Cmc11g0293201.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0293201.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase III subunit RPC5 isoform X1
Location	CMiso1.1chr11: 9382348 .. 9388236 (-)
Sequence length	900
RNA-Seq Expression	Cmc11g0293201.1
Synteny	Cmc11g0293201.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTTTTTACCTTTTCCCTTTCCCTCCATACAACCCCAATTTCCCTCTTGCTGATCTTCTCACAACCCACACGCTACCACTACCCTCTTCTCACAACTCACCCATCCGAATGTCGTCGAATCTGCTACCATCCGAACGTCATCGAACCTGCTACCCTTCGAATGCTGTCGAACGCTGTTGCTACTTGCTAAGTACCATCCGAATGTTGTCAAAGGTCGCCGCTACCATCCGAACGCTGCCGCTCCCTTGCTCGCCGAATGTCGTAACTGAGCAAGTGCTCGATTCGAACTGAGTAACTATCGAACGTTGTCGGTTTTGATGTGTAAGGCATAAAAATATCTTTATCATCTTTATCATCTATTTCCAGTTATATGTATTGCAATATCCTCTCAGACCACGTTGGAGGCCCTTTGAATTTGAGGGGCGATGTGATGAGGTGAGCATTTTTTTTAATTCCTTATCATTCTGAAAGAATTTGAACTGTACTCTTTTAGTTTCAACAGGTAAGAGTTAAACCTAGCACTGTAGAAGTGGAAATCGACCTGAATGTTGATATTGAATCCAATAACTATGACAGCAAACCTGATTGCACATTCCATATGAAGAAGCATGTATCTTCTTTTACTTTTCTCTTGATTTAAATTGTTGTGAATTCATCCATATTTGGGGATTTACTAGGATTTCAAGTTTGGTTCATTTGTATGATTGAACTTGCAGATCGTGTCAGGGTTAACTTGAAAAAACATGCTACATTCCTTAAGATTTTTCCAAAAGATAAAGAGTGATAGTTTTTTGAAACCGAATTCAGTAGCAATTTCTAGTTGAATCTATGTTCTTTTCTTTCTTTTTTTCACCGTCGTATTATTCTTGAGTTTGTTCTCACTTTATCAACTTAACCATGTTTCACCTAGTAATTGGTCATGGGCTATTTCTTTCGTGTACTATATTCAACAGAAGATTGATTTATTGGCAGTGTATTTTTGTGGATACCAATAAAATTTTGTTTTTGGTTCAGACTTTGACATCTTCATGACAACCGCCTCTAGCTACGTCATATGCTATTGGGCTGCTTATGCAACATAAGGTTGCTTCTCTATCTCTTATCTTTTGAACTGCACACCTTTTCTTTTCTTCTTGTTCTTTCTATGATCAACATTGAATCAACCGTAGTTGATGGACCCTTTGTTTCTTCATTGTTCTGGCACTTGGTCATATTTAATTTTGAATCAGCATGGCCTTACCTTAGATTTAATATACTATGAGCTTTATTTAGAATGTAGTAGGGTTAGACAGGGGTCCCATGAGTGTAGACAATGTACACAAATGACTCAGACTCTCACATAAATAGAAAAGAATAATATTGAAATATTAAGGAAGTGCTATTACGCTTGTTTTTAGAGTCTATGCATTTCAGCTCATAGTAAGCCATTTAAGATCCCTCTCTACTGTCATTTTATTTTTTTTTTTGAAGTTGAAAGTAACAAAAGTTTATAGATCAGAGAACACATTTGGATTAGTTGGTAATAGTTTAGTTCTCGCACCTTTAAATTTGTACCATTTGGTTTACGGTCTTTAATAAGCAACACATCTAATCTTTTTGATTTATAATTTGTATGAAGACTCTCTATCATGAAGGTATTTAACATCAACTGTCAATTTTAATTAAAAGAACTAGTTTATAGTTTATAAGTAATTTTGATCATGTCATTCTAAATTTTAGAGACTAATTTGGTTCTTATTAAGGTTCAAGGGCTAAATTGTTACAACACTACAAGAGACGAGGGTACTCCCGACGCACAAAAACATCGAAAAAAGTGAAAAAAACATCAGGAAATGATATGCCGATGTTTTTCACGACGTCGGGAATAACGTTGGAAGAAATGAATTGGGAGAGGCATTCCCGTCGTACCAACACGATGTCAAGAATGCATCTCTCGATACCGTGACATGCGTCGGCCAAAGTGGCGTTGGGAGTTCCTTTCCCAACAGACCTTATGTCGATGCATGACGCAGCGTTGGGAATGCTTTTTTCGACGTCTTTTGTGCATCGAGAAACTCTTCTCCGACGTGTCTAATGCATCCTAGTCCCGACGTTTCATTGCGTCGAGAATTCATTTTTATATTTTTTTTAAACATGTAATTTCTAATTTTTTTTCCTAAAATATTGTCCTCAAACATTCACAACCACATTCGGATTGCTCAAATATTTTTCCCGACGTTTTGGATTAAATTAAGACAAATTCAATATAAATTAATAAATTAAGAAATACAAACACAAATTAAAAAAAGATGTTTTAAAGTTAATAATACGAATAAGTTCAAAAAATATTAGTAAGTTTAATACAAAAAACGTAGTCCTCATAATACAAAAAGACGCAAACATAATAAAAAAGTCTCCTGACGAGGCGCGTACGCGTCATTCTACACCTTCGGTCCTACAATGATATAAAAGTAACTAAGTTTAGTACATATATCCATATGTTCACTGTATACCATCATTGCAAAAATTTAAGAATAATGAAGACATATATACGTACCACAAAGCTAGAGATCATGTGGTCGTCCCTGTTGTGCATGAGTGAAGTCTTCTATCAGCTTTTGCATTCGTTCAACTTGTGAAGCTAACGCTTGGTAATTTCTATCTTGTACTTCAATCCATTCCAAAACTTCATTAAGTTTAGCTTGTAATTCAATCTCTTTTTGTGTGGATTGTGAACAAGATGTCGAGGAACTGTTCGCACTCGTCGTCCTGCGGGCCTTCGGCTTGGGTCTCCAACCAAGGCCTTTTGAGTAGCCTGATCGTCTACCTAACACCTGATTGCATATCTCATCCTCAGAGAGTGGCTGACTACCCTAGGGTAGGCTGGGATTGGAGTTCCAGCATTTGATTCTGCAACAAATTTAAGAACTATGTTAGGTAACGCGCAAAAATATATAATGAAAGAGAATAATTAACAAGGGCATAACTTACATGTGCATCCTCTGCGGCCTGCGACACGAACGTCCCAGGTCGAACGTGTGTTTCTTTGAACAATTCCACACGATCGACCGACTCTCCTTTTCTCTCAATGAGCTCGTACTGTCGTTGTAGAAACGACTTAGACCCGCTACTATGACTATAAGGTTGCTTCTGTCTAGTAGTCTTGTTCGTCCGTGATTGCTCATGCATGAAAACAATTATATTGTCTATTTCTTATACATATTAAAACTTGAAATCATAACTAACTTCAAACTACGGACGCTACCATAACTGTAGGATAGTCAACACAATCTAACTATTAACAACAAAATACTTCAAGCTATCCTACTACCACCCCTTGAAACCATCCCAAATAGAAGCAAATTCAAAACAAAAAATGCTAACTGCAGGATAGCCATCTCAAATCAACAACAAAGATATTCAACACAAACAGGCTACAATAACTGCAGGATAGCTAAAACAAATCTTAACACACATATTATATTTTCAATTGAAAACATAAACCCCCTTCAAATTAAATGCAATACCCCCCCCCCCACACACACACATTCAAATTTGAATTCAACCATAACCCCCTACAAAAATTTCAATTTAGGTAGTAACCCCCCATTCAAATTTCAATTTAGCTAATAAATCACCCCTTCAAATTTCAATTTAAGTATAACCCCCTTCAAATTTCAATTTAACTATAACCCCCCTCCTCCAATTCAATTTTCAATTTAACTATAAACCATAAACCCTAAATCCTTCAAATTTCAATTTAACTATAAACTCCCCCCCTCCCCCAATTGAATTTTCAATTTAACCATAAATCCTAAATCCTAAATCCTTCAAATTTCAATTCAACCACAAATTACACACATTCTATACAAAAATACATTTAACAAACAAAAATCTATTCAAAAACAAAATCCTAAAACAATTTTCTTAAAAAAAAAATCCTAAAACTTATATTTAAACTAAACAAACTTTATATTTAAACTTACCTAAGGTGGCAGACGATGAGGGATGGCAACGACGACGGAACGGACGACGACGAGCTACAGACCGCGACGAATCTTCGTTTCTCTCTTCTCCCTTTCCCTTTCGTTTTCAGTTATGTGTAAAACAAAACTGAAACGTTTATAAAGGGGATCTCCCGATGCAGCACAAATACGTCGGGAGATCCCCTTTATGGCGTTGGGAATAAGGGTATTCCTGACACTCATTAAAAGGTTTTCCCAACGCACAATAATGTGTCGGGAAAACCCCTTATTTTCGATGTCGTTCTTGACGCACTGTGCATTACTTCGGAAATAAGGTGTATTTTAAATTTAATTTGGCCTTATTCCCGACGCCGTTTGGCCGACGCATGCTCGAAGCATCGCGAATACCCTTTTCCCAATGCCATTCCCGACGCCACAGTTTTCTCCGATGCAGTTTTCATAACGCGTCTGTCCGGCGTTGGGAATAACCTTATTTTCGACGTTCTTTGTGTCGATGTCCTTTTAGGCGTCGGAAAAGCCCCTATTTCTTGTAGTGCAAGTATTGTAACTATCTTTATCCTTACTGACTAAAGGTTAGATAATAATTTTTTACTTCTGTAGAAGCTTAAGACTATACCCAGAGCTATTTTCTCTTGGGAGTGCCCTTGCAACCAACGCCAATAACAAGAATGCAATAGAAAGGGCGTGGATTTGGTAAAAGTAGAATTAGGTTTCATAAAACTTGACTACTAAACCACTTGTAGGAGCATCAAGAAGACGACGATGAGGGAGGACGAGGAAGAGGATGAGGAAGATGACTAAATTGAAAACCAAGTTGTTTGTATCGACCAATCCAGCTTGGTAGAGGGAGGAAGGTGACATATGTTCATCGTTTATCAAAATATAAGAGGATGAGGAGGATGACTAATTGAAAGACAAGTTTAAAAAATATACCAATCAACCCCTCACCCTTCATATACCAAGAATGCAATATACAATTCCATGCTGATTTTGATAAATGGAGATTAGTGTTGTTAAGAAAAGGGATGAAATGGAAGCTTTTGTTACTATGTTTCCTTATTTTCTTTATTTGTTTTCTTGGAGGAAATTTATGATGGGGGCTTGAAGAAACCTAATGTTGTGTAGAAATTTATTTTAATGCATGTACAATATTCTAAAATATGTGCAATCTTATCTTTGCAAAATAGAGCAATAGCGATGTTTCACTCGCAAAAGAATATTAATAAAAGTAGGAAACGAACTTTATGGCGAACAGTAAAAGCAAGTATAAATATTTAAATTAATTGTATTTTGTAGACTACTAGCAATTAGGATTAGTATGTTATCCTAATTTGTTGTTGTATAGTGTCCACTACAAGTCGGGAGCACTGAGTGTAGATACTATGTCATGAAGTTTATGAGAGAAATTGTAAATAGGGGAAGCATTGTCATCTCGGATTCGGTATGTTATATATCAAACTATTTCTTTCGTGGGTATAATAATCTTCATGAATACTAATTCATTTATTTTGCATGTTTACAGATTGATACACGAAAACCGTACTCACATGCCGAGTTAGATGAGGTGTAGGTTGAGTTGGCTGATTTTTGGGTTCGTACACATGATTGCGACTTATTTGGGATTTTGAAGCAAGAAACTTTCTGTTGTGACTGATTTTTTTAATTGTTCATATGGAGGGTGAGGGGTTGATTGATATATTTTTGAAACCTTATGTTGTGGTCACCATTTTGAAACTTTGTTGATAGGTTATTTGTTTATAGGTGAATTGTTCATATAGAGGGGGATGATAGGGAAATTATTCTGAAACTTTGTTGTTGTAGCCATTCTGAAACTCTGATGGAATTGTATATTGGTTTTGTAAATAATAGGAATATTTGCAAAGCTTTGGAAATGATATGGTAAAAGGTTTTATATTTGATG

mRNA sequence

TTTATTTTTTACCTTTTCCCTTTCCCTCCATACAACCCCAATTTCCCTCTTGCTGATCTTCTCACAACCCACACGCTACCACTACCCTCTTCTCACAACTCACCCATCCGAATGTCGTCGAATCTGCTACCATCCGAACGTCATCGAACCTGCTACCCTTCGAATGCTGTCGAACGCTGTTGCTACTTGCTAAGTACCATCCGAATGTTGTCAAAGGTCGCCGCTACCATCCGAACGCTGCCGCTCCCTTGCTCGCCGAATGTCGTAACTGAGCAAGTGCTCGATTCGAACTGAGTAACTATCGAACGTTGTCGGTTTTGATGTGTAAGAGTTAAACCTAGCACTGTAGAAGTGGAAATCGACCTGAATGTTGATATTGAATCCAATAACTATGACAGCAAACCTGATTGCACATTCCATATGAAGAAGCATACTTTGACATCTTCATGACAACCGCCTCTAGCTACGTCATATGCTATTGGGCTGCTTATGCAACATAAGATTGATACACGAAAACCGTACTCACATGCCGAGTTAGATGAGGTGTAGGTTGAGTTGGCTGATTTTTGGGTTCGTACACATGATTGCGACTTATTTGGGATTTTGAAGCAAGAAACTTTCTGTTGTGACTGATTTTTTTAATTGTTCATATGGAGGGTGAGGGGTTGATTGATATATTTTTGAAACCTTATGTTGTGGTCACCATTTTGAAACTTTGTTGATAGGTTATTTGTTTATAGGTGAATTGTTCATATAGAGGGGGATGATAGGGAAATTATTCTGAAACTTTGTTGTTGTAGCCATTCTGAAACTCTGATGGAATTGTATATTGGTTTTGTAAATAATAGGAATATTTGCAAAGCTTTGGAAATGATATGGTAAAAGGTTTTATATTTGATG

Coding sequence (CDS)

ATGTCGTCGAATCTGCTACCATCCGAACGTCATCGAACCTGCTACCCTTCGAATGCTGTCGAACGCTGTTGCTACTTGCTAAGTACCATCCGAATGTTGTCAAAGGTCGCCGCTACCATCCGAACGCTGCCGCTCCCTTGCTCGCCGAATGTCGTAACTGAGCAAGTGCTCGATTCGAACTGA

Protein sequence

MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVVTEQVLDSN

Homology

[Close]

BLAST of Cmc11g0293201.1 vs. NCBI nr
Match: KAA0032544.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 7.1e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 53
          MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNV+
Sbjct: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVL 52

[Close]

BLAST of Cmc11g0293201.1 vs. NCBI nr
Match: TYJ98332.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 5.1e-18
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 53
          MSSNLLPSERHRT Y SNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV
Sbjct: 1  MSSNLLPSERHRTYYASNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 52

[Close]

BLAST of Cmc11g0293201.1 vs. ExPASy TrEMBL
Match: A0A5A7SMZ5 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00570 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 53
          MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNV+
Sbjct: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVL 52

[Close]

BLAST of Cmc11g0293201.1 vs. ExPASy TrEMBL
Match: A0A5D3BF18 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00570 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 53
          MSSNLLPSERHRT Y SNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV
Sbjct: 1  MSSNLLPSERHRTYYASNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 52

The following BLAST results are available for this feature:

BLAST of Cmc11g0293201.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032544.1	7.1e-20	98.08	DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucumis melo var. makuw...	[more]
TYJ98332.1	5.1e-18	96.15	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw...	[more]

BLAST of Cmc11g0293201.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0293201.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMZ5	3.5e-20	98.08	DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucumis melo var. mak...	[more]
A0A5D3BF18	2.5e-18	96.15	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak...	[more]

BLAST of Cmc11g0293201.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0293201	Cmc11g0293201	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0293201.1-exon	Cmc11g0293201.1-exon-CMiso1.1chr11:9382348..9382746	exon
Cmc11g0293201.1-exon	Cmc11g0293201.1-exon-CMiso1.1chr11:9387151..9387219	exon
Cmc11g0293201.1-exon	Cmc11g0293201.1-exon-CMiso1.1chr11:9387624..9387731	exon
Cmc11g0293201.1-exon	Cmc11g0293201.1-exon-CMiso1.1chr11:9387913..9388236	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0293201.1-three_prime_utr	Cmc11g0293201.1-three_prime_utr-CMiso1.1chr11:9382348..9382746	three_prime_UTR
Cmc11g0293201.1-three_prime_utr	Cmc11g0293201.1-three_prime_utr-CMiso1.1chr11:9387151..9387219	three_prime_UTR
Cmc11g0293201.1-three_prime_utr	Cmc11g0293201.1-three_prime_utr-CMiso1.1chr11:9387624..9387731	three_prime_UTR
Cmc11g0293201.1-three_prime_utr	Cmc11g0293201.1-three_prime_utr-CMiso1.1chr11:9387913..9387942	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0293201.1-cds	Cmc11g0293201.1-cds-CMiso1.1chr11:9387943..9388125	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0293201.1-five_prime_utr	Cmc11g0293201.1-five_prime_utr-CMiso1.1chr11:9388126..9388236	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0293201.1	Cmc11g0293201.1-protein	polypeptide