Cmc11g0301711.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0301711.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr11: 22163255 .. 22163704 (+)
Sequence length	450
RNA-Seq Expression	Cmc11g0301711.1
Synteny	Cmc11g0301711.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTATTCCTTATGCATCCATTGTTGGAAGCTTATTGTATGCACAGACTTGCACTAGACCAGACATCAGTTTTGCTGTGAGTATGCTAGGCAGGTATCAAAGTAATCTAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAGGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGGTTGGATATTCAGATTTAGATTTTGTCGGATGTGTGGATTCAAGAAAGTCCACTTTTGGCTATTTGTTCCTATTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATAGCTGCATCTACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGCTGCGGAACTTTATCTTAGGACTTGAATTGTCAACAATATTGCCAAGCCGCTGA

mRNA sequence

ATGGAAACTATTCCTTATGCATCCATTGTTGGAAGCTTATTGTATGCACAGACTTGCACTAGACCAGACATCAGTTTTGCTGTGAGTATGCTAGGCAGGTATCAAAGTAATCTAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAGGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGGTTGGATATTCAGATTTAGATTTTGTCGGATGTGTGGATTCAAGAAAGTCCACTTTTGGCTATTTGTTCCTATTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATAGCTGCATCTACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGCTGCGGAACTTTATCTTAGGACTTGAATTGTCAACAATATTGCCAAGCCGCTGA

Coding sequence (CDS)

ATGGAAACTATTCCTTATGCATCCATTGTTGGAAGCTTATTGTATGCACAGACTTGCACTAGACCAGACATCAGTTTTGCTGTGAGTATGCTAGGCAGGTATCAAAGTAATCTAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAGGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGGTTGGATATTCAGATTTAGATTTTGTCGGATGTGTGGATTCAAGAAAGTCCACTTTTGGCTATTTGTTCCTATTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATAGCTGCATCTACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGCTGCGGAACTTTATCTTAGGACTTGAATTGTCAACAATATTGCCAAGCCGCTGA

Protein sequence

METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFILGLELSTILPSR

Homology

[Close]

BLAST of Cmc11g0301711.1 vs. NCBI nr
Match: KAA0054443.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 298.5 bits (763), Expect = 3.2e-77
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIA+STME EF
Sbjct: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIASSTMEVEF 120

Query: 121 VACFEATVHGLWLRNFILGLELSTILPSR 150
           VACFEATVHGLWLRNFILGLELSTILPSR
Sbjct: 121 VACFEATVHGLWLRNFILGLELSTILPSR 149

[Close]

BLAST of Cmc11g0301711.1 vs. NCBI nr
Match: TYK14596.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 4.2e-77
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEV+GYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIA+STME EF
Sbjct: 61  LTYKRSDHLEVIGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIASSTMEVEF 120

Query: 121 VACFEATVHGLWLRNFILGLELSTILPSR 150
           VACFEATVHGLWLRNFILGLELSTILPSR
Sbjct: 121 VACFEATVHGLWLRNFILGLELSTILPSR 149

[Close]

BLAST of Cmc11g0301711.1 vs. NCBI nr
Match: KAA0046843.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04491.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 133/140 (95.00%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISFAV MLGRYQSN GMDHWKAAKKVLRYLQGTKDYM
Sbjct: 524 METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYM 583

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEV+GYSD DFVGCVD+RKSTFGYLFLLAEGAISWK AKQSIIAASTMEAEF
Sbjct: 584 LTYKRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEAEF 643

Query: 121 VACFEATVHGLWLRNFILGL 141
           VACFEATVHGLWLRNFI GL
Sbjct: 644 VACFEATVHGLWLRNFISGL 663

[Close]

BLAST of Cmc11g0301711.1 vs. NCBI nr
Match: KAA0051161.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISFAV MLGRYQSNLGMDHWKAAKKVLRYL+GTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNLGMDHWKAAKKVLRYLEGTKDYM 60

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEV+GYSD DF GCVD+RKSTFGYLFLLAEGAISWKSAKQSIIAAS MEAEF
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAEF 120

Query: 121 VACFEATVHGLWLRNFILGL 141
           VACFEATVHGLWLRNFI GL
Sbjct: 121 VACFEATVHGLWLRNFISGL 140

[Close]

BLAST of Cmc11g0301711.1 vs. NCBI nr
Match: KAA0061426.1 (F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-67
Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISF V MLGRYQSN GMDHWK AKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFTVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 60

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEV+GYSD DF GCVD+RKSTFGYLFLLAEGAISW+SAKQSII AS+MEAEF
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWRSAKQSIIGASSMEAEF 120

Query: 121 VACFEATVHGLWLRNFILGL 141
           VACFEATVHGLWLRNFI GL
Sbjct: 121 VACFEATVHGLWLRNFISGL 140

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.6e-31
Identity = 67/142 (47.18%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 1    METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
            M  +PY+S VGSL+YA  CTRPDI+ AV ++ R+  N G +HW+A K +LRYL+GT    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
            L +  SD + + GY+D D  G +D+RKS+ GYLF  + GAISW+S  Q  +A ST EAE+
Sbjct: 1166 LCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEY 1225

Query: 121  VACFEATVHGLWLRNFILGLEL 143
            +A  E     +WL+ F+  L L
Sbjct: 1226 IAATETGKEMIWLKRFLQELGL 1246

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 62/133 (46.62%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           M+ +PY S VG+++Y    TRPD++ AV +L ++ S+    HW+A K+VLRYLQ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           L + R+   ++VGYSD D+ G V+SR+ST GYLF L  G +SW+S KQ  +A S+ E E+
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VACFEATVHGLWL 134
           +A  EAT   +WL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 8.5e-25
Identity = 58/141 (41.13%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 5    PYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYMLTYK 64
            P  S++G L+Y   CTRPD++ AV++L RY S    + W+  K+VLRYL+GT D  L +K
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 65   RSDHLE--VVGYSDLDFVGCVDSRKSTFGYLFLLAE-GAISWKSAKQSIIAASTMEAEFV 124
            ++   E  ++GY D D+ G    RKST GYLF + +   I W + +Q+ +AAS+ EAE++
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299

Query: 125  ACFEATVHGLWLRNFILGLEL 143
            A FEA    LWL+  +  + +
Sbjct: 1300 ALFEAVREALWLKFLLTSINI 1320

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-20
Identity = 57/140 (40.71%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 6    YASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYMLTYKR 65
            Y  IVGSL Y    TRPD+S+AV+ L +Y      DHW A K+VLRYL GT D+ +  K+
Sbjct: 1228 YRGIVGSLQYL-AFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFE 125
             + L +  YSD D+ G  D   ST GY+  L    ISW S KQ  +  S+ EAE+ +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  ATVHGLWLRNFI--LGLELS 144
             +    W+ + +  LG++LS
Sbjct: 1348 TSSELQWICSLLTELGIQLS 1366

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-17
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 6    YASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYMLTYKR 65
            Y  IVGSL Y    TRPDIS+AV+ L ++      +H +A K++LRYL GT ++ +  K+
Sbjct: 1245 YRGIVGSLQYL-AFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFE 125
             + L +  YSD D+ G  D   ST GY+  L    ISW S KQ  +  S+ EAE+ +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  ATVHGLWLRNFI--LGLELS 144
             +    W+ + +  LG+ L+
Sbjct: 1365 TSSEMQWICSLLTELGIRLT 1383

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy TrEMBL
Match: A0A5A7UEL7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002030 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.5e-77
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIA+STME EF
Sbjct: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIASSTMEVEF 120

Query: 121 VACFEATVHGLWLRNFILGLELSTILPSR 150
           VACFEATVHGLWLRNFILGLELSTILPSR
Sbjct: 121 VACFEATVHGLWLRNFILGLELSTILPSR 149

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy TrEMBL
Match: A0A5D3CW06 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00990 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEV+GYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIA+STME EF
Sbjct: 61  LTYKRSDHLEVIGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIASSTMEVEF 120

Query: 121 VACFEATVHGLWLRNFILGLELSTILPSR 150
           VACFEATVHGLWLRNFILGLELSTILPSR
Sbjct: 121 VACFEATVHGLWLRNFILGLELSTILPSR 149

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy TrEMBL
Match: A0A5A7TTF5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001050 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 133/140 (95.00%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISFAV MLGRYQSN GMDHWKAAKKVLRYLQGTKDYM
Sbjct: 524 METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYM 583

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEV+GYSD DFVGCVD+RKSTFGYLFLLAEGAISWK AKQSIIAASTMEAEF
Sbjct: 584 LTYKRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEAEF 643

Query: 121 VACFEATVHGLWLRNFILGL 141
           VACFEATVHGLWLRNFI GL
Sbjct: 644 VACFEATVHGLWLRNFISGL 663

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy TrEMBL
Match: A0A5A7UCB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001140 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISFAV MLGRYQSNLGMDHWKAAKKVLRYL+GTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNLGMDHWKAAKKVLRYLEGTKDYM 60

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEV+GYSD DF GCVD+RKSTFGYLFLLAEGAISWKSAKQSIIAAS MEAEF
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAEF 120

Query: 121 VACFEATVHGLWLRNFILGL 141
           VACFEATVHGLWLRNFI GL
Sbjct: 121 VACFEATVHGLWLRNFISGL 140

[Close]

BLAST of Cmc11g0301711.1 vs. ExPASy TrEMBL
Match: A0A5A7V4M2 (F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00040 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 128/140 (91.43%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTCTRPDISF V MLGRYQSN GMDHWK AKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFTVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 60

Query: 61  LTYKRSDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEF 120
           LTYKRSDHLEV+GYSD DF GCVD+RKSTFGYLFLLAEGAISW+SAKQSII AS+MEAEF
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWRSAKQSIIGASSMEAEF 120

Query: 121 VACFEATVHGLWLRNFILGL 141
           VACFEATVHGLWLRNFI GL
Sbjct: 121 VACFEATVHGLWLRNFISGL 140

[Close]

BLAST of Cmc11g0301711.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-21
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 0


Query: 6   YASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYMLTYKR 65
           Y  ++G L+Y Q  TR DISFAV+ L ++     + H +A  K+L Y++GT    L Y  
Sbjct: 378 YRRLIGRLMYLQ-ITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  SDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFE 125
              +++  +SD  F  C D+R+ST GY   L    ISWKS KQ +++ S+ EAE+ A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 ATVHGLWLRNFILGLELSTILPS 149
           AT   +WL  F   L+L    P+
Sbjct: 498 ATDEMMWLAQFFRELQLPLSKPT 519

[Close]

BLAST of Cmc11g0301711.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-14
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 6   YASIVGSLLYAQTCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYMLTYKR 65
           + SIVG+L Y  T TRPDIS+AV+++ +      +  +   K+VLRY++GT  + L   +
Sbjct: 100 FRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 66  SDHLEVVGYSDLDFVGCVDSRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVA 123
           +  L V  + D D+ GC  +R+ST G+   L    ISW + +Q  ++ S+ E E+ A
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRA 215

[Close]

BLAST of Cmc11g0301711.1 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 18 TCTRPDISFAVSMLGRYQSNLGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVVGYSDL 77
          T TRPD++FAV+ L ++ S       +A  KVL Y++GT    L Y  +  L++  ++D 
Sbjct: 4  TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADS 63

Query: 78 DFVGCVDSRKSTFGYLFLL 97
          D+  C D+R+S  G+  L+
Sbjct: 64 DWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc11g0301711.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054443.1	3.2e-77	98.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK14596.1	4.2e-77	97.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0046843.1	3.2e-69	95.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0051161.1	3.2e-69	94.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0061426.1	3.0e-67	91.43	F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0301711.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.6e-31	47.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	1.5e-29	46.62	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	8.5e-25	41.13	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	2.2e-20	40.71	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.0e-17	37.14	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc11g0301711.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UEL7	1.5e-77	98.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CW06	2.0e-77	97.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TTF5	1.5e-69	95.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UCB2	1.5e-69	94.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V4M2	1.4e-67	91.43	F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Cmc11g0301711.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.0e-21	37.76	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.8e-14	35.90	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	5.2e-09	35.44	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 10..96
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 10..96
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 72..147 e-value: 4.71317E-31 score: 106.784

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0301711	Cmc11g0301711	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0301711.1-exon	Cmc11g0301711.1-exon-CMiso1.1chr11:22163255..22163704	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0301711.1-cds	Cmc11g0301711.1-cds-CMiso1.1chr11:22163255..22163704	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0301711.1	Cmc11g0301711.1-protein	polypeptide