Cmc11g0302311.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0302311.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	CMiso1.1chr11: 23178905 .. 23182142 (+)
Sequence length	1355
RNA-Seq Expression	Cmc11g0302311.1
Synteny	Cmc11g0302311.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAACGGATTTTTTGTTTGGGCATATAAACCAACCCTCCATGCAATTTTTCCTCCCCCTTCTTCACGTTAACGCGGTCGCAGTGCGCCTTCCCCTCTCTTCCATTCAGCTTTCTCCTTCTTCCTCCGGCGATCAGTTCGACGGCGTCGGCGGCAATCTCCTCCAACGACAGTGTGGTTCTTCCCTCTCGATAGCACGTACGTGAACAAGGCGTGCGGCCACGAGCGAGCCGACGGCAGTGACGCGAAAACCTCGTTATCGAGCCTAGTGCGCCCACGAACCAGCAACGATCACGCACAGCAGCAGCATCGAACGTGACCCGGGCCGTTTGAACACCCTAAAATTGCGTTTTCCCCCTTCCTACAAGGTTCGAAACTTACCCATTCTTGTTCGGCATTATGTTTGAAATACCCACTTCTGTGTCGAATGTCTGTGATTTGATGATTCCCTTTTGTTTGGCTTTGATATTCTTATATGCTTTAGGATTAGTCGAGTTGAGGGGAATGTGGATAGATTTTATCTTTCGTTTTCGTTTTCTCCCCCTTTCCCCCCTGTTTTTTGGTTTAGGAATTGAGTTGTATACTCTTTTGTGTGCATCTTGTTGAGAATAATTATTGAATACTGAGTTTCGTGAAAATTTGTTTCGGCTGAAAGAAATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGAGATTTCGAGCTTGATATGTCTAAAGCACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGGTATAGTCTCATACTATACAATGATAATCTCATTTATTTATGACTCTTTTGATAACTATTTAGTTTTCAATTTTTAGTTTCTGAAGATTGTGTTTGGCGTGTCACAACTCATTTACTATGAATTTCATTTTCTAATGTAAACATTGAATTTTGAGCAAGTTTCAATAGAAAATATAAACTACTATTCTTTCGTTTTCAAAACCTGGCTTAAATTTTGAAGACTCATATAAAATGTAGATAACAAAATATAGAAACCAATAGGTATAAGTAATATTTACAAGCTTAATTTTCAAGAACCAAAAGCTAAGGGTGTGTTTGGCCCAAGGAGTTTTGAAATGTAAAGTAAGAGTTAAGAAGTAGTAGTTGTGAACTCCACTCTTTGTTTGGTTCAAGGAGTGGTGGGTCCTACCGCTAAAAAACTCTAATTTTATATTTTATCAACTTCTTACATTGTGGACCTGTGAACTTCATTACTCCTTACTCCTCGATATTTCACTCCTTACCCCAAACACCACCTTAGGGTTTGTCTGACTCACTCACTTCTAAATGAGTGTTAAATATTTTAACCTTAATCGTTTTCACTACCATAGTTGCACATTTATTAAAGGGACTCTGTCTTACAATTGTGCAACCCCAAACAACATGCTTTGTAACTATAACATGTTAACTCCAAATTTCCTAACTTCAACTTAGCACCCCCAAACACCCCCCAATTGTTATAAAACAGGGTCTCAGTGACTCATGAAATTTATTGTGTAATTAAACATGGTTAAACTTTACCTTAATAAAAGGGTTGCAGTAAGTTTCTAAGAAGTTCCTATTTGAGTCATTCTCAAGTACTTTTGACTGTTTGACATCGAAAATAGTTAACTATTGATAAATATTTGCCACATTTATATAAAGTTTGGTTATAGGGATGCACAGGTTATTTGTTTCCCTCTTTTGATTTATGACTCTTTTACACAGATATATGTTTTCTTCCCTGAAGAGCCGAAGGTCGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGTAATAAAATCGCCGAATTATCGTCTACCAAAGTCCATTTGGAGGTTTTCCAGGTAAAAGTTAAATCTCTTATAGTCTTTGGAGCCTTTTTAACGTCGAATAGATTATTTTAATATTATCACATGCTACAAATTTGACGAGAACTAGAGAGGATTTTCTATTCTCCTATCCTAAAACCAGTTCTCTCGTACTTTTGTTGTCCCTCACATCAACAGTGATGGGGATGGGGGGAGAAGAATGGTGATGTTAGTTTGTATTTATTTATGTGATCTTCATTTTCCAATAATAATGTCTTGCCTACATTCTTATTTTACTGACGTTAACGTTCACCTCTTGGTCACTTTTTGATGCAGGAAGCAGAATTGATGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGTCGCTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACCGTGAAAGAAACACAAGTGAGTTTCATTTTATTTGATCTTATTTTCTTGAAATACAAGAATATTGTGAGAATTATGTTCCATAAAATATGTTGAAATAACTTTGGTAGCTTGGGCCGTGGTGAAAAAGATTTTTATAAATGATAAAGATATTAGGAAATAAGTTCAAGCCATGATGATTACCTACCTAGAATTTAATATCCTACAAGTTACTTTGACAATTAAGGTTGGGTGGTTGTTTTGTTATAATAGTTAAAAGATGCGCTCAAGTTGGCTTTGACACCCTTGGATACATATTGAAAATTGGTATATGTTAGTTTTTAACAAACATTTTGCATTTTGTCTCAGTTACCTCGCATGCAAGTTACTGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGAGATCAATCTGATATGAGCTATTGAAGTTATGGTATTCCTGGCGTGGAAGCGAATTTGAGTTTTAGGCAGTTCTCCTTTATGAGCTTCAACAGCATGTTTTTTGGAAAGGAAGGGTTAAAGGCTTTCTGGTACCATATATTGAGGTTTTTGGTGACAAAGAAAGTCGATGAACAAGTTTATCCATTGGATCTTTTTGGTTTTTCTTTCATTGCTAAAACATTTTCTTTTTGTGAGGTTGATGAACATTTTGAAGAGCCTCCTTTTATTTAAGAAAAATTTAGAGGAATATTCTAGCTATTTCACAAGTGTTTTAAATTCTCAATTATTTATATTAATAAGATTTAGCGTTTTTGGACGAATTT

mRNA sequence

TTTAACGGATTTTTTGTTTGGGCATATAAACCAACCCTCCATGCAATTTTTCCTCCCCCTTCTTCACGTTAACGCGGTCGCAGTGCGCCTTCCCCTCTCTTCCATTCAGCTTTCTCCTTCTTCCTCCGGCGATCAGTTCGACGGCGTCGGCGGCAATCTCCTCCAACGACAGTGTGGTTCTTCCCTCTCGATAGCACGTACGTGAACAAGGCGTGCGGCCACGAGCGAGCCGACGGCAGTGACGCGAAAACCTCGTTATCGAGCCTAGTGCGCCCACGAACCAGCAACGATCACGCACAGCAGCAGCATCGAACGTGACCCGGGCCGTTTGAACACCCTAAAATTGCGTTTTCCCCCTTCCTACAAGAAATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGAGATTTCGAGCTTGATATGTCTAAAGCACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTCCCTGAAGAGCCGAAGGTCGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGTAATAAAATCGCCGAATTATCGTCTACCAAAGTCCATTTGGAGGTTTTCCAGGAAGCAGAATTGATGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGTCGCTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACCGTGAAAGAAACACAATTACCTCGCATGCAAGTTACTGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGAGATCAATCTGATATGAGCTATTGAAGTTATGGTATTCCTGGCGTGGAAGCGAATTTGAGTTTTAGGCAGTTCTCCTTTATGAGCTTCAACAGCATGTTTTTTGGAAAGGAAGGGTTAAAGGCTTTCTGGTACCATATATTGAGGTTTTTGGTGACAAAGAAAGTCGATGAACAAGTTTATCCATTGGATCTTTTTGGTTTTTCTTTCATTGCTAAAACATTTTCTTTTTGTGAGGTTGATGAACATTTTGAAGAGCCTCCTTTTATTTAAGAAAAATTTAGAGGAATATTCTAGCTATTTCACAAGTGTTTTAAATTCTCAATTATTTATATTAATAAGATTTAGCGTTTTTGGACGAATTT

Coding sequence (CDS)

ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGAGATTTCGAGCTTGATATGTCTAAAGCACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTCCCTGAAGAGCCGAAGGTCGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGTAATAAAATCGCCGAATTATCGTCTACCAAAGTCCATTTGGAGGTTTTCCAGGAAGCAGAATTGATGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGTCGCTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACCGTGAAAGAAACACAATTACCTCGCATGCAAGTTACTGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

Protein sequence

MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV

Homology

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BLAST of Cmc11g0302311.1 vs. NCBI nr
Match: XP_008456369.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo] >KAA0054557.1 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 3.7e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180
           KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

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BLAST of Cmc11g0302311.1 vs. NCBI nr
Match: TYK20394.1 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 391.3 bits (1004), Expect = 5.0e-105
Identity = 207/223 (92.83%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQ-------------- 180
           KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQ              
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQVSFILFDLIFLKYK 180

Query: 181 --LPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 208
             LPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 NILPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 223

[Close]

BLAST of Cmc11g0302311.1 vs. NCBI nr
Match: XP_004143184.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN47027.1 hypothetical protein Csa_020872 [Cucumis sativus])

HSP 1 Score: 390.6 bits (1002), Expect = 8.5e-105
Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSK QFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS+
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180
           K+HLEVFQE EL+VNIKEHVLIPEHQ+LTDEEKKTLLGRYTVKETQLPRMQVTDPI+RYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cmc11g0302311.1 vs. NCBI nr
Match: XP_008456371.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo])

HSP 1 Score: 364.8 bits (935), Expect = 5.0e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 21  MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 80
           MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI
Sbjct: 1   MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 60

Query: 81  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV 140
           KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV
Sbjct: 61  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV 120

Query: 141 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY 200
           LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY
Sbjct: 121 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY 180

Query: 201 VTYRYVV 208
           VTYRYVV
Sbjct: 181 VTYRYVV 187

[Close]

BLAST of Cmc11g0302311.1 vs. NCBI nr
Match: XP_018829461.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_018829463.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_018829464.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_041001822.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >XP_041001823.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >XP_041001824.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >KAF5451447.1 hypothetical protein F2P56_026555 [Juglans regia])

HSP 1 Score: 342.8 bits (878), Expect = 2.0e-90
Identity = 172/207 (83.09%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           M   EEEIT+LFR+R+TV+QMLKDRGYFVGDFE+DM+K QFKNK+GE+MKREDLVINKSK
Sbjct: 1   MTLSEEEITRLFRIRRTVMQMLKDRGYFVGDFEIDMTKEQFKNKYGESMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIY+FFPEEPKVG+K ++TY  RMKSENVFRAI VVQ NLTPFAR+ I E+ ST
Sbjct: 61  RNNSSDQIYIFFPEEPKVGVKTMKTYSQRMKSENVFRAILVVQQNLTPFARSSINEI-ST 120

Query: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180
           K HLEVFQEAEL++NIKEHVL+PEHQ LT+EEKKTLL RYTVKETQLPR+QVTDP+ARYY
Sbjct: 121 KFHLEVFQEAELLINIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.0e-81
Identity = 152/203 (74.88%), Postives = 179/203 (88.18%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNS 64
           EEE+ +L+R++KT++QML+DRGYF+ D EL M+K QF  K G+NMKREDLV  K+KRN++
Sbjct: 4   EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 63

Query: 65  SDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHL 124
           SDQ+Y+FFP+E KVG+K ++ Y  RMKSENVFRAI VVQ NLTPFAR  I+E+SS K HL
Sbjct: 64  SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS-KFHL 123

Query: 125 EVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKR 184
           EVFQEAE++VNIKEHVL+PEHQ LT EEKKTLL RYTVKETQLPR+QVTDPIARY+GLKR
Sbjct: 124 EVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKR 183

Query: 185 GQVVKIIRPSETAGRYVTYRYVV 208
           GQVVKIIRPSETAGRYVTYRYVV
Sbjct: 184 GQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.0e-52
Identity = 105/207 (50.72%), Postives = 148/207 (71.50%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE-----NMKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + ++ +
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDM-A 123

Query: 125 TKVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARY 184
            K  LE F + EL++NI EH L+PEH  +T EE   LL RY ++E+QLPR+Q  DP+ARY
Sbjct: 124 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.0e-52
Identity = 105/207 (50.72%), Postives = 148/207 (71.50%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE-----NMKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + ++ +
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDM-A 123

Query: 125 TKVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARY 184
            K  LE F + EL++NI EH L+PEH  +T EE   LL RY ++E+QLPR+Q  DP+ARY
Sbjct: 124 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-52
Identity = 112/212 (52.83%), Postives = 146/212 (68.87%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMK-----REDLV 60
           M   E E  +L+R+RKTVLQM+ DRGY V   ELD     FK  FG+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60

Query: 61  INKSKRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIA 120
           I  +  ++ +DQ++VFFPE+ K+GIK ++    +M+ +N+ RAI VVQ  +TP A+  I 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 121 ELSSTKVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDP 180
           ++ + K  LE F EAELMVNI EH L+PEH  +T EEK  LL RY +K++QLPR+Q  DP
Sbjct: 121 DM-APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDP 180

Query: 181 IARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 208
           +ARY+GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 181 VARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.0e-52
Identity = 104/207 (50.24%), Postives = 147/207 (71.01%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE-----NMKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +F+ +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + ++ +
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDM-A 123

