Cmc07g0193951.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193951.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 16228491 .. 16229093 (+)
Sequence length	603
RNA-Seq Expression	Cmc07g0193951.1
Synteny	Cmc07g0193951.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAGTCGATTAGAATGCTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATAGATGTCAAGACAACCTTTTTGAATGGAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAAGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGATTTGATACTGCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACATTGTGTTTACAAAAGGATCATCAATTCTACTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGGAATGCTATAGGTCATCTAATTGATATTAAGAAATGGCTAGCTACACAATTCCAAATGAAAGATTTGGGAAACGCACAATACGTTCTTGATATCCAAATAGTTCGGAACCAAAAGAACAAAACACTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCAGAATTCCAAAAAGGGTCTGTTGTCGTACAAATATAGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTTAA

mRNA sequence

ATGATAAAGTCGATTAGAATGCTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATAGATGTCAAGACAACCTTTTTGAATGGAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAAGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGATTTGATACTGCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACATTGTGTTTACAAAAGGATCATCAATTCTACTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGGAATGCTATAGGTCATCTAATTGATATTAAGAAATGGCTAGCTACACAATTCCAAATGAAAGATTTGGGAAACGCACAATACGTTCTTGATATCCAAATAGTTCGGAACCAAAAGAACAAAACACTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCAGAATTCCAAAAAGGGTCTGTTGTCGTACAAATATAGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTTAA

Coding sequence (CDS)

ATGATAAAGTCGATTAGAATGCTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATAGATGTCAAGACAACCTTTTTGAATGGAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAAGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGATTTGATACTGCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACATTGTGTTTACAAAAGGATCATCAATTCTACTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGGAATGCTATAGGTCATCTAATTGATATTAAGAAATGGCTAGCTACACAATTCCAAATGAAAGATTTGGGAAACGCACAATACGTTCTTGATATCCAAATAGTTCGGAACCAAAAGAACAAAACACTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCAGAATTCCAAAAAGGGTCTGTTGTCGTACAAATATAGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTTAA

Protein sequence

MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIGHLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLSYKYRIHLSKEQCPKTP

Homology

[Close]

BLAST of Cmc07g0193951.1 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 363.6 bits (932), Expect = 1.1e-96
Identity = 182/200 (91.00%), Postives = 190/200 (95.00%), Query Frame = 0


Query: 1   MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
           MIKSIR+LLSIATFYDYEIWQ+DVKT FLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVDE CVYKRIINSTVAFLVLYVDDILLIGN + 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
           HL DIK+WL TQFQMKDLG+AQYVL IQIV+N+KNKTLAMSQTSYIDKMLSRYKMQNSKK
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKK 403

Query: 181 GLLSYKYRIHLSKEQCPKTP 201
           GLL Y+Y IHLSKEQCPKTP
Sbjct: 404 GLLPYRYGIHLSKEQCPKTP 423

[Close]

BLAST of Cmc07g0193951.1 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 5.9e-95
Identity = 180/200 (90.00%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
           MIKSIR+LLSIATFYDYEIWQ+DVKTTFLN NLEESIYMVQPE FIQKGQEQK+CKLQKS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
           IYGLKQASRS NIRFDTAIKSYG EQNVDE CVYKRI+NSTVAFLVLYVDDILLIGN +G
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
           HL DIKKWLA QFQMKDLGNAQYVL +QIVRN+KNKTLAMSQTSYIDKMLSRYKM NSKK
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKK 497

Query: 181 GLLSYKYRIHLSKEQCPKTP 201
           GLL Y+Y IHLSKEQCPKTP
Sbjct: 498 GLLPYRYGIHLSKEQCPKTP 517

[Close]

BLAST of Cmc07g0193951.1 vs. NCBI nr
Match: TYK09500.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 353.6 bits (906), Expect = 1.1e-93
Identity = 172/200 (86.00%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
           M+KSIR+LLSIATFYDYEIWQIDVKT FLNGNLEESIYM QPEGFI+KGQEQK+CK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
           IYGLKQASRSWNIRFDTAIKSYGFEQNVD+ CVYK+++NS VAFLVLYVDDILL+GN +G
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
           +L DIKKWLATQFQMKD G+AQYVL IQIVRN+KN+TLAMS+ SYIDKMLSRYKMQNSKK
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRNRKNRTLAMSRASYIDKMLSRYKMQNSKK 180

Query: 181 GLLSYKYRIHLSKEQCPKTP 201
           GLL Y+Y IHLSKEQCPKTP
Sbjct: 181 GLLPYRYGIHLSKEQCPKTP 200

[Close]

BLAST of Cmc07g0193951.1 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 341.7 bits (875), Expect = 4.4e-90
Identity = 168/200 (84.00%), Postives = 185/200 (92.50%), Query Frame = 0


Query: 1    MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
            M+KSIR+LLSIATFY+YEIWQ+DVKT FLNGNLEESIYMVQPEGFI + QEQKVCKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
            IYGLKQASRSWNIRFDTAIKSYGFEQNVDE CVYK+I+NS VAFL+LYVDDILLIGN + 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
            +L D+KKWL TQFQMKDLG AQY+L IQIVRN+KNKTLAMSQ SYIDK+LSRYKMQNSKK
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKK 1073

Query: 181  GLLSYKYRIHLSKEQCPKTP 201
            G L +++ IHLSKEQCPKTP
Sbjct: 1074 GQLPFRHGIHLSKEQCPKTP 1093

[Close]

BLAST of Cmc07g0193951.1 vs. NCBI nr
Match: KAA0061927.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 2.0e-87
Identity = 162/200 (81.00%), Postives = 183/200 (91.50%), Query Frame = 0


Query: 1   MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
           M+KSIR+LLSIATFYDYEIWQ+DVKT FLNGNLE S+YM QP+GFI+ GQEQKVCKLQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
           IY LKQASRSWNI+FDT IK+YGFEQNV+E CVYK+++NS VAFLVLYVDDILLIGN +G
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
           +L DI+KWLATQFQMK LG+AQYVL IQIVRN+KN+TL MSQ SYIDKMLSRYK+Q S K
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKMLSRYKIQKSNK 180

Query: 181 GLLSYKYRIHLSKEQCPKTP 201
           GLLSY+Y IHLSK+QCPKTP
Sbjct: 181 GLLSYRYGIHLSKKQCPKTP 200

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-41
Identity = 90/197 (45.69%), Postives = 129/197 (65.48%), Query Frame = 0


Query: 4    SIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSIYG 63
            SIR +LS+A   D E+ Q+DVKT FL+G+LEE IYM QPEGF   G++  VCKL KS+YG
Sbjct: 903  SIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYG 962

Query: 64   LKQASRSWNIRFDTAIKSYGFEQNVDEHCVY-KRIINSTVAFLVLYVDDILLIGNAIGHL 123
            LKQA R W ++FD+ +KS  + +   + CVY KR   +    L+LYVDD+L++G   G +
Sbjct: 963  LKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLI 1022

Query: 124  IDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKKGL 183
              +K  L+  F MKDLG AQ +L ++IVR + ++ L +SQ  YI+++L R+ M+N+K   
Sbjct: 1023 AKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVS 1082

Query: 184  LSYKYRIHLSKEQCPKT 200
                  + LSK+ CP T
Sbjct: 1083 TPLAGHLKLSKKMCPTT 1099

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 6.1e-26
Identity = 66/179 (36.87%), Postives = 109/179 (60.89%), Query Frame = 0


Query: 2    IKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSI 61
            I S R +LS+   Y+ ++ Q+DVKT FLNG L+E IYM  P+G         VCKL K+I
Sbjct: 981  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAI 1040

Query: 62   YGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVY---KRIINSTVAFLVLYVDDILLIGNA 121
            YGLKQA+R W   F+ A+K   F  +  + C+Y   K  IN  + +++LYVDD+++    
Sbjct: 1041 YGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATGD 1100

Query: 122  IGHLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQN 178
            +  + + K++L  +F+M DL   ++ + I+I    +   + +SQ++Y+ K+LS++ M+N
Sbjct: 1101 MTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMEN 1154

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22
Identity = 63/176 (35.80%), Postives = 98/176 (55.68%), Query Frame = 0


Query: 4    SIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSIYG 63
            SIR++L +A    + I Q+DV   FL G L + +YM QP GFI K +   VCKL+K++YG
Sbjct: 1046 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

Query: 64   LKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIGHLI 123
            LKQA R+W +     + + GF  +V +  ++      ++ ++++YVDDIL+ GN    L 
Sbjct: 1106 LKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLH 1165

Query: 124  DIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSK 180
            +    L+ +F +KD     Y L I+  R      L +SQ  YI  +L+R  M  +K
Sbjct: 1166 NTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG--LHLSQRRYILDLLARTNMITAK 1219

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.0e-22
Identity = 61/179 (34.08%), Postives = 102/179 (56.98%), Query Frame = 0


Query: 4    SIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSIYG 63
            SIR++L +A    + I Q+DV   FL G L + +YM QP GF+ K +   VC+L+K+IYG
Sbjct: 1029 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYG 1088

Query: 64   LKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGN---AIG 123
            LKQA R+W +   T + + GF  ++ +  ++      ++ ++++YVDDIL+ GN    + 
Sbjct: 1089 LKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLK 1148

Query: 124  HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSK 180
            H +D    L+ +F +K+  +  Y L I+  R  +   L +SQ  Y   +L+R  M  +K
Sbjct: 1149 HTLDA---LSQRFSVKEHEDLHYFLGIEAKRVPQG--LHLSQRRYTLDLLARTNMLTAK 1202

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 22  IDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKS 81
           +DV T FLN  ++E IY+ QP GF+ +     V +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 82  YGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIGHLIDIKKWLATQFQMKDLGNA 141
            GF ++  EH +Y R  +    ++ +YVDD+L+   +      +K+ L   + MKDLG  
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 142 QYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSK 180
              L + I     N  + +S   YI K  S  ++   K
Sbjct: 121 DKFLGLNI-HQSSNGDITLSLQDYIAKAASESEINTFK 157

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.2e-97
Identity = 182/200 (91.00%), Postives = 190/200 (95.00%), Query Frame = 0


Query: 1   MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
           MIKSIR+LLSIATFYDYEIWQ+DVKT FLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVDE CVYKRIINSTVAFLVLYVDDILLIGN + 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
           HL DIK+WL TQFQMKDLG+AQYVL IQIV+N+KNKTLAMSQTSYIDKMLSRYKMQNSKK
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKK 403

Query: 181 GLLSYKYRIHLSKEQCPKTP 201
           GLL Y+Y IHLSKEQCPKTP
Sbjct: 404 GLLPYRYGIHLSKEQCPKTP 423

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.9e-95
Identity = 180/200 (90.00%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
           MIKSIR+LLSIATFYDYEIWQ+DVKTTFLN NLEESIYMVQPE FIQKGQEQK+CKLQKS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
           IYGLKQASRS NIRFDTAIKSYG EQNVDE CVYKRI+NSTVAFLVLYVDDILLIGN +G
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
           HL DIKKWLA QFQMKDLGNAQYVL +QIVRN+KNKTLAMSQTSYIDKMLSRYKM NSKK
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKK 497

Query: 181 GLLSYKYRIHLSKEQCPKTP 201
           GLL Y+Y IHLSKEQCPKTP
Sbjct: 498 GLLPYRYGIHLSKEQCPKTP 517

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy TrEMBL
Match: A0A5D3CDT9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G001020 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.4e-94
Identity = 172/200 (86.00%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
           M+KSIR+LLSIATFYDYEIWQIDVKT FLNGNLEESIYM QPEGFI+KGQEQK+CK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
           IYGLKQASRSWNIRFDTAIKSYGFEQNVD+ CVYK+++NS VAFLVLYVDDILL+GN +G
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
           +L DIKKWLATQFQMKD G+AQYVL IQIVRN+KN+TLAMS+ SYIDKMLSRYKMQNSKK
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRNRKNRTLAMSRASYIDKMLSRYKMQNSKK 180

Query: 181 GLLSYKYRIHLSKEQCPKTP 201
           GLL Y+Y IHLSKEQCPKTP
Sbjct: 181 GLLPYRYGIHLSKEQCPKTP 200

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.1e-90
Identity = 168/200 (84.00%), Postives = 185/200 (92.50%), Query Frame = 0


Query: 1    MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
            M+KSIR+LLSIATFY+YEIWQ+DVKT FLNGNLEESIYMVQPEGFI + QEQKVCKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
            IYGLKQASRSWNIRFDTAIKSYGFEQNVDE CVYK+I+NS VAFL+LYVDDILLIGN + 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
            +L D+KKWL TQFQMKDLG AQY+L IQIVRN+KNKTLAMSQ SYIDK+LSRYKMQNSKK
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKK 1073

Query: 181  GLLSYKYRIHLSKEQCPKTP 201
            G L +++ IHLSKEQCPKTP
Sbjct: 1074 GQLPFRHGIHLSKEQCPKTP 1093

[Close]

BLAST of Cmc07g0193951.1 vs. ExPASy TrEMBL
Match: A0A5A7V4T1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002110 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.9e-88
Identity = 162/200 (81.00%), Postives = 183/200 (91.50%), Query Frame = 0


Query: 1   MIKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 60
           M+KSIR+LLSIATFYDYEIWQ+DVKT FLNGNLE S+YM QP+GFI+ GQEQKVCKLQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGNAIG 120
           IY LKQASRSWNI+FDT IK+YGFEQNV+E CVYK+++NS VAFLVLYVDDILLIGN +G
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 HLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQTSYIDKMLSRYKMQNSKK 180
           +L DI+KWLATQFQMK LG+AQYVL IQIVRN+KN+TL MSQ SYIDKMLSRYK+Q S K
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKMLSRYKIQKSNK 180

Query: 181 GLLSYKYRIHLSKEQCPKTP 201
           GLLSY+Y IHLSK+QCPKTP
Sbjct: 181 GLLSYRYGIHLSKKQCPKTP 200

[Close]

BLAST of Cmc07g0193951.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 114.8 bits (286), Expect = 8.1e-26
Identity = 54/155 (34.84%), Postives = 97/155 (62.58%), Query Frame = 0


Query: 2   IKSIRMLLSIATFYDYEIWQIDVKTTFLNGNLEESIYMVQPEGFIQKGQE----QKVCKL 61
           + S++++L+I+  Y++ + Q+D+   FLNG+L+E IYM  P G+  +  +      VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  QKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEHCVYKRIINSTVAFLVLYVDDILLIGN 121
           +KSIYGLKQASR W ++F   +  +GF Q+  +H  + +I  +    +++YVDDI++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 AIGHLIDIKKWLATQFQMKDLGNAQYVLDIQIVRN 153
               + ++K  L + F+++DLG  +Y L ++I R+
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARS 327

[Close]

BLAST of Cmc07g0193951.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.6e-05
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 104 FLVLYVDDILLIGNAIGHLIDIKKWLATQFQMKDLGNAQYVLDIQIVRNQKNKTLAMSQT 163
           +L+LYVDDILL G++   L  +   L++ F MKDLG   Y L IQI  +     L +SQT
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 164 SYIDKMLSRYKMQNSK 180
            Y +++L+   M + K
Sbjct: 62  KYAEQILNNAGMLDCK 75

The following BLAST results are available for this feature:

BLAST of Cmc07g0193951.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045356.1	1.1e-96	91.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	5.9e-95	90.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK09500.1	1.1e-93	86.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	4.4e-90	84.00	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0061927.1	2.0e-87	81.00	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0193951.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-41	45.69	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	6.1e-26	36.87	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.8e-22	35.80	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.0e-22	34.08	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	3.3e-16	32.28	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc07g0193951.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA2	5.2e-97	91.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
A0A5D3BX45	2.9e-95	90.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
A0A5D3CDT9	5.4e-94	86.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G0010...	[more]
E2GK51	2.1e-90	84.00	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7V4T1	9.9e-88	81.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00211...	[more]

BLAST of Cmc07g0193951.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.1e-26	34.84	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.6e-05	40.79	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 3..179 e-value: 3.7E-46 score: 157.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..179
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 17..133

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0193951	Cmc07g0193951	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0193951.1-exon	Cmc07g0193951.1-exon-CMiso1.1chr07:16228491..16229093	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0193951.1-cds	Cmc07g0193951.1-cds-CMiso1.1chr07:16228491..16229093	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0193951.1	Cmc07g0193951.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding