Cmc11g0294801.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0294801.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr11: 11594823 .. 11595470 (+)
Sequence length	648
RNA-Seq Expression	Cmc11g0294801.1
Synteny	Cmc11g0294801.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACGTATTTCCTATGCCTCAGTTATGGACAACTTAATGTATGCTATGCTCTGCACTAGGTTAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTATCAGTCCAACCCCGGGGTTAGACCACTGGATAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAACCGATAAGGATTCTAGAAAATCTATGTCGGGATCAGTGTTCACCCTAAATGGGGGAGCTATAGTATGGCGTAGCATCAAGCAAGGATGCATTGCATACTCTACAATGGAGGCTGAATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAATTCCTACATGATTTTGAAGTTGTTCCAAACATGAATTTGCCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGGGAAACACATAGAGAGGAAGTATCACCTGATACGGGAGATTGTGCAACAAGGGGATGTGATCGTCACCAAGATCGCTTCGGAGCAAAACATTGCTGATCCATTTACGAAGACTCTCACAGCTAAAGTGTCGAGGGTCATCTAG

mRNA sequence

ATGAGACGTATTTCCTATGCCTCAGTTATGGACAACTTAATGTATGCTATGCTCTGCACTAGGTTAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTATCAGTCCAACCCCGGGGTTAGACCACTGGATAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAACCGATAAGGATTCTAGAAAATCTATGTCGGGATCAGTGTTCACCCTAAATGGGGGAGCTATAGTATGGCGTAGCATCAAGCAAGGATGCATTGCATACTCTACAATGGAGGCTGAATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAATTCCTACATGATTTTGAAGTTGTTCCAAACATGAATTTGCCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGGGAAACACATAGAGAGGAAGTATCACCTGATACGGGAGATTGTGCAACAAGGGGATGTGATCGTCACCAAGATCGCTTCGGAGCAAAACATTGCTGATCCATTTACGAAGACTCTCACAGCTAAAGTGTCGAGGGTCATCTAG

Coding sequence (CDS)

ATGAGACGTATTTCCTATGCCTCAGTTATGGACAACTTAATGTATGCTATGCTCTGCACTAGGTTAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTATCAGTCCAACCCCGGGGTTAGACCACTGGATAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAACCGATAAGGATTCTAGAAAATCTATGTCGGGATCAGTGTTCACCCTAAATGGGGGAGCTATAGTATGGCGTAGCATCAAGCAAGGATGCATTGCATACTCTACAATGGAGGCTGAATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAATTCCTACATGATTTTGAAGTTGTTCCAAACATGAATTTGCCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGGGAAACACATAGAGAGGAAGTATCACCTGATACGGGAGATTGTGCAACAAGGGGATGTGATCGTCACCAAGATCGCTTCGGAGCAAAACATTGCTGATCCATTTACGAAGACTCTCACAGCTAAAGTGTCGAGGGTCATCTAG

Protein sequence

MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLDKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYVAACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQQGDVIVTKIASEQNIADPFTKTLTAKVSRVI

Homology

[Close]

BLAST of Cmc11g0294801.1 vs. NCBI nr
Match: KAA0067450.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 430.3 bits (1105), Expect = 1.0e-116
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLDKIILKYLRRTRDYMLV 60
           MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLDKIILKYLRRTRDYMLV
Sbjct: 242 MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLDKIILKYLRRTRDYMLV 301

Query: 61  YGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYVAA 120
           YGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYVAA
Sbjct: 302 YGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYVAA 361

Query: 121 CEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR 180
           CEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Sbjct: 362 CEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR 421

Query: 181 EIVQQGDVIVTKIASEQNIADPFTKTLTAKVSRVI 216
           EIVQQGDVIVTKIASEQNIADPFTKTLTAKVSRVI
Sbjct: 422 EIVQQGDVIVTKIASEQNIADPFTKTLTAKVSRVI 456

[Close]

BLAST of Cmc11g0294801.1 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 5.4e-102
Identity = 193/213 (90.61%), Postives = 199/213 (93.43%), Query Frame = 0


