Cmc11g0300861.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0300861.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 21132951 .. 21134251 (+)
Sequence length	1167
RNA-Seq Expression	Cmc11g0300861.1
Synteny	Cmc11g0300861.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTTGATTTGATTAATGCTCCTGCAGTATTCATGGACTTGATGAATAGAGTGTTTAAGGACTTCTTAGACACGTTTGTTATAGTTTTCATTGACGATATCTTGGTTTACTCCAAGACAGAGGTCGAGCATGAGGATCACTTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGTTGTATGCCAAGTTTTTCAAGTGTGAGTTCTGGTTGAAGAAGGTATCTTTTCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATTGAAGCTGTACTAGTTGGCCTCGACCGTCTACAGTCAGTGAGATCCGTAGTTTTCTCGGTCTAGCAGGTTATTATAGGAGGTTCGTGGAAGACTTTTCTCGTATAGCTAGTCCCTTGACTCAGTTGACTAGGAAGGGGACTCCATTTGTTTGGAACCCAACTTGTGAGTCTAGTTTCCAGGAGCTCAAGCAGAAGCTTGTGTCCGCACCAGTCCTTACAGTGCCAGATGGGTCTGGGGGCTTTGTAATCTACAATGATGCCTCCAAAAGAGGGTTGCGTTGCGTGTTAATGCAGGAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAATTAAAGAGTCATGAGCAGAACTATCTTACCCATGACCTAGAGTTAGCAGCAGTGTTTTTTACACTAAACATATGGAGACACTACCTGTACGGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTAAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAAGAGATGGCTTGAGTTAGTGAAGGATTATGACTGCGAGATTTTGTATCACCCAGGTAAGTCAAACGTAGTAGCTGACGCGTTGAGTTGGAAGGTTGTGCATTCAGCAGCGCTTATCACCAAGCAAGCACCCTTACTAAGAGATTTCGAGAGAGCTGAGGTTGCAGTCTCAGTAGGGGAAGTGACCTCACAGTTTGCTCAGTTGACCGTGCAACCGACCTTGAGACAGAGGATTATTGTTGCTCAGCTAAATGATCCTTATTTGGTCGAGAAGCGTCTATTAGTAGAGGCAGGGCAAGGTGAGGATTTCTCCATATCCTCTGATGAGGGACTTACTTTCGATGGACGTTTGTGCGTGCCAGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCCTATAAGTACGAAGATGTACCAAGACTTGAGGCGTGCTTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGACTTCGATGTTTGGTGTGCCTGCAGGTGA

mRNA sequence

ATGTCCTTTGATTTGATTAATGCTCCTGCAGTATTCATGGACTTGATGAATAGAGTGTTTAAGGACTTCTTAGACACGTTTGTTATAGTTTTCATTGACGATATCTTGGTTTACTCCAAGACAGAGGTCGAGCATGAGGATCACTTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGTTGTATGCCAAGTTTTTCAAGTGTGAGTTCTGGTTGAAGAAGGTATCTTTTCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATTGAAGCTGTACTAGTTGGCCTCGACCGTCTACAGTCAGTGAGATCCGAGCTCAAGCAGAAGCTTGTGTCCGCACCAGTCCTTACAGTGCCAGATGGGTCTGGGGGCTTTGTAATCTACAATGATGCCTCCAAAAGAGGGTTGCGTTGCGTGTTAATGCAGGAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAATTAAAGAGTCATGAGCAGAACTATCTTACCCATGACCTAGAGTTAGCAGCAGTGTTTTTTACACTAAACATATGGAGACACTACCTGTACGGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTAAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAAGAGATGGCTTGAGTTAGTGAAGGATTATGACTGCGAGATTTTGTATCACCCAGGTAAGTCAAACGTAGTAGCTGACGCGTTGAGTTGGAAGGTTGTGCATTCAGCAGCGCTTATCACCAAGCAAGCACCCTTACTAAGAGATTTCGAGAGAGCTGAGGTTGCAGTCTCAGTAGGGGAAGTGACCTCACAGTTTGCTCAGTTGACCGTGCAACCGACCTTGAGACAGAGGATTATTGTTGCTCAGCTAAATGATCCTTATTTGGTCGAGAAGCGTCTATTAGTAGAGGCAGGGCAAGGTGAGGATTTCTCCATATCCTCTGATGAGGGACTTACTTTCGATGGACGTTTGTGCGTGCCAGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCCTATAAGTACGAAGATGTACCAAGACTTGAGGCGTGCTTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGACTTCGATGTTTGGTGTGCCTGCAGGTGA

Coding sequence (CDS)

ATGTCCTTTGATTTGATTAATGCTCCTGCAGTATTCATGGACTTGATGAATAGAGTGTTTAAGGACTTCTTAGACACGTTTGTTATAGTTTTCATTGACGATATCTTGGTTTACTCCAAGACAGAGGTCGAGCATGAGGATCACTTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGTTGTATGCCAAGTTTTTCAAGTGTGAGTTCTGGTTGAAGAAGGTATCTTTTCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATTGAAGCTGTACTAGTTGGCCTCGACCGTCTACAGTCAGTGAGATCCGAGCTCAAGCAGAAGCTTGTGTCCGCACCAGTCCTTACAGTGCCAGATGGGTCTGGGGGCTTTGTAATCTACAATGATGCCTCCAAAAGAGGGTTGCGTTGCGTGTTAATGCAGGAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAATTAAAGAGTCATGAGCAGAACTATCTTACCCATGACCTAGAGTTAGCAGCAGTGTTTTTTACACTAAACATATGGAGACACTACCTGTACGGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTAAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAAGAGATGGCTTGAGTTAGTGAAGGATTATGACTGCGAGATTTTGTATCACCCAGGTAAGTCAAACGTAGTAGCTGACGCGTTGAGTTGGAAGGTTGTGCATTCAGCAGCGCTTATCACCAAGCAAGCACCCTTACTAAGAGATTTCGAGAGAGCTGAGGTTGCAGTCTCAGTAGGGGAAGTGACCTCACAGTTTGCTCAGTTGACCGTGCAACCGACCTTGAGACAGAGGATTATTGTTGCTCAGCTAAATGATCCTTATTTGGTCGAGAAGCGTCTATTAGTAGAGGCAGGGCAAGGTGAGGATTTCTCCATATCCTCTGATGAGGGACTTACTTTCGATGGACGTTTGTGCGTGCCAGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCCTATAAGTACGAAGATGTACCAAGACTTGAGGCGTGCTTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGACTTCGATGTTTGGTGTGCCTGCAGGTGA

Protein sequence

MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANKLYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVLVGLDRLQSVRSELKQKLVSAPVLTVPDGSGGFVIYNDASKRGLRCVLMQEGKVVAYASRQLKSHEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQKRWLELVKDYDCEILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQLTVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQGEDFSISSDEGLTFDGRLCVPEDSAVKTELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWCACR

Homology

[Close]

BLAST of Cmc11g0300861.1 vs. NCBI nr
Match: KAA0061802.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 748.4 bits (1931), Expect = 3.0e-212
Identity = 377/407 (92.63%), Postives = 383/407 (94.10%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSFDLINAPA+FMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK
Sbjct: 343 MSFDLINAPAIFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 402

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVLVGLDRL---------------- 120
           LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVLVGLDRL                
Sbjct: 403 LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVLVGLDRLHPLSQLTRKGTPFVWN 462

Query: 121 ---QSVRSELKQKLVSAPVLTVPDGSGGFVIYNDASKRGLRCVLMQEGKVVAYASRQLKS 180
              +S   ELKQKLVSAPVLTVPDGSGGFVIY+DASKRGLRCVLMQEGKVVAYASRQLKS
Sbjct: 463 PTCESSFQELKQKLVSAPVLTVPDGSGGFVIYSDASKRGLRCVLMQEGKVVAYASRQLKS 522

Query: 181 HEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQKRWLELV 240
           HEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFT+KELNMRQKRWLELV
Sbjct: 523 HEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTEKELNMRQKRWLELV 582

Query: 241 KDYDCEILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQ 300
           KDYDCEILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQ
Sbjct: 583 KDYDCEILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQ 642

Query: 301 LTVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQGEDFSISSDEGLTFDGRLCVPEDSAVKT 360
           LTVQPTLRQRIIVAQLNDPY VEKRLLVEAGQGEDFSISSD+GLTFDG LC+PEDSAVKT
Sbjct: 643 LTVQPTLRQRIIVAQLNDPYFVEKRLLVEAGQGEDFSISSDDGLTFDGHLCMPEDSAVKT 702

Query: 361 ELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWCACR 389
           ELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWCACR
Sbjct: 703 ELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWCACR 749

[Close]

BLAST of Cmc11g0300861.1 vs. NCBI nr
Match: KAA0061810.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 652.5 bits (1682), Expect = 2.3e-183
Identity = 333/399 (83.46%), Postives = 352/399 (88.22%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSFDL NAPAVFMDLMN+VFKDFLD FVIVFIDDILVYSK EVE+EDHLHQVLGTLRANK
Sbjct: 260 MSFDLTNAPAVFMDLMNKVFKDFLDRFVIVFIDDILVYSKIEVEYEDHLHQVLGTLRANK 319

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV--------------LVGLDRLQS 120
           LYAKFFKCEFWLKKVSFLGHVVSS+GVS+DP+KI+ V               +GL   +S
Sbjct: 320 LYAKFFKCEFWLKKVSFLGHVVSSKGVSIDPSKIKVVTSWPRSSTVNEICSFLGLAACES 379

Query: 121 VRSELKQKLVSAPVLTVPDGSGGFVIYNDASKRGLRCVLMQEGKVVAYASRQLKSHEQNY 180
              ELKQKLVSAPVLTVPDGSGGFVIY+DASKRGL CVLMQ+GKVVAYAS QLKSHEQNY
Sbjct: 380 SFQELKQKLVSAPVLTVPDGSGGFVIYSDASKRGLGCVLMQQGKVVAYASHQLKSHEQNY 439

Query: 181 LTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQKRWLELVKDYDC 240
            THDLELA V F L IWRHYLYGEKIQIFTDHKSLKYFFT+KELNMRQ+R LELVKDYDC
Sbjct: 440 PTHDLELAVVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTEKELNMRQRRLLELVKDYDC 499

Query: 241 EILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQLTVQP 300
           ++LYHPGK+NVVA+ALS KV HSA LITKQAPLLRDFERAE+AVSV EV SQ AQL VQP
Sbjct: 500 KVLYHPGKANVVANALSRKVAHSATLITKQAPLLRDFERAEIAVSVREVASQLAQLIVQP 559

Query: 301 TLRQRIIVAQLNDPYLVEKRLLVEAGQGEDFSISSDEGLTFDGRLCVPEDSAVKTELLTE 360
           TLRQRIIVAQLNDPYLVEK LLVEA QGEDFSISSD+GLTFDGRLCVPEDSAVK ELLTE
Sbjct: 560 TLRQRIIVAQLNDPYLVEKHLLVEAEQGEDFSISSDDGLTFDGRLCVPEDSAVKIELLTE 619

Query: 361 AHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWC 386
           AHSSPFTMHP STKMYQDLRRAYWWRN+KREVADF   C
Sbjct: 620 AHSSPFTMHPGSTKMYQDLRRAYWWRNIKREVADFVSRC 658

[Close]

BLAST of Cmc11g0300861.1 vs. NCBI nr
Match: TYK29789.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 636.7 bits (1641), Expect = 1.3e-178
Identity = 327/399 (81.95%), Postives = 349/399 (87.47%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSF L NAPAVF+DLMNR+FKDFLDTFVIVFIDDILVYSKTEVEHE+HLHQVLGTLRANK
Sbjct: 55  MSFGLTNAPAVFIDLMNRMFKDFLDTFVIVFIDDILVYSKTEVEHENHLHQVLGTLRANK 114

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV--------------LVGLDRLQS 120
           LYAKF K EFWL+KVSFLGHVVSSEGVSVDPAKIEAV               +GL     
Sbjct: 115 LYAKFSKREFWLEKVSFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIRSFLGLTGYYR 174

Query: 121 VRSELKQKLVSAPVLTVPDGSGGFVIYNDASKRGLRCVLMQEGKVVAYASRQLKSHEQNY 180
              +LKQKLVSAPVLTVPDGS  FVIY+DASK+G+ CVLMQ+GKVV YASRQLKSHEQNY
Sbjct: 175 SFQKLKQKLVSAPVLTVPDGSVSFVIYSDASKKGMGCVLMQQGKVVVYASRQLKSHEQNY 234

Query: 181 LTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQKRWLELVKDYDC 240
            THDLELAA+ F L IWRHYLYGE+IQIFT++KSLKYFFT+KELNMRQ+RWLELVKDYDC
Sbjct: 235 PTHDLELAAMVFALKIWRHYLYGEEIQIFTENKSLKYFFTRKELNMRQRRWLELVKDYDC 294

Query: 241 EILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQLTVQP 300
           EILYHP K+NVVADALS KVVHSAALITKQAPLLRDFERAE+ VSVGEVTSQ A LTVQP
Sbjct: 295 EILYHPDKANVVADALSRKVVHSAALITKQAPLLRDFERAEITVSVGEVTSQLAHLTVQP 354

Query: 301 TLRQRIIVAQLNDPYLVEKRLLVEAGQGEDFSISSDEGLTFDGRLCVPEDSAVKTELLTE 360
           +LRQ IIVAQLNDPYLVEKRLLVEAGQ EDFSISSD+ LTFDG  CVP+DSAVK ELLTE
Sbjct: 355 SLRQMIIVAQLNDPYLVEKRLLVEAGQSEDFSISSDDRLTFDGHFCVPDDSAVKAELLTE 414

Query: 361 AHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWC 386
           AHSSPFTMHP STKMYQDLRRAYWWRNMKREVA+F   C
Sbjct: 415 AHSSPFTMHPGSTKMYQDLRRAYWWRNMKREVANFVSRC 453

[Close]

BLAST of Cmc11g0300861.1 vs. NCBI nr
Match: TYK08868.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 636.3 bits (1640), Expect = 1.7e-178
Identity = 334/430 (77.67%), Postives = 351/430 (81.63%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSF L NAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+HLHQVL TLRANK
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 132

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV-----------------LVGLDR 120
           LYAKF KCEFWLKKV+FLGHVVSSEGVSVD AKIEAV                 L G  R
Sbjct: 133 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDLAKIEAVTNWPRPSTVNEIRSFLGLAGYYR 192

