Cmc08g0225751.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc08g0225751.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 17099013 .. 17099612 (+)
Sequence length	537
RNA-Seq Expression	Cmc08g0225751.1
Synteny	Cmc08g0225751.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGAGCCTTTATCTAAGGGGTTAGCTATATACACTCCAGTTAGTGACGTTTTACTTGTCAATGAGGTGTTGCGTAATTGTGAAGTTTTAGTAGAATGTACCAGTATGCTAGTGGACTTGATACGACTAGAGTTACAGAGGTTAGATGTAAATTTGGGAATGGATTTCTTATTTGCTCATTATGCATCTATTGATTGCAATAGGAAGGAAGTGGTTTTCAGAAAACCAAGCTTTGTTGAAGTGGTTTTTAGAGGTATGAGGAAGGTCGTTCCTAAGAGTTTAATCTCAGTTTTGAAAGCTGAGAAATTGCTGAGGAAAGGTTGCACATCGTTTCTTGCAAATGTGGTAGTAATGCAAAGAGAAAAGCTGAAGCCAGAAGATGTTTCTATGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGCCACCTGATAGAGAGATCGAGTTCACTATTGAACTTTTACCAGGGATAGCACCTATTTCACAGGCACCATATAAAATGGCTCCAAGCGAGCTTAAAGAATTGAAGGTGCAGTTACAAAAACTGGTTGACAAAGGATACATCAGACCTAGTGTAACGACTTAG

mRNA sequence

ATGCTAGAGCCTTTATCTAAGGGGTTAGCTATATACACTCCAGTTAGTGACGTTTTACTTGTCAATGAGGTGTTGCGTAATTGTGAAGTTTTAGTAGAATGTACCAGTATGCTAGTGGACTTGATACGACTAGAGTTACAGAGGAAGGAAGTGGTTTTCAGAAAACCAAGCTTTGTTGAAGTGGTTTTTAGAGGTATGAGGAAGGTCGTTCCTAAGAGTTTAATCTCAGTTTTGAAAGCTGAGAAATTGCTGAGGAAAGGTTGCACATCGTTTCTTGCAAATGTGGTAGTAATGCAAAGAGAAAAGCTGAAGCCAGAAGATGTTTCTATGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGCCACCTGATAGAGAGATCGAGTTCACTATTGAACTTTTACCAGGGATAGCACCTATTTCACAGGCACCATATAAAATGGCTCCAAGCGAGCTTAAAGAATTGAAGGTGCAGTTACAAAAACTGGTTGACAAAGGATACATCAGACCTAGTGTAACGACTTAG

Coding sequence (CDS)

ATGCTAGAGCCTTTATCTAAGGGGTTAGCTATATACACTCCAGTTAGTGACGTTTTACTTGTCAATGAGGTGTTGCGTAATTGTGAAGTTTTAGTAGAATGTACCAGTATGCTAGTGGACTTGATACGACTAGAGTTACAGAGGAAGGAAGTGGTTTTCAGAAAACCAAGCTTTGTTGAAGTGGTTTTTAGAGGTATGAGGAAGGTCGTTCCTAAGAGTTTAATCTCAGTTTTGAAAGCTGAGAAATTGCTGAGGAAAGGTTGCACATCGTTTCTTGCAAATGTGGTAGTAATGCAAAGAGAAAAGCTGAAGCCAGAAGATGTTTCTATGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGCCACCTGATAGAGAGATCGAGTTCACTATTGAACTTTTACCAGGGATAGCACCTATTTCACAGGCACCATATAAAATGGCTCCAAGCGAGCTTAAAGAATTGAAGGTGCAGTTACAAAAACTGGTTGACAAAGGATACATCAGACCTAGTGTAACGACTTAG

Protein sequence

MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQRKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQREKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKELKVQLQKLVDKGYIRPSVTT

Homology

[Close]

BLAST of Cmc08g0225751.1 vs. NCBI nr
Match: KAA0067825.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.7e-75
Identity = 162/194 (83.51%), Postives = 166/194 (85.57%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ             
Sbjct: 137 MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQRLDVNLGMDFLFA 196

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ
Sbjct: 197 HYASIDCNRKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 256

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 174
           REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL
Sbjct: 257 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 316

[Close]

BLAST of Cmc08g0225751.1 vs. NCBI nr
Match: TYK27290.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 4.3e-73
Identity = 154/198 (77.78%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ             
Sbjct: 423 MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFA 482

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKP F EVVFRGMRK V +SLISVLKAEKLLRKGCT+FLA++VV+Q
Sbjct: 483 HYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQ 542

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 178
           REKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKEL
Sbjct: 543 REKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKEL 602

[Close]

BLAST of Cmc08g0225751.1 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 4.3e-73
Identity = 154/198 (77.78%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ             
Sbjct: 155 MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFA 214

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKP F EVVFRGMRK V +SLISVLKAEKLLRKGCT+FLA++VV+Q
Sbjct: 215 HYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQ 274

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 178
           REKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKEL
Sbjct: 275 REKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKEL 334

[Close]

BLAST of Cmc08g0225751.1 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 4.3e-73
Identity = 154/198 (77.78%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ             
Sbjct: 494 MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFA 553

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKP F EVVFRGMRK V +SLISVLKAEKLLRKGCT+FLA++VV+Q
Sbjct: 554 HYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQ 613

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 178
           REKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKEL
Sbjct: 614 REKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKEL 673

[Close]

BLAST of Cmc08g0225751.1 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 4.3e-73
Identity = 154/198 (77.78%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ             
Sbjct: 494 MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFA 553

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKP F EVVFRGMRK V +SLISVLKAEKLLRKGCT+FLA++VV+Q
Sbjct: 554 HYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQ 613

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 178
           REKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKEL
Sbjct: 614 REKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKEL 673

[Close]

BLAST of Cmc08g0225751.1 vs. ExPASy TrEMBL
Match: A0A5A7VQ47 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00300 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.3e-75
Identity = 162/194 (83.51%), Postives = 166/194 (85.57%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ             
Sbjct: 137 MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQRLDVNLGMDFLFA 196

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ
Sbjct: 197 HYASIDCNRKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 256

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 174
           REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL
Sbjct: 257 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 316

[Close]

BLAST of Cmc08g0225751.1 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.1e-73
Identity = 154/198 (77.78%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ             
Sbjct: 456 MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFA 515

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKP F EVVFRGMRK V +SLISVLKAEKLLRKGCT+FLA++VV+Q
Sbjct: 516 HYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQ 575

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 178
           REKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKEL
Sbjct: 576 REKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKEL 635

[Close]

BLAST of Cmc08g0225751.1 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.1e-73
Identity = 154/198 (77.78%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ             
Sbjct: 494 MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFA 553

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKP F EVVFRGMRK V +SLISVLKAEKLLRKGCT+FLA++VV+Q
Sbjct: 554 HYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQ 613

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 178
           REKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKEL
Sbjct: 614 REKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKEL 673

[Close]

BLAST of Cmc08g0225751.1 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.1e-73
Identity = 154/198 (77.78%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ             
Sbjct: 494 MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFA 553

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKP F EVVFRGMRK V +SLISVLKAEKLLRKGCT+FLA++VV+Q
Sbjct: 554 HYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQ 613

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 178
           REKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKEL
Sbjct: 614 REKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKEL 673

[Close]

BLAST of Cmc08g0225751.1 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.1e-73
Identity = 154/198 (77.78%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MLEPLSKGLAIYTPVSDVLLVNEVLRNCEVLVECTSMLVDLIRLELQ------------- 60
           MLEPLS+GLAIYTPV DVLLVNEVLRNCEVLVE  S+LVDL+ LELQ             
Sbjct: 494 MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFA 553

Query: 61  --------RKEVVFRKPSFVEVVFRGMRKVVPKSLISVLKAEKLLRKGCTSFLANVVVMQ 120
                   RKEVVFRKP F EVVFRGMRK V +SLISVLKAEKLLRKGCT+FLA++VV+Q
Sbjct: 554 HYASMDCHRKEVVFRKPGFAEVVFRGMRKAVSRSLISVLKAEKLLRKGCTAFLAHIVVVQ 613

Query: 121 REKLKPEDVSMVKEFLDVFPDDLSGLPPDREIEFTIELLPGIAPISQAPYKMAPSELKEL 178
           REKLKPEDV +VKEFLDVFPDDLSGLPPDREIEFTIELLPG APISQAPY+MAPSELKEL
Sbjct: 614 REKLKPEDVPVVKEFLDVFPDDLSGLPPDREIEFTIELLPGTAPISQAPYRMAPSELKEL 673

The following BLAST results are available for this feature:

BLAST of Cmc08g0225751.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067825.1	2.7e-75	83.51	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27290.1	4.3e-73	77.78	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050527.1	4.3e-73	77.78	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066849.1	4.3e-73	77.78	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	4.3e-73	77.78	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]

BLAST of Cmc08g0225751.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0225751.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VQ47	1.3e-75	83.51	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U2V7	2.1e-73	77.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	2.1e-73	77.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	2.1e-73	77.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	2.1e-73	77.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]

BLAST of Cmc08g0225751.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 124..178 e-value: 1.9E-9 score: 39.6
None	No IPR available	PFAM	PF08284	RVP_2	coord: 3..53 e-value: 6.9E-5 score: 22.7
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 61..176
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 61..176
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 110..176

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc08g0225751	Cmc08g0225751	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0225751.1-exon	Cmc08g0225751.1-exon-CMiso1.1chr08:17099013..17099155	exon
Cmc08g0225751.1-exon	Cmc08g0225751.1-exon-CMiso1.1chr08:17099219..17099612	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc08g0225751.1-cds	Cmc08g0225751.1-cds-CMiso1.1chr08:17099013..17099155	CDS
Cmc08g0225751.1-cds	Cmc08g0225751.1-cds-CMiso1.1chr08:17099219..17099612	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc08g0225751.1	Cmc08g0225751.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding