Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCAGCTAAAATCACATGCAATCGCCTTCTCCTCGTCTTGTTGTTTCTCTTGTGCTTCATTCCCCTTGCAACTCAAGGTAATTTAATGATCACAAAAATGTCTTCTTTTATTCTCTTTAATTTGCATACAAATCCTTAAATATTCTATATTTTTCCTTTTTGAGAGAGTTCAATTTCTTTTAATTTCCATTCAATTTCTTTTAATTTCCAAAGTTTTATCTTTTTAGTTTTAATTGTAATTTCTAAAATTTTAAGTTACAGTCGAGATTAAATATTACTTAATGATGACTATTGATTTTATATCAAAGCACGACGAGAAAGGAATTTTTTCATACAATATGATTCAGTTATATATATATATATATATATATATATATATATATATATATATATATAAATTGTGTATAGGGACAGTTATTTGTGAAGGGGATAATTTAAGAGGGATTTGAAAGAAAAACAATATAATATATATGTATTTATAAGTTAATTAATAATGTTTTTGCATCTGTAGATGCTTAATTAAGTTATTGAACTTGCATTTATAAACTACAATTGGAGTAATTGGACGATCATTAATTTTGATTAAGATGATATGATATTATTGTTTATTTATCTTCTTAACTACTTAACAAGAAAGATGCGATTTTTTCAACCCCACAAAAAAACAATTAATGCTCAGCATCAAAGTCTTACTTTGAAATAATGTTAAGAATCTAATCGATTTATATATGTTTAGATGAGAGGTAAACACTCTGTAAGACATTAATTATCATTTTTGATATAATTTGACCCTCCAACTTTTATTATCGTCGAACTAAATTATTTCATTAATTTAATTTGTTTCTACTATATATAGGCCATCTTTTCATTGATTCATCGTCTTTTATTGTTTCTAATAAGTTTATTTTAATTCTTGCAATAAAAATTTCTATCGAACACACTTAAAATTAAAATAACAATAATAATCATAATATCATGGTGTAGGTTTTAGATTCTCAAATACTTGAACTTTATGTGATATCAGGCCTAAAACAATAATTTAGGTTATAAATTTTCTAATGTTTTTCTTTTCTCACTATTTTGCAGCTCGAAAGCTACCCAAAATGAGTTATACTAACGTTAAAAGTGAAGTGAGAGATGAGGAGTTAAGTCCTACGAATGATGATTCGGTATATCACCTTGATTACTCTCCACCCAAAAAGAACCGTCCAGTTCATAACTAAA mRNA sequence ATGGCAGCTAAAATCACATGCAATCGCCTTCTCCTCGTCTTGTTGTTTCTCTTGTGCTTCATTCCCCTTGCAACTCAAGCTCGAAAGCTACCCAAAATGAGTTATACTAACGTTAAAAGTGAAGTGAGAGATGAGGAGTTAAGTCCTACGAATGATGATTCGGTATATCACCTTGATTACTCTCCACCCAAAAAGAACCGTCCAGTTCATAACTAAA Coding sequence (CDS) ATGGCAGCTAAAATCACATGCAATCGCCTTCTCCTCGTCTTGTTGTTTCTCTTGTGCTTCATTCCCCTTGCAACTCAAGCTCGAAAGCTACCCAAAATGAGTTATACTAACGTTAAAAGTGAAGTGAGAGATGAGGAGTTAAGTCCTACGAATGATGATTCGGTATATCACCTTGATTACTCTCCACCCAAAAAGAACCGTCCAGTTCATAACTAA Protein sequence MAAKITCNRLLLVLLFLLCFIPLATQARKLPKMSYTNVKSEVRDEELSPTNDDSVYHLDYSPPKKNRPVHN
Homology
BLAST of Cmc08g0211761.1 vs. NCBI nr
Match: XP_021641792.1 (root meristem growth factor 9 [Hevea brasiliensis]) HSP 1 Score: 53.5 bits (127), Expect = 8.5e-04 Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 0 Query: 3 AKITCNRLLLVLLFLLCFIPLATQARKLPKMSYTNVKSEVRDEE---------LSPTNDD 62 AK++C LLLV FLLCF+ + +AR L Y N +++D E +P + + Sbjct: 2 AKVSCKNLLLVAFFLLCFVSVGARARSLRVAKYINEVEKIKDHEDNSFTSKGNGAPPDAE 61
Query: 63 SVYHLDYSPPKKNRPVHN 72 + +DY+ PKKN P+HN Sbjct: 62 ELLGMDYTGPKKNPPIHN 79
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_021641792.1 | 8.5e-04 | 37.18 | root meristem growth factor 9 [Hevea brasiliensis] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 40..71 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc08g0211761.1-exon | Cmc08g0211761.1-exon-CMiso1.1chr08:2874630..2874767 | exon |
Cmc08g0211761.1-exon | Cmc08g0211761.1-exon-CMiso1.1chr08:2875777..2875855 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc08g0211761.1-three_prime_utr | Cmc08g0211761.1-three_prime_utr-CMiso1.1chr08:2874630..2874630 | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc08g0211761.1-cds | Cmc08g0211761.1-cds-CMiso1.1chr08:2874631..2874767 | CDS |
Cmc08g0211761.1-cds | Cmc08g0211761.1-cds-CMiso1.1chr08:2875777..2875855 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Cmc08g0211761.1 | Cmc08g0211761.1-protein | polypeptide |
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