Query: 121 ----------------------------LQSVRSELKQKLVSAPVLTVPDGSGGFVIYND 180
                                        +S   ELKQKLV+APVLTVPDGSG FVIY+D
Sbjct: 193 RFVEDFSRIASPLTQLTRKGTPFVWSPTCESSFLELKQKLVTAPVLTVPDGSGSFVIYSD 252

Query: 181 ASKRGLRCVLMQEGKVVAYASRQLKSHEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIF 240
            SK+GL CVLMQ+GKVVAYASRQLKSHEQNY THDLELAAV FTL IWRHYLYGE+IQI+
Sbjct: 253 GSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGERIQIY 312

Query: 241 TDHKSLKYFFTQKELNMRQKRWLELVKDYDCEILYHPGKSNVVADALSWKVVHSAALITK 300
           TDHKSLKYFFTQKELNMRQ+RWLELVKDYDCEILYHPGK+NVVADALS KV HSAALITK
Sbjct: 313 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 372

Query: 301 QAPLLRDFERAEVAVSVGEVTSQFAQLTVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQGE 360
           Q PLLRDFERAE+AVSVGEVTSQ AQL VQPTLRQRIIVAQLNDPYLVEKR LVE  QGE
Sbjct: 373 QTPLLRDFERAEIAVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKRRLVETEQGE 432

Query: 361 DFSISSDEGLTFDGRLCVPEDSAVKTELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMK 386
           DFSISS++GL F+GRLCVPEDSAVKTELLTEAHSSPFTMHP STKMYQDLR  YWWRNMK
Sbjct: 433 DFSISSNDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMK 492

[Close]

BLAST of Cmc11g0300861.1 vs. NCBI nr
Match: KAA0032248.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 635.6 bits (1638), Expect = 2.9e-178
Identity = 326/401 (81.30%), Postives = 348/401 (86.78%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSF L NAPAVFMDLMN+VFKDFLD+FVIVFIDDIL+YSKTE EHE+HLHQVL TLRANK
Sbjct: 522 MSFGLTNAPAVFMDLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLKTLRANK 581

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV-----------------LVGLDR 120
           LYAKF KCEFWL+KV+FLGHVVSSEGVSVDPAKIEAV                 L G  R
Sbjct: 582 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 641

Query: 121 LQSVRS---ELKQKLVSAPVLTVPDGSGGFVIYNDASKRGLRCVLMQEGKVVAYASRQLK 180
             +  S   ELKQKLV+A VLTVPDGSG FVIY+DASK+GL CVLMQ+GKVVAYASRQLK
Sbjct: 642 SPACESSFQELKQKLVTASVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLK 701

Query: 181 SHEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQKRWLEL 240
            HEQNY THDLELAAV F L IWRHYLYGEKIQI+TDHKSLKYFFTQKELNMRQ+RWLEL
Sbjct: 702 VHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLEL 761

Query: 241 VKDYDCEILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFA 300
           VKDYDCEILYHPGK+NVVADALS KV HSAALITKQ PLLRDFERAE+AVSVGEVTSQ A
Sbjct: 762 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTSQLA 821

Query: 301 QLTVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQGEDFSISSDEGLTFDGRLCVPEDSAVK 360
           QL+VQPTLRQ+IIVAQLNDPYLV KR +VE GQGEDFSISSD+GL F+GRLCV EDSAV+
Sbjct: 822 QLSVQPTLRQKIIVAQLNDPYLVGKRRMVETGQGEDFSISSDDGLMFEGRLCVLEDSAVR 881

Query: 361 TELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADF 382
           TELLTEAHSSPFTMHP STKMYQ+LR  YWWR MKREVADF
Sbjct: 882 TELLTEAHSSPFTMHPGSTKMYQNLRSVYWWRGMKREVADF 922

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-34
Identity = 95/289 (32.87%), Postives = 137/289 (47.40%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           M F L NAPA F   MN + +  L+   +V++DDI+V+S +  EH   L  V   L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV-----------------LVGLDR 120
           L  +  KCEF  ++ +FLGHV++ +G+  +P KIEA+                 L G  R
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 -----------------------------LQSVRSELKQKLVSAPVLTVPDGSGGFVIYN 180
                                          S   +LK  +   P+L VPD +  F +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASKRGLRCVLMQEGKVVAYASRQLKSHEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQI 240
           DAS   L  VL Q+G  ++Y SR L  HE NY T + EL A+ +    +RHYL G   +I
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

Query: 241 FTDHKSLKYFFTQKELNMRQKRWLELVKDYDCEILYHPGKSNVVADALS 244
            +DH+ L + +  K+ N +  RW   + ++D +I Y  GK N VADALS
Sbjct: 574 SSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALS 622

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-33
Identity = 87/289 (30.10%), Postives = 139/289 (48.10%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           M F L NAPA F   MN + +  L+   +V++DDI+++S +  EH + +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVL---------------------- 120
           L  +  KCEF  K+ +FLGH+V+ +G+  +P K++A++                      
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 ----------------------VGLDRLQSVRS--ELKQKLVSAPVLTVPDGSGGFVIYN 180
                                 +   +L+ + +  +LK  ++  P+L +PD    FV+  
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASKRGLRCVLMQEGKVVAYASRQLKSHEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQI 240
           DAS   L  VL Q G  +++ SR L  HE NY   + EL A+ +    +RHYL G +  I
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

Query: 241 FTDHKSLKYFFTQKELNMRQKRWLELVKDYDCEILYHPGKSNVVADALS 244
            +DH+ L++    KE   + +RW   + +Y  +I Y  GK N VADALS
Sbjct: 573 ASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALS 621

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.4e-31
Identity = 93/305 (30.49%), Postives = 147/305 (48.20%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           + F L NAPA+F  +++ + ++ +     V+IDDI+V+S+    H  +L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV----------------------- 120
           L     K  F   +V FLG++V+++G+  DP K+ A+                       
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 ------------LVGLDR----------------------LQSVRSELKQKLVSAPVLTV 180
                       L  L R                      LQS  ++LK  L S+ +L  
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSF-NDLKSILCSSEILAF 429

Query: 181 PDGSGGFVIYNDASKRGLRCVLMQE----GKVVAYASRQLKSHEQNYLTHDLELAAVFFT 240
           P  +  F +  DAS   +  VL Q+     + +AY SR L   E+NY T + E+ A+ ++
Sbjct: 430 PCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWS 489

Query: 241 LNIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMRQKRWLELVKDYDCEILYHPGKSNVV 244
           L+  R YLYG   I+++TDH+ L +    +  N + KRW   +++Y+CE++Y PGKSNVV
Sbjct: 490 LDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVV 549

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.1e-29
Identity = 109/437 (24.94%), Postives = 194/437 (44.39%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           M + +  APA F   +N +  +  ++ V+ ++DDIL++SK+E EH  H+  VL  L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVLV--------------------- 120
           L     KCEF   +V F+G+ +S +G +     I+ VL                      
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 -----------GLDRL--QSVR-----------SELKQKLVSAPVLTVPDGSGGFVIYND 180
                       L+ L  + VR             +KQ LVS PVL   D S   ++  D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASKRGLRCVLMQEGK-----VVAYASRQLKSHEQNYLTHDLELAAVFFTLNIWRHYLYG- 240
           AS   +  VL Q+        V Y S ++   + NY   D E+ A+  +L  WRHYL   
Sbjct: 714 ASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST 773

Query: 241 -EKIQIFTDHKSLKYFFTQKE--LNMRQKRWLELVKDYDCEILYHPGKSNVVADALSWKV 300
            E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG +N +ADALS   
Sbjct: 774 IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALS--- 833

Query: 301 VHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQLTVQPTLRQRIIVAQLNDPYLVEKR 360
                ++ +  P+ +D E   +        +   Q+++    + +++    ND  L+   
Sbjct: 834 ----RIVDETEPIPKDSEDNSI--------NFVNQISITDDFKNQVVTEYTNDTKLL--N 893

Query: 361 LLVEAGQGEDFSISSDEGLTFDGR--LCVPEDSAVKTELLTEAHSSPFTMHPISTKMYQD 382
           LL    +  + +I   +GL  + +  + +P D+ +   ++ + H     +HP    +   
Sbjct: 894 LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 953

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.1e-29
Identity = 109/437 (24.94%), Postives = 194/437 (44.39%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           M + +  APA F   +N +  +  ++ V+ ++DDIL++SK+E EH  H+  VL  L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVLV--------------------- 120
           L     KCEF   +V F+G+ +S +G +     I+ VL                      
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 -----------GLDRL--QSVR-----------SELKQKLVSAPVLTVPDGSGGFVIYND 180
                       L+ L  + VR             +KQ LVS PVL   D S   ++  D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASKRGLRCVLMQEGK-----VVAYASRQLKSHEQNYLTHDLELAAVFFTLNIWRHYLYG- 240
           AS   +  VL Q+        V Y S ++   + NY   D E+ A+  +L  WRHYL   
Sbjct: 714 ASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST 773

Query: 241 -EKIQIFTDHKSLKYFFTQKE--LNMRQKRWLELVKDYDCEILYHPGKSNVVADALSWKV 300
            E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG +N +ADALS   
Sbjct: 774 IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALS--- 833

Query: 301 VHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQLTVQPTLRQRIIVAQLNDPYLVEKR 360
                ++ +  P+ +D E   +        +   Q+++    + +++    ND  L+   
Sbjct: 834 ----RIVDETEPIPKDSEDNSI--------NFVNQISITDDFKNQVVTEYTNDTKLL--N 893

Query: 361 LLVEAGQGEDFSISSDEGLTFDGR--LCVPEDSAVKTELLTEAHSSPFTMHPISTKMYQD 382
           LL    +  + +I   +GL  + +  + +P D+ +   ++ + H     +HP    +   
Sbjct: 894 LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 953

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy TrEMBL
Match: A0A5A7V0T2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00210 PE=4 SV=1)

HSP 1 Score: 748.4 bits (1931), Expect = 1.5e-212
Identity = 377/407 (92.63%), Postives = 383/407 (94.10%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSFDLINAPA+FMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK
Sbjct: 343 MSFDLINAPAIFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 402

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVLVGLDRL---------------- 120
           LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVLVGLDRL                
Sbjct: 403 LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVLVGLDRLHPLSQLTRKGTPFVWN 462

Query: 121 ---QSVRSELKQKLVSAPVLTVPDGSGGFVIYNDASKRGLRCVLMQEGKVVAYASRQLKS 180
              +S   ELKQKLVSAPVLTVPDGSGGFVIY+DASKRGLRCVLMQEGKVVAYASRQLKS
Sbjct: 463 PTCESSFQELKQKLVSAPVLTVPDGSGGFVIYSDASKRGLRCVLMQEGKVVAYASRQLKS 522

Query: 181 HEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQKRWLELV 240
           HEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFT+KELNMRQKRWLELV
Sbjct: 523 HEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTEKELNMRQKRWLELV 582

Query: 241 KDYDCEILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQ 300
           KDYDCEILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQ
Sbjct: 583 KDYDCEILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQ 642

Query: 301 LTVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQGEDFSISSDEGLTFDGRLCVPEDSAVKT 360
           LTVQPTLRQRIIVAQLNDPY VEKRLLVEAGQGEDFSISSD+GLTFDG LC+PEDSAVKT
Sbjct: 643 LTVQPTLRQRIIVAQLNDPYFVEKRLLVEAGQGEDFSISSDDGLTFDGHLCMPEDSAVKT 702

Query: 361 ELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWCACR 389
           ELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWCACR
Sbjct: 703 ELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWCACR 749

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy TrEMBL
Match: A0A5A7V3F7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00320 PE=4 SV=1)

HSP 1 Score: 652.5 bits (1682), Expect = 1.1e-183
Identity = 333/399 (83.46%), Postives = 352/399 (88.22%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSFDL NAPAVFMDLMN+VFKDFLD FVIVFIDDILVYSK EVE+EDHLHQVLGTLRANK
Sbjct: 260 MSFDLTNAPAVFMDLMNKVFKDFLDRFVIVFIDDILVYSKIEVEYEDHLHQVLGTLRANK 319

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV--------------LVGLDRLQS 120
           LYAKFFKCEFWLKKVSFLGHVVSS+GVS+DP+KI+ V               +GL   +S
Sbjct: 320 LYAKFFKCEFWLKKVSFLGHVVSSKGVSIDPSKIKVVTSWPRSSTVNEICSFLGLAACES 379

Query: 121 VRSELKQKLVSAPVLTVPDGSGGFVIYNDASKRGLRCVLMQEGKVVAYASRQLKSHEQNY 180
              ELKQKLVSAPVLTVPDGSGGFVIY+DASKRGL CVLMQ+GKVVAYAS QLKSHEQNY
Sbjct: 380 SFQELKQKLVSAPVLTVPDGSGGFVIYSDASKRGLGCVLMQQGKVVAYASHQLKSHEQNY 439

Query: 181 LTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQKRWLELVKDYDC 240
            THDLELA V F L IWRHYLYGEKIQIFTDHKSLKYFFT+KELNMRQ+R LELVKDYDC
Sbjct: 440 PTHDLELAVVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTEKELNMRQRRLLELVKDYDC 499

Query: 241 EILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQLTVQP 300
           ++LYHPGK+NVVA+ALS KV HSA LITKQAPLLRDFERAE+AVSV EV SQ AQL VQP
Sbjct: 500 KVLYHPGKANVVANALSRKVAHSATLITKQAPLLRDFERAEIAVSVREVASQLAQLIVQP 559

Query: 301 TLRQRIIVAQLNDPYLVEKRLLVEAGQGEDFSISSDEGLTFDGRLCVPEDSAVKTELLTE 360
           TLRQRIIVAQLNDPYLVEK LLVEA QGEDFSISSD+GLTFDGRLCVPEDSAVK ELLTE
Sbjct: 560 TLRQRIIVAQLNDPYLVEKHLLVEAEQGEDFSISSDDGLTFDGRLCVPEDSAVKIELLTE 619

Query: 361 AHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWC 386
           AHSSPFTMHP STKMYQDLRRAYWWRN+KREVADF   C
Sbjct: 620 AHSSPFTMHPGSTKMYQDLRRAYWWRNIKREVADFVSRC 658

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy TrEMBL
Match: A0A5D3E202 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00040 PE=4 SV=1)

HSP 1 Score: 636.7 bits (1641), Expect = 6.2e-179
Identity = 327/399 (81.95%), Postives = 349/399 (87.47%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSF L NAPAVF+DLMNR+FKDFLDTFVIVFIDDILVYSKTEVEHE+HLHQVLGTLRANK
Sbjct: 55  MSFGLTNAPAVFIDLMNRMFKDFLDTFVIVFIDDILVYSKTEVEHENHLHQVLGTLRANK 114

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV--------------LVGLDRLQS 120
           LYAKF K EFWL+KVSFLGHVVSSEGVSVDPAKIEAV               +GL     
Sbjct: 115 LYAKFSKREFWLEKVSFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIRSFLGLTGYYR 174

Query: 121 VRSELKQKLVSAPVLTVPDGSGGFVIYNDASKRGLRCVLMQEGKVVAYASRQLKSHEQNY 180
              +LKQKLVSAPVLTVPDGS  FVIY+DASK+G+ CVLMQ+GKVV YASRQLKSHEQNY
Sbjct: 175 SFQKLKQKLVSAPVLTVPDGSVSFVIYSDASKKGMGCVLMQQGKVVVYASRQLKSHEQNY 234

Query: 181 LTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQKRWLELVKDYDC 240
            THDLELAA+ F L IWRHYLYGE+IQIFT++KSLKYFFT+KELNMRQ+RWLELVKDYDC
Sbjct: 235 PTHDLELAAMVFALKIWRHYLYGEEIQIFTENKSLKYFFTRKELNMRQRRWLELVKDYDC 294

Query: 241 EILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFAQLTVQP 300
           EILYHP K+NVVADALS KVVHSAALITKQAPLLRDFERAE+ VSVGEVTSQ A LTVQP
Sbjct: 295 EILYHPDKANVVADALSRKVVHSAALITKQAPLLRDFERAEITVSVGEVTSQLAHLTVQP 354

Query: 301 TLRQRIIVAQLNDPYLVEKRLLVEAGQGEDFSISSDEGLTFDGRLCVPEDSAVKTELLTE 360
           +LRQ IIVAQLNDPYLVEKRLLVEAGQ EDFSISSD+ LTFDG  CVP+DSAVK ELLTE
Sbjct: 355 SLRQMIIVAQLNDPYLVEKRLLVEAGQSEDFSISSDDRLTFDGHFCVPDDSAVKAELLTE 414

Query: 361 AHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADFDVWC 386
           AHSSPFTMHP STKMYQDLRRAYWWRNMKREVA+F   C
Sbjct: 415 AHSSPFTMHPGSTKMYQDLRRAYWWRNMKREVANFVSRC 453

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy TrEMBL
Match: A0A5D3CCF0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00620 PE=4 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 8.1e-179
Identity = 334/430 (77.67%), Postives = 351/430 (81.63%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSF L NAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+HLHQVL TLRANK
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 132

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV-----------------LVGLDR 120
           LYAKF KCEFWLKKV+FLGHVVSSEGVSVD AKIEAV                 L G  R
Sbjct: 133 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDLAKIEAVTNWPRPSTVNEIRSFLGLAGYYR 192

Query: 121 ----------------------------LQSVRSELKQKLVSAPVLTVPDGSGGFVIYND 180
                                        +S   ELKQKLV+APVLTVPDGSG FVIY+D
Sbjct: 193 RFVEDFSRIASPLTQLTRKGTPFVWSPTCESSFLELKQKLVTAPVLTVPDGSGSFVIYSD 252

Query: 181 ASKRGLRCVLMQEGKVVAYASRQLKSHEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIF 240
            SK+GL CVLMQ+GKVVAYASRQLKSHEQNY THDLELAAV FTL IWRHYLYGE+IQI+
Sbjct: 253 GSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGERIQIY 312

Query: 241 TDHKSLKYFFTQKELNMRQKRWLELVKDYDCEILYHPGKSNVVADALSWKVVHSAALITK 300
           TDHKSLKYFFTQKELNMRQ+RWLELVKDYDCEILYHPGK+NVVADALS KV HSAALITK
Sbjct: 313 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 372

Query: 301 QAPLLRDFERAEVAVSVGEVTSQFAQLTVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQGE 360
           Q PLLRDFERAE+AVSVGEVTSQ AQL VQPTLRQRIIVAQLNDPYLVEKR LVE  QGE
Sbjct: 373 QTPLLRDFERAEIAVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKRRLVETEQGE 432

Query: 361 DFSISSDEGLTFDGRLCVPEDSAVKTELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMK 386
           DFSISS++GL F+GRLCVPEDSAVKTELLTEAHSSPFTMHP STKMYQDLR  YWWRNMK
Sbjct: 433 DFSISSNDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMK 492

[Close]

BLAST of Cmc11g0300861.1 vs. ExPASy TrEMBL
Match: A0A5A7SNR3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00790 PE=4 SV=1)

