Cmc07g0192971.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0192971.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein
Location	CMiso1.1chr07: 14207893 .. 14208633 (+)
Sequence length	741
RNA-Seq Expression	Cmc07g0192971.1
Synteny	Cmc07g0192971.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCATTGTGAAAAATAGCCAAGGTGAGTTCGTTCCTCCTTATGTTTCAAATAGTTGGTGCATGTGTATCGATTATAGAAAGCTAAACGAGGCAACTCTTAAAGATCACTTCCCTTTACCTTTTCTAGATGAAATGATAGAACAATTAGGAGGAAAATCTTACTTTTGCTTGCTAGATGAATTTTCTGGCTTTTATCAAATACCCATAGCATGCATGGACCAACATAAGACAATTTTTACATGTGAGTTTGGAACTTTTGCTTTTAAAAGAATGCCTTTTGGACTATGTAATGCTCCTACAACATTTCAACGATGCATGTTAAGCATATTCACTGATTTCATAGGAAAATACATAGAAGTGTTCATGGATGATTTTATAGGCTATGGGAAAAATTTTGATTCTTGCTTGAATAGTTCAGAGTTGATTTTAAAGAGATGTATTGATACTAACTTAGTGCTTTACTTTGAAAAATGTCATTTCATGGCTTCTCACGGTATAGTACTAGGTCACTTAGTATCATCTAAGGGAATAGAAGTTGACAAAGCTAAAATCGATTTCATTCAAAACTTTCCCTATCCCACTTGTTTAAAGGATGTTAGATCATTTTTGGGTAGTGCCAGATTTTATAGAAGGTTCATTAAAGACTTTTCCAAGATAGCTTTGCCTTTGACAAATTTGCTTAAAAAAGATGTCCCTTTTGCAATGATGATAAATGTATGCATGCTTTTGATACTTTAA

mRNA sequence

ATGACCATTGTGAAAAATAGCCAAGGTGAGTTCGTTCCTCCTTATGTTTCAAATAGTTGGTGCATGTGTATCGATTATAGAAAGCTAAACGAGGCAACTCTTAAAGATCACTTCCCTTTACCTTTTCTAGATGAAATGATAGAACAATTAGGAGGAAAATCTTACTTTTGCTTGCTAGATGAATTTTCTGGCTTTTATCAAATACCCATAGCATGCATGGACCAACATAAGACAATTTTTACATGTGAGTTTGGAACTTTTGCTTTTAAAAGAATGCCTTTTGGACTATGTAATGCTCCTACAACATTTCAACGATGCATGTTAAGCATATTCACTGATTTCATAGGAAAATACATAGAAGTGTTCATGGATGATTTTATAGGCTATGGGAAAAATTTTGATTCTTGCTTGAATAGTTCAGAGTTGATTTTAAAGAGATGTATTGATACTAACTTAGTGCTTTACTTTGAAAAATGTCATTTCATGGCTTCTCACGGTATAGTACTAGGTCACTTAGTATCATCTAAGGGAATAGAAGTTGACAAAGCTAAAATCGATTTCATTCAAAACTTTCCCTATCCCACTTGTTTAAAGGATGTTAGATCATTTTTGGGTAGTGCCAGATTTTATAGAAGGTTCATTAAAGACTTTTCCAAGATAGCTTTGCCTTTGACAAATTTGCTTAAAAAAGATGTCCCTTTTGCAATGATGATAAATGTATGCATGCTTTTGATACTTTAA

Coding sequence (CDS)

ATGACCATTGTGAAAAATAGCCAAGGTGAGTTCGTTCCTCCTTATGTTTCAAATAGTTGGTGCATGTGTATCGATTATAGAAAGCTAAACGAGGCAACTCTTAAAGATCACTTCCCTTTACCTTTTCTAGATGAAATGATAGAACAATTAGGAGGAAAATCTTACTTTTGCTTGCTAGATGAATTTTCTGGCTTTTATCAAATACCCATAGCATGCATGGACCAACATAAGACAATTTTTACATGTGAGTTTGGAACTTTTGCTTTTAAAAGAATGCCTTTTGGACTATGTAATGCTCCTACAACATTTCAACGATGCATGTTAAGCATATTCACTGATTTCATAGGAAAATACATAGAAGTGTTCATGGATGATTTTATAGGCTATGGGAAAAATTTTGATTCTTGCTTGAATAGTTCAGAGTTGATTTTAAAGAGATGTATTGATACTAACTTAGTGCTTTACTTTGAAAAATGTCATTTCATGGCTTCTCACGGTATAGTACTAGGTCACTTAGTATCATCTAAGGGAATAGAAGTTGACAAAGCTAAAATCGATTTCATTCAAAACTTTCCCTATCCCACTTGTTTAAAGGATGTTAGATCATTTTTGGGTAGTGCCAGATTTTATAGAAGGTTCATTAAAGACTTTTCCAAGATAGCTTTGCCTTTGACAAATTTGCTTAAAAAAGATGTCCCTTTTGCAATGATGATAAATGTATGCATGCTTTTGATACTTTAA

Protein sequence

MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPFAMMINVCMLLIL

Homology

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BLAST of Cmc07g0192971.1 vs. NCBI nr
Match: XP_021603805.1 (uncharacterized protein LOC110608820, partial [Manihot esculenta])

HSP 1 Score: 356.3 bits (913), Expect = 2.1e-94
Identity = 157/234 (67.09%), Postives = 193/234 (82.48%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           +TIV NS+GE VP  V N W +C+DYRKLN  T KDHFPLPF+D+M+E+L GKS++C LD
Sbjct: 431 ITIVPNSEGELVPTRVQNGWRVCMDYRKLNTTTRKDHFPLPFMDQMLERLAGKSHYCCLD 490

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            +SGFYQIP+A  DQ KT FTC FGTFAF+RMPFGLCNAP TFQRCM+SIF+D++ K IE
Sbjct: 491 GYSGFYQIPVAPEDQEKTTFTCPFGTFAFRRMPFGLCNAPATFQRCMMSIFSDYVEKIIE 550

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  YG +F  C+ + E IL RC++TNLVL +EKCHFM +HG++LGH+VS+KGIEV
Sbjct: 551 VFMDDFTVYGNSFHECVANLEKILLRCLETNLVLNYEKCHFMVNHGLILGHIVSAKGIEV 610

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           DKAK+D I+N PYPT ++++RSFLG A FYRRFIKDFSKI  PL  LL++DVPF
Sbjct: 611 DKAKVDTIKNLPYPTSIREIRSFLGHASFYRRFIKDFSKITQPLCRLLQQDVPF 664

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BLAST of Cmc07g0192971.1 vs. NCBI nr
Match: XP_021603241.1 (uncharacterized protein LOC110608326 [Manihot esculenta])

HSP 1 Score: 355.9 bits (912), Expect = 2.8e-94
Identity = 158/234 (67.52%), Postives = 192/234 (82.05%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           +T+  NS+GE VP  V N W +CIDYRKLN  T KDHFPLPF+D+M+E+L GKS+FC LD
Sbjct: 270 ITVRTNSEGESVPTRVQNGWRVCIDYRKLNSVTRKDHFPLPFIDQMLERLAGKSHFCCLD 329

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            FSGFYQIP+A  DQ KT FTC FGTFA++RMPFGLCNAP TFQRCM+SIF++F+ K IE
Sbjct: 330 GFSGFYQIPVAPEDQEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMVSIFSEFVEKIIE 389

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  YG +FD CL +   ILKRC+++NLVL +EKCHFM   G++LGH VS++GIEV
Sbjct: 390 VFMDDFTVYGNSFDECLINLTHILKRCLESNLVLNYEKCHFMVDQGLILGHTVSNRGIEV 449

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           DKAK+D I++ PYPTC++D+RSFLG A FYRRFIKDFS+IA PL  LL+KDVPF
Sbjct: 450 DKAKVDVIKDLPYPTCIRDIRSFLGHAGFYRRFIKDFSRIAQPLCKLLQKDVPF 503

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BLAST of Cmc07g0192971.1 vs. NCBI nr
Match: RZB46718.1 (Transposon Ty3-G Gag-Pol polyprotein [Glycine soja])

HSP 1 Score: 352.1 bits (902), Expect = 4.0e-93
Identity = 156/234 (66.67%), Postives = 190/234 (81.20%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           +T+++N +GE +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E L GKS++C LD
Sbjct: 568 LTVIRNEKGELIPTRVQNSWRVCIDYRRLNQVTKKDHFPLPFIDQMLEHLAGKSHYCFLD 627

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP TFQRCM+SIF+DF+   IE
Sbjct: 628 GFSGYMQITIAPEDQEKTTFTCPFGTFAYRRMPFGLCNAPGTFQRCMISIFSDFLENCIE 687

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEV
Sbjct: 688 VFMDDFTVYGSSFDGCLNSLEKVLNRCIETNLVLNFEKCHFMVEKGIVLGHIISNKGIEV 747

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           D AKI  I   PYP+C+++VRSFLG A FYRRFI+DFSK+ALPL NLL+K+V F
Sbjct: 748 DPAKISVISQLPYPSCVREVRSFLGHAGFYRRFIRDFSKVALPLYNLLQKEVEF 801

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BLAST of Cmc07g0192971.1 vs. NCBI nr
Match: RDX95126.1 (Retrovirus-related Pol polyprotein, partial [Mucuna pruriens])

HSP 1 Score: 350.9 bits (899), Expect = 8.9e-93
Identity = 158/234 (67.52%), Postives = 194/234 (82.91%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           MT++KN Q E VP  + NSW +CIDYR+LN+AT KDHFPLPF+D+M+E++ GKS++C LD
Sbjct: 438 MTVMKNQQDELVPMRIQNSWRVCIDYRRLNQATRKDHFPLPFIDQMLEKIAGKSHYCFLD 497

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            FSG+ QI IA  DQHKT FTC FGTFA+ RMPFGLCNAP+TFQRCM+SIF+D +   +E
Sbjct: 498 GFSGYMQIHIAPEDQHKTTFTCPFGTFAYTRMPFGLCNAPSTFQRCMMSIFSDLLQDCME 557

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  Y ++FD+CLN+   +LKRC+DTNLVL FEKCHFM + GIVLGHLVS++GIEV
Sbjct: 558 VFMDDFTVYAESFDACLNNLSKVLKRCMDTNLVLNFEKCHFMVTEGIVLGHLVSNRGIEV 617

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           DKAKID I + P PT +++VRSFLG A FYRRFIKDFSK+ALPL+ LL+KDV F
Sbjct: 618 DKAKIDVITSLPNPTSIREVRSFLGHAGFYRRFIKDFSKLALPLSTLLQKDVEF 671

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BLAST of Cmc07g0192971.1 vs. NCBI nr
Match: RZB41284.1 (Transposon Ty3-G Gag-Pol polyprotein [Glycine soja])

HSP 1 Score: 350.9 bits (899), Expect = 8.9e-93
Identity = 155/234 (66.24%), Postives = 191/234 (81.62%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           +T+++N + E +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E+L GKS++C LD
Sbjct: 551 LTVIRNEKEELIPTRVQNSWRVCIDYRRLNQVTKKDHFPLPFIDQMLERLAGKSHYCFLD 610

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP TFQRCM+SIF+DF+   IE
Sbjct: 611 GFSGYMQITIAPEDQEKTTFTCPFGTFAYRRMPFGLCNAPGTFQRCMISIFSDFLENCIE 670

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEV
Sbjct: 671 VFMDDFTVYGSSFDGCLNSLEKVLNRCIETNLVLNFEKCHFMVEQGIVLGHIISNKGIEV 730

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           D AKI  I   PYP+C+++VRSFLG A FYRRFI+DFSK+ALPL+NLL+K+V F
Sbjct: 731 DPAKISVISQLPYPSCVREVRSFLGHAGFYRRFIRDFSKVALPLSNLLQKEVEF 784

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BLAST of Cmc07g0192971.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.5e-45
Identity = 87/214 (40.65%), Postives = 133/214 (62.15%), Query Frame = 0


Query: 17  SNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQH 76
           +N + + IDYRKLNE T+ D +P+P +DE++ +LG   YF  +D   GF+QI +      
Sbjct: 258 ANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESIS 317

Query: 77  KTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSC 136
           KT F+ + G + + RMPFGL NAP TFQRCM +I    + K+  V++DD I +  +    
Sbjct: 318 KTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEH 377

Query: 137 LNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTC 196
           LNS +L+  +  D NL L  +KC F+      LGH+V+  GI+ +  K+  I ++P PT 
Sbjct: 378 LNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTK 437

Query: 197 LKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKK 231
            K++R+FLG   +YR+FI +++ IA P+T+ LKK
Sbjct: 438 DKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKK 471

[Close]

BLAST of Cmc07g0192971.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.1e-44
Identity = 86/209 (41.15%), Postives = 129/209 (61.72%), Query Frame = 0


Query: 24  IDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFTCE 83
           IDYRKLNE T+ D  P+P +DE++ +LG  +YF  +D   GF+QI +      KT F+ +
Sbjct: 266 IDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTK 325

Query: 84  FGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSELI 143
            G + + RMPFGL NAP TFQRCM  I    + K+  V++DD I +  + D  L S  L+
Sbjct: 326 HGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLV 385

Query: 144 LKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSF 203
            ++    NL L  +KC F+      LGH+++  GI+ +  KI+ IQ +P PT  K++++F
Sbjct: 386 FEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAF 445

Query: 204 LGSARFYRRFIKDFSKIALPLTNLLKKDV 233
           LG   +YR+FI +F+ IA P+T  LKK++
Sbjct: 446 LGLTGYYRKFIPNFADIAKPMTKCLKKNM 474

[Close]

BLAST of Cmc07g0192971.1 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.2e-41
Identity = 81/216 (37.50%), Postives = 128/216 (59.26%), Query Frame = 0


Query: 14  PYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACM 73
           P     + M +D+++LN  T+ D +P+P ++  +  LG   YF  LD  SGF+QI +   
Sbjct: 172 PNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKES 231

Query: 74  DQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNF 133
           D  KT F+   G + F R+PFGL NAP  FQR +  I  + IGK   V++DD I + +++
Sbjct: 232 DIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDY 291

Query: 134 DSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPY 193
           D