 60
            M  EI A    +TW +V  P    T VG +W++  K   DG+++RYKARLVAKGYNQ+ G
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   IDFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGY 116
            +D+ +TFS V K  +++I L +A   +W   Q+D+NN FL G L +EV+MS P G+
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGF 1070

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20
Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           M +E+E++++  T+ +V  PK    +  KWV+K+K   D  + RYKARLV KG+ Q++GI
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTS 119
           DF + FS V K+ +++  L+LA S +    Q+D+   FL+G+L EE++M  P G++ +
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVA 947

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-20
Identity = 50/111 (45.05%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 4    EIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGIDFL 63
            E+ A +  NTWTI   P++ + V S+WV+ VK    G   RYKARLVA+G+ Q+  ID+ 
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   DTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLG 115
            +TF+ VA+I + +  L+L   YN    QMD+   FLNG L EE++M LP G
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG 1023

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.8e-17
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           M +E++A+ R  TW +V  P + + +G KWV+K K   DGT+DR KARLVAKG++Q+EGI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFLDTFSLVAKIVTVKIFLALA------TSYNWSF 90
            F++T+S V +  T++  L +A       S NW F
Sbjct: 104 YFVETYSPVVRTATIRTILNVAQQLEVGQSINWMF 138

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy TrEMBL
Match: A0A1S4E133 (uncharacterized mitochondrial protein AtMg00820-like OS=Cucumis melo OX=3656 GN=LOC107991478 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.3e-68
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI
Sbjct: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120
           DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS
Sbjct: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120

Query: 121 TKKRRKIGLQT 132
           TKKRRKIGLQT
Sbjct: 121 TKKRRKIGLQT 131

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy TrEMBL
Match: A0A5A7TK43 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001520 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.2e-53
Identity = 105/127 (82.68%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           MA+EIEAMERTNTWTIVS PK++HTVGSKWVYKVK K  GT+DRYKARL+AKGYNQQEGI
Sbjct: 297 MAEEIEAMERTNTWTIVSLPKNYHTVGSKWVYKVKYKQHGTVDRYKARLIAKGYNQQEGI 356

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120
           DF DTFSLVAKIVTVKIFLAL  SYNWSFTQMDINN FLNG+LFEEV MSLPLGYQTSQ 
Sbjct: 357 DFSDTFSLVAKIVTVKIFLALVASYNWSFTQMDINNAFLNGDLFEEVRMSLPLGYQTSQV 416

Query: 121 TKKRRKI 128
            +   K+
Sbjct: 417 PRNGEKL 423

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy TrEMBL
Match: A0A5A7T4H5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00920 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.5e-52
Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           MAKEIEAMERTNTW +VS  KDHH VG KWVYKVKC LDGT+DRYKARLVAKGYNQQEGI
Sbjct: 1   MAKEIEAMERTNTWIVVSLLKDHHIVGCKWVYKVKCNLDGTVDRYKARLVAKGYNQQEGI 60

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120
           DF D FS VAKIVTVK FLALATSYNWSF+QMDINN FLN +LFEEVHMSLPLGYQTSQ 
Sbjct: 61  DFSDIFSPVAKIVTVKTFLALATSYNWSFSQMDINNAFLNRDLFEEVHMSLPLGYQTSQV 120

Query: 121 TKKRRKIGLQ 131
             K  K+  +
Sbjct: 121 PGKGEKLACE 130

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy TrEMBL
Match: A0A5D3BYJ4 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00740 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 101/123 (82.11%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           M +EIEAMERTNT T+VS P +HHTVGSKWVYKVKCKL+GTI+RYKARLVAKGYNQQEG+
Sbjct: 1   MVEEIEAMERTNTLTVVSLPNNHHTVGSKWVYKVKCKLEGTINRYKARLVAKGYNQQEGV 60

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQS 120
           DF  TFS VAKIVTVK FLA +TSYNWS TQMDINN FLNG+LFEEVHMSLPLGYQTSQ 
Sbjct: 61  DFSGTFSQVAKIVTVKTFLAFSTSYNWSLTQMDINNAFLNGDLFEEVHMSLPLGYQTSQV 120

Query: 121 TKK 124
            +K
Sbjct: 121 RQK 123

[Close]

BLAST of Cmc11g0302341.1 vs. ExPASy TrEMBL
Match: A0A5A7SYT6 (Rhodanese-like domain-containing protein 6 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00060 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.3e-51
Identity = 104/124 (83.87%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTID-RYKARLVAKGYNQQEG 60
           MA+EIEAMERTNTWTIVS  K+HHTVGSKWVYKVK K DGT+D RYKARLVAKGY QQEG
Sbjct: 1   MAEEIEAMERTNTWTIVSLLKNHHTVGSKWVYKVKYKQDGTVDIRYKARLVAKGYKQQEG 60

Query: 61  IDFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQ 120
           IDFLDTFS VAKIVTVK+FLAL  SYNWS TQMDINN FLNG+LFEEVHMSLPLGY+TSQ
Sbjct: 61  IDFLDTFSPVAKIVTVKVFLALIASYNWSLTQMDINNAFLNGDLFEEVHMSLPLGYRTSQ 120

Query: 121 STKK 124
             +K
Sbjct: 121 VPRK 124

[Close]

BLAST of Cmc11g0302341.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 146.0 bits (367), Expect = 2.2e-35
Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           M  EI AME T+TW I + P +   +G KWVYK+K   DGTI+RYKARLVAKGY QQEGI
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DFLDTFSLVAKIVTVKIFLALATSYNWSFTQMDINNVFLNGELFEEVHMSLPLGYQTSQ 120
           DF++TFS V K+ +VK+ LA++  YN++  Q+DI+N FLNG+L EE++M LP GY   Q
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQ 220

[Close]

BLAST of Cmc11g0302341.1 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-18
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 1   MAKEIEAMERTNTWTIVSFPKDHHTVGSKWVYKVKCKLDGTIDRYKARLVAKGYNQQEGI 60
           M +E++A+ R  TW +V  P + + +G KWV+K K   DGT+DR KARLVAKG++Q+EGI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFLDTFSLVAKIVTVKIFLALA------TSYNWSF 90
            F++T+S V +  T++  L +A       S NW F
Sbjct: 104 YFVETYSPVVRTATIRTILNVAQQLEVGQSINWMF 138

The following BLAST results are available for this feature:

BLAST of Cmc11g0302341.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901937.1	6.9e-68	100.00	PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]	[more]
KAA0043630.1	1.1e-52	82.68	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa] >...	[more]
KAA0038364.1	3.1e-52	80.77	putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ97031.1 putative m...	[more]
XP_038879273.1	5.3e-52	81.10	uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]	[more]
KAA0046892.1	5.9e-51	82.11	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa] >...	[more]

BLAST of Cmc11g0302341.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.2e-24	45.69	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.4e-23	45.69	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.1e-20	38.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-20	45.05	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	5.8e-17	44.21	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc11g0302341.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E133	3.3e-68	100.00	uncharacterized mitochondrial protein AtMg00820-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7TK43	5.2e-53	82.68	Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ...	[more]
A0A5A7T4H5	1.5e-52	80.77	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BYJ4	2.8e-51	82.11	Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ...	[more]
A0A5A7SYT6	6.3e-51	83.87	Rhodanese-like domain-containing protein 6 isoform X2 OS=Cucumis melo var. makuw...	[more]

BLAST of Cmc11g0302341.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.2e-35	57.14	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.1e-18	44.21	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 12..123 e-value: 4.1E-32 score: 111.7
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 33..117
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 33..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0302341	Cmc11g0302341	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0302341.1-exon	Cmc11g0302341.1-exon-CMiso1.1chr11:23252348..23252743	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0302341.1-cds	Cmc11g0302341.1-cds-CMiso1.1chr11:23252348..23252743	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0302341.1	Cmc11g0302341.1-protein	polypeptide