Query: 1    MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVR--PLDKIILKYLRRTRDYM 60
            MRRI YAS + +LMYAMLCTR DICYAVGIVSRYQSNPG+      KI+LKYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 1066

Query: 61   LVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYV 120
            LVYGAKDLILTGYTDSDFQTDKDSRKS SGSVFTLNGGA+VWRSIKQGCIA STMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  AACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAKEAVWLRKFLHD EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 1127 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQQGDVIVTKIASEQNIADPFTKTLTAKV 212
            IREIVQ+GDVIVTKIASE NIADPFTKTLTAKV
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKV 1219

[Close]

BLAST of Cmc11g0294801.1 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 5.4e-102
Identity = 193/213 (90.61%), Postives = 199/213 (93.43%), Query Frame = 0


Query: 1    MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVR--PLDKIILKYLRRTRDYM 60
            MRRI YAS + +LMYAMLCTR DICYAVGIVSRYQSNPG+      KI+LKYLRRTRDYM
Sbjct: 881  MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 940

Query: 61   LVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYV 120
            LVYGAKDLILTGYTDSDFQTDKDSRKS SGSVFTLNGGA+VWRSIKQGCIA STMEAEYV
Sbjct: 941  LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1000

Query: 121  AACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAKEAVWLRKFLHD EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 1001 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1060

Query: 181  IREIVQQGDVIVTKIASEQNIADPFTKTLTAKV 212
            IREIVQ+GDVIVTKIASE NIADPFTKTLTAKV
Sbjct: 1061 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKV 1093

[Close]

BLAST of Cmc11g0294801.1 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 380.2 bits (975), Expect = 1.2e-101
Identity = 193/213 (90.61%), Postives = 198/213 (92.96%), Query Frame = 0


Query: 1   MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVR--PLDKIILKYLRRTRDYM 60
           MRRI YAS + +LMY MLCTR DICYAVGIVSRYQSNPG+      KIILKYLRRTRDYM
Sbjct: 72  MRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 131

Query: 61  LVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYV 120
           LVYGAKDLILTGYTDSDFQTDKDSRKS SGSVFTLNGGA+VWRSIKQGCIA STMEAEYV
Sbjct: 132 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 AACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
           AACEAAKEAVWLRKFLHD EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 192 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 251

Query: 181 IREIVQQGDVIVTKIASEQNIADPFTKTLTAKV 212
           IREIVQ+GDVIVTKIASE NIADPFTKTLTAKV
Sbjct: 252 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKV 284

[Close]

BLAST of Cmc11g0294801.1 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 376.3 bits (965), Expect = 1.7e-100
Identity = 192/213 (90.14%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 1   MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVR--PLDKIILKYLRRTRDYM 60
           MRRI YAS + +LMYAMLCTR DICYAVGIVSRYQSNPG+      KIILKYLRRTRDYM
Sbjct: 168 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYM 227

Query: 61  LVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYV 120
           LVYGAKDLILTGYTDSDFQTDKDSRKS SGSVFTLN GA+VWRSIKQGCIA STMEAEYV
Sbjct: 228 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYV 287

Query: 121 AACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
           AACEAAKEAVWLRKFLHD EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 288 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 347

Query: 181 IREIVQQGDVIVTKIASEQNIADPFTKTLTAKV 212
           IREIVQ+GDVIVTKIASE NIADPFTK LTAKV
Sbjct: 348 IREIVQRGDVIVTKIASEHNIADPFTKILTAKV 380

[Close]

BLAST of Cmc11g0294801.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-44
Identity = 96/209 (45.93%), Postives = 132/209 (63.16%), Query Frame = 0


Query: 1    MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLD--KIILKYLRRTRDYM 60
            M ++ Y+S + +LMYAM+CTR DI +AVG+VSR+  NPG    +  K IL+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYV 120
            L +G  D IL GYTD+D   D D+RKS +G +FT +GGAI W+S  Q C+A ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  AACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AA E  KE +WL++FL +  +         +YCD+  A+  SK    H R KHI+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 181  IREIVQQGDVIVTKIASEQNIADPFTKTL 208
            IRE+V    + V KI++ +N AD  TK +
Sbjct: 1286 IREMVDDESLKVLKISTNENPADMLTKVV 1311

[Close]

BLAST of Cmc11g0294801.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 134.0 bits (336), Expect = 2.0e-30
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 0


Query: 8    SVMDNLMYAMLCTRLDICYAVGIVSRYQS--NPGVRPLDKIILKYLRRTRDYMLVYG--- 67
            S++  LMY MLCTR D+  AV I+SRY S  N  +    K +L+YL+ T D  L++    
Sbjct: 1183 SLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNL 1242

Query: 68   AKDLILTGYTDSDFQTDKDSRKSMSGSVFTL-NGGAIVWRSIKQGCIAYSTMEAEYVAAC 127
            A +  + GY DSD+   +  RKS +G +F + +   I W + +Q  +A S+ EAEY+A  
Sbjct: 1243 AFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALF 1302

Query: 128  EAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 187
            EA +EA+WL+  L    +   +  PI +Y DN G ++ +  P  HKR KHI+ KYH  RE
Sbjct: 1303 EAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE 1362

Query: 188  IVQQGDVIVTKIASEQNIADPFTKTLTA 210
             VQ   + +  I +E  +AD FTK L A
Sbjct: 1363 QVQNNVICLEYIPTENQLADIFTKPLPA 1388

[Close]

BLAST of Cmc11g0294801.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.3e-21
Identity = 57/133 (42.86%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 1   MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLD--KIILKYLRRTRDYM 60
           M+ + Y S +  +MY M+ TR D+  AVG++S++ S+P        K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVY-GAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEY 120
           L +  A    L GY+D+D+  D +SR+S SG +F LNGG + WRS KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VAACEAAKEAVWL 131
           +A  EA +EAVWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc11g0294801.1 vs. ExPASy TrEMBL
Match: A0A5A7VJV4 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001160 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 4.9e-117
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLDKIILKYLRRTRDYMLV 60
           MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLDKIILKYLRRTRDYMLV
Sbjct: 242 MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLDKIILKYLRRTRDYMLV 301

Query: 61  YGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYVAA 120
           YGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYVAA
Sbjct: 302 YGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYVAA 361

Query: 121 CEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR 180
           CEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Sbjct: 362 CEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR 421

Query: 181 EIVQQGDVIVTKIASEQNIADPFTKTLTAKVSRVI 216
           EIVQQGDVIVTKIASEQNIADPFTKTLTAKVSRVI
Sbjct: 422 EIVQQGDVIVTKIASEQNIADPFTKTLTAKVSRVI 456

[Close]

BLAST of Cmc11g0294801.1 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.6e-102
Identity = 193/213 (90.61%), Postives = 199/213 (93.43%), Query Frame = 0


Query: 1    MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVR--PLDKIILKYLRRTRDYM 60
            MRRI YAS + +LMYAMLCTR DICYAVGIVSRYQSNPG+      KI+LKYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 1066

Query: 61   LVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYV 120
            LVYGAKDLILTGYTDSDFQTDKDSRKS SGSVFTLNGGA+VWRSIKQGCIA STMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  AACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAKEAVWLRKFLHD EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 1127 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQQGDVIVTKIASEQNIADPFTKTLTAKV 212
            IREIVQ+GDVIVTKIASE NIADPFTKTLTAKV
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKV 1219

[Close]

BLAST of Cmc11g0294801.1 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.6e-102
Identity = 193/213 (90.61%), Postives = 199/213 (93.43%), Query Frame = 0


Query: 1    MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVR--PLDKIILKYLRRTRDYM 60
            MRRI YAS + +LMYAMLCTR DICYAVGIVSRYQSNPG+      KI+LKYLRRTRDYM
Sbjct: 881  MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 940

Query: 61   LVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYV 120
            LVYGAKDLILTGYTDSDFQTDKDSRKS SGSVFTLNGGA+VWRSIKQGCIA STMEAEYV
Sbjct: 941  LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1000

Query: 121  AACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAKEAVWLRKFLHD EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 1001 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1060

Query: 181  IREIVQQGDVIVTKIASEQNIADPFTKTLTAKV 212
            IREIVQ+GDVIVTKIASE NIADPFTKTLTAKV
Sbjct: 1061 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKV 1093

[Close]

BLAST of Cmc11g0294801.1 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.8e-102
Identity = 193/213 (90.61%), Postives = 198/213 (92.96%), Query Frame = 0


Query: 1   MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVR--PLDKIILKYLRRTRDYM 60
           MRRI YAS + +LMY MLCTR DICYAVGIVSRYQSNPG+      KIILKYLRRTRDYM
Sbjct: 72  MRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 131

Query: 61  LVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYV 120
           LVYGAKDLILTGYTDSDFQTDKDSRKS SGSVFTLNGGA+VWRSIKQGCIA STMEAEYV
Sbjct: 132 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 AACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
           AACEAAKEAVWLRKFLHD EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 192 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 251

Query: 181 IREIVQQGDVIVTKIASEQNIADPFTKTLTAKV 212
           IREIVQ+GDVIVTKIASE NIADPFTKTLTAKV
Sbjct: 252 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKV 284

[Close]

BLAST of Cmc11g0294801.1 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 8.4e-101
Identity = 192/213 (90.14%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 1   MRRISYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVR--PLDKIILKYLRRTRDYM 60
           MRRI YAS + +LMYAMLCTR DICYAVGIVSRYQSNPG+      KIILKYLRRTRDYM
Sbjct: 168 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYM 227

Query: 61  LVYGAKDLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYV 120
           LVYGAKDLILTGYTDSDFQTDKDSRKS SGSVFTLN GA+VWRSIKQGCIA STMEAEYV
Sbjct: 228 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYV 287

Query: 121 AACEAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
           AACEAAKEAVWLRKFLHD EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 288 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 347

Query: 181 IREIVQQGDVIVTKIASEQNIADPFTKTLTAKV 212
           IREIVQ+GDVIVTKIASE NIADPFTK LTAKV
Sbjct: 348 IREIVQRGDVIVTKIASEHNIADPFTKILTAKV 380

[Close]

BLAST of Cmc11g0294801.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 98.2 bits (243), Expect = 8.5e-21
Identity = 60/180 (33.33%), Postives = 100/180 (55.56%), Query Frame = 0


Query: 5   SYASVMDNLMYAMLCTRLDICYAVGIVSRYQSNPGVRPLDKI--ILKYLRRTRDYMLVYG 64
           +Y  ++  LMY  + TRLDI +AV  +S++   P +     +  IL Y++ T    L Y 
Sbjct: 377 AYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS 436

Query: 65  AK-DLILTGYTDSDFQTDKDSRKSMSGSVFTLNGGAIVWRSIKQGCIAYSTMEAEYVAAC 124
           ++ ++ L  ++D+ FQ+ KD+R+S +G    L    I W+S KQ  ++ S+ EAEY A  
Sbjct: 437 SQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALS 496

Query: 125 EAAKEAVWLRKFLHDFEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 182
            A  E +WL +F  + ++   ++ P  L+CDN+ A+  +     H+R KHIE   H +RE
Sbjct: 497 FATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

The following BLAST results are available for this feature:

BLAST of Cmc11g0294801.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067450.1	1.0e-116	100.00	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
KAA0025945.1	5.4e-102	90.61	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	5.4e-102	90.61	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	1.2e-101	90.61	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061170.1	1.7e-100	90.14	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0294801.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-44	45.93	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.0e-30	39.42	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	6.3e-21	42.86	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc11g0294801.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJV4	4.9e-117	100.00	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5A7TZD0	2.6e-102	90.61	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	2.6e-102	90.61	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7TKM4	5.8e-102	90.61	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5A7V1F5	8.4e-101	90.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]

BLAST of Cmc11g0294801.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.5e-21	33.33	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 83..185
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 83..185
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 69..210 e-value: 3.23329E-69 score: 206.165

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0294801	Cmc11g0294801	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0294801.1-exon	Cmc11g0294801.1-exon-CMiso1.1chr11:11594823..11595470	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0294801.1-cds	Cmc11g0294801.1-cds-CMiso1.1chr11:11594823..11595470	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0294801.1	Cmc11g0294801.1-protein	polypeptide