HSP 1 Score: 635.6 bits (1638), Expect = 1.4e-178
Identity = 326/401 (81.30%), Postives = 348/401 (86.78%), Query Frame = 0


Query: 1   MSFDLINAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDHLHQVLGTLRANK 60
           MSF L NAPAVFMDLMN+VFKDFLD+FVIVFIDDIL+YSKTE EHE+HLHQVL TLRANK
Sbjct: 522 MSFGLTNAPAVFMDLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLKTLRANK 581

Query: 61  LYAKFFKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAV-----------------LVGLDR 120
           LYAKF KCEFWL+KV+FLGHVVSSEGVSVDPAKIEAV                 L G  R
Sbjct: 582 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 641

Query: 121 LQSVRS---ELKQKLVSAPVLTVPDGSGGFVIYNDASKRGLRCVLMQEGKVVAYASRQLK 180
             +  S   ELKQKLV+A VLTVPDGSG FVIY+DASK+GL CVLMQ+GKVVAYASRQLK
Sbjct: 642 SPACESSFQELKQKLVTASVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLK 701

Query: 181 SHEQNYLTHDLELAAVFFTLNIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQKRWLEL 240
            HEQNY THDLELAAV F L IWRHYLYGEKIQI+TDHKSLKYFFTQKELNMRQ+RWLEL
Sbjct: 702 VHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLEL 761

Query: 241 VKDYDCEILYHPGKSNVVADALSWKVVHSAALITKQAPLLRDFERAEVAVSVGEVTSQFA 300
           VKDYDCEILYHPGK+NVVADALS KV HSAALITKQ PLLRDFERAE+AVSVGEVTSQ A
Sbjct: 762 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTSQLA 821

Query: 301 QLTVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQGEDFSISSDEGLTFDGRLCVPEDSAVK 360
           QL+VQPTLRQ+IIVAQLNDPYLV KR +VE GQGEDFSISSD+GL F+GRLCV EDSAV+
Sbjct: 822 QLSVQPTLRQKIIVAQLNDPYLVGKRRMVETGQGEDFSISSDDGLMFEGRLCVLEDSAVR 881

Query: 361 TELLTEAHSSPFTMHPISTKMYQDLRRAYWWRNMKREVADF 382
           TELLTEAHSSPFTMHP STKMYQ+LR  YWWR MKREVADF
Sbjct: 882 TELLTEAHSSPFTMHPGSTKMYQNLRSVYWWRGMKREVADF 922

[Close]

BLAST of Cmc11g0300861.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 3.1e-05
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 47 DHLHQVLGTLRANKLYAKFFKCEFWLKKVSFLG--HVVSSEGVSVDPAKIEAVL 99
          +HL  VL     ++ YA   KC F   ++++LG  H++S EGVS DPAK+EA++
Sbjct: 2  NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMV 55

The following BLAST results are available for this feature:

BLAST of Cmc11g0300861.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061802.1	3.0e-212	92.63	pol protein [Cucumis melo var. makuwa]	[more]
KAA0061810.1	2.3e-183	83.46	pol protein [Cucumis melo var. makuwa]	[more]
TYK29789.1	1.3e-178	81.95	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK08868.1	1.7e-178	77.67	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032248.1	2.9e-178	81.30	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0300861.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.4e-34	32.87	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.2e-33	30.10	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.4e-31	30.49	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P0CT41	5.1e-29	24.94	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	5.1e-29	24.94	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0300861.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0T2	1.5e-212	92.63	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89...	[more]
A0A5A7V3F7	1.1e-183	83.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89...	[more]
A0A5D3E202	6.2e-179	81.95	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CCF0	8.1e-179	77.67	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00620 PE=...	[more]
A0A5A7SNR3	1.4e-178	81.30	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]

BLAST of Cmc11g0300861.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.1e-05	42.59	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 129..224 e-value: 1.1E-30 score: 106.0
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 6..81 e-value: 5.4E-11 score: 42.4
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 337..381 e-value: 1.5E-8 score: 34.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 9.4E-30 score: 105.2
None	No IPR available	GENE3D	1.10.340.70		coord: 298..388 e-value: 1.1E-10 score: 43.6
None	No IPR available	GENE3D	3.10.20.370		coord: 125..195 e-value: 5.7E-6 score: 28.2
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 110..367
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 110..367
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.12769E-33 score: 121.548
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 131..243 e-value: 8.78542E-54 score: 172.292
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..230

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0300861	Cmc11g0300861	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0300861.1-exon	Cmc11g0300861.1-exon-CMiso1.1chr11:21132951..21133277	exon
Cmc11g0300861.1-exon	Cmc11g0300861.1-exon-CMiso1.1chr11:21133412..21134251	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0300861.1-cds	Cmc11g0300861.1-cds-CMiso1.1chr11:21132951..21133277	CDS
Cmc11g0300861.1-cds	Cmc11g0300861.1-cds-CMiso1.1chr11:21133412..21134251	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0300861.1	Cmc11g0300861.1-protein	polypeptide