Query: 125 TKVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARY 184
            K  LE F + EL++NI EH L+PEH  +T EE   LL RY ++E QLPR+Q  DP+ARY
Sbjct: 124 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 185 YGLKRGQVVKIIRPSETAGRYVTYRYV 207
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy TrEMBL
Match: A0A5A7UJ12 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003460 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.8e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180
           KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy TrEMBL
Match: A0A1S3C2N2 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496327 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.8e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180
           KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy TrEMBL
Match: A0A5D3DA58 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00160 PE=3 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.4e-105
Identity = 207/223 (92.83%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQ-------------- 180
           KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQ              
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQVSFILFDLIFLKYK 180

Query: 181 --LPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 208
             LPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 NILPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 223

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy TrEMBL
Match: A0A0A0KF69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G170410 PE=3 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.1e-105
Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSK QFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS+
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180
           K+HLEVFQE EL+VNIKEHVLIPEHQ+LTDEEKKTLLGRYTVKETQLPRMQVTDPI+RYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Cmc11g0302311.1 vs. ExPASy TrEMBL
Match: A0A1S3C358 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496327 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.4e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 21  MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 80
           MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI
Sbjct: 1   MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 60

Query: 81  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV 140
           KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV
Sbjct: 61  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV 120

Query: 141 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY 200
           LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY
Sbjct: 121 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY 180

Query: 201 VTYRYVV 208
           VTYRYVV
Sbjct: 181 VTYRYVV 187

[Close]

BLAST of Cmc11g0302311.1 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 302.4 bits (773), Expect = 2.9e-82
Identity = 152/203 (74.88%), Postives = 179/203 (88.18%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNS 64
           EEE+ +L+R++KT++QML+DRGYF+ D EL M+K QF  K G+NMKREDLV  K+KRN++
Sbjct: 4   EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 63

Query: 65  SDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHL 124
           SDQ+Y+FFP+E KVG+K ++ Y  RMKSENVFRAI VVQ NLTPFAR  I+E+SS K HL
Sbjct: 64  SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS-KFHL 123

Query: 125 EVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKR 184
           EVFQEAE++VNIKEHVL+PEHQ LT EEKKTLL RYTVKETQLPR+QVTDPIARY+GLKR
Sbjct: 124 EVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKR 183

Query: 185 GQVVKIIRPSETAGRYVTYRYVV 208
           GQVVKIIRPSETAGRYVTYRYVV
Sbjct: 184 GQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cmc11g0302311.1 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-46
Identity = 98/207 (47.34%), Postives = 147/207 (71.01%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENM---KREDLVINKSKR 64
           ++EIT++F+VR+TVLQML+DRGY + + +L++ + +F  +F + M    +E L ++ +K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NNSSDQIYVFFPEEPKVGIKIVETYVG-RMKSENVFRAIFVVQLNLTPFARNKIAELSST 124
            N +D+IYVF+PE PKVG+ +++  V  +M+ + V R I VV + +T  AR  ++EL+  
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNK- 124

Query: 125 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 184
            + +EVF+EAEL+ NI EH L+ ++  L D+ KK LL  YTV++TQLPR+ VTDP+ARYY
Sbjct: 125 MLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYY 184

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYVV 208
           GLKRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 GLKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of Cmc11g0302311.1 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-30
Identity = 80/201 (39.80%), Postives = 124/201 (61.69%), Query Frame = 0


Query: 7   EITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSD 66
           E  K +  R+T ++ML+DRGY V D ++++S  QF+  +GE+   + L I+   R +SS 
Sbjct: 20  ECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSK 79

Query: 67  QIYVFFPEEPKVGIKIVETYVGRMKS-ENVFRAIFVVQLNLTPFARNKIAELSSTKVHLE 126
           +I V F     V +  +      + S EN+   I V+Q ++T  A  K  EL S KV  E
Sbjct: 80  KISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQAL-KAVELFSFKV--E 139

Query: 127 VFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRG 186
           +F+  +L+VN+ +HVL P+HQ L D+EK++LL +++++E QLPR+   DPI RYYGL+ G
Sbjct: 140 LFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETG 199

Query: 187 QVVKIIRPSETAGRYVTYRYV 207
           QV+K+    E +  +VTYR V
Sbjct: 200 QVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Cmc11g0302311.1 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-28
Identity = 74/201 (36.82%), Postives = 115/201 (57.21%), Query Frame = 0


Query: 6   EEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSS 65
           EE  + +  R+  LQML+DRGY V D ++++S   F+  +GE    + L I+   R++S+
Sbjct: 23  EESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSDST 82

Query: 66  DQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLE 125
            ++ + F     V +  + + V  + S+     + +V  N       K  EL S KV  E
Sbjct: 83  KKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKV--E 142

Query: 126 VFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRG 185
           +FQ  +L+VNI +H L P+HQ L DEEK TLL +++++E QLPR+   D I RYYGL++G
Sbjct: 143 IFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKG 202

Query: 186 QVVKIIRPSETAGRYVTYRYV 207
           QVVK+    E    +V +R V
Sbjct: 203 QVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Cmc11g0302311.1 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-24
Identity = 67/202 (33.17%), Postives = 110/202 (54.46%), Query Frame = 0


Query: 7   EITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSD 66
           E  + +  R T  +ML+DRGY V + EL ++ ++F++ FGE  + E L I    R++   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYVFFPEEPKVGIKIVET-YVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLE 126
           +I V F     + +K V   ++    +  +   I V+Q  +  FA+  +     T   +E
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFT---VE 154

Query: 127 VFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRG 186
            F   +L+VNI +H+  P+ + L  EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ 
Sbjct: 155 TFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKK 214

Query: 187 QVVKIIRPSETAGRYVTYRYVV 208
           QVVKI    E  G +VTYR ++
Sbjct: 215 QVVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:

BLAST of Cmc11g0302311.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456369.1	3.7e-108	100.00	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cu...	[more]
TYK20394.1	5.0e-105	92.83	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo ...	[more]
XP_004143184.1	8.5e-105	96.14	DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN47027.1 ...	[more]
XP_008456371.1	5.0e-97	100.00	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cu...	[more]
XP_018829461.1	2.0e-90	83.09	DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_01882...	[more]

BLAST of Cmc11g0302311.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	4.0e-81	74.88	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
Q80UW8	1.0e-52	50.72	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	1.0e-52	50.72	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
A8XGH1	2.3e-52	52.83	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]
Q5R587	3.0e-52	50.24	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]

BLAST of Cmc11g0302311.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ12	1.8e-108	100.00	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]
A0A1S3C2N2	1.8e-108	100.00	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]
A0A5D3DA58	2.4e-105	92.83	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0KF69	4.1e-105	96.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G170410 PE=3 SV=1	[more]
A0A1S3C358	2.4e-97	100.00	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 OS=Cucumis mel...	[more]

BLAST of Cmc11g0302311.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	2.9e-82	74.88	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	1.5e-46	47.34	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	4.3e-30	39.80	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	1.8e-28	36.82	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	6.0e-24	33.17	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 132..207 e-value: 3.9E-33 score: 114.9
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 132..207
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 4..131 e-value: 5.5E-44 score: 151.6
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 5..135
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 2..207 e-value: 1.4E-83 score: 277.4
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 e-value: 5.7E-30 score: 103.8
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 134..206 e-value: 2.0E-33 score: 114.1
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..207
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 1..207
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 134..207 score: 22.072636

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0302311	Cmc11g0302311	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0302311.1-exon	Cmc11g0302311.1-exon-CMiso1.1chr11:23178905..23179271	exon
Cmc11g0302311.1-exon	Cmc11g0302311.1-exon-CMiso1.1chr11:23179559..23179761	exon
Cmc11g0302311.1-exon	Cmc11g0302311.1-exon-CMiso1.1chr11:23180728..23180910	exon
Cmc11g0302311.1-exon	Cmc11g0302311.1-exon-CMiso1.1chr11:23181211..23181324	exon
Cmc11g0302311.1-exon	Cmc11g0302311.1-exon-CMiso1.1chr11:23181655..23182142	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0302311.1-five_prime_utr	Cmc11g0302311.1-five_prime_utr-CMiso1.1chr11:23178905..23179271	five_prime_UTR
Cmc11g0302311.1-five_prime_utr	Cmc11g0302311.1-five_prime_utr-CMiso1.1chr11:23179559..23179560	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0302311.1-cds	Cmc11g0302311.1-cds-CMiso1.1chr11:23179561..23179761	CDS
Cmc11g0302311.1-cds	Cmc11g0302311.1-cds-CMiso1.1chr11:23180728..23180910	CDS
Cmc11g0302311.1-cds	Cmc11g0302311.1-cds-CMiso1.1chr11:23181211..23181324	CDS
Cmc11g0302311.1-cds	Cmc11g0302311.1-cds-CMiso1.1chr11:23181655..23181780	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0302311.1-three_prime_utr	Cmc11g0302311.1-three_prime_utr-CMiso1.1chr11:23181781..23182142	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0302311.1	Cmc11g0302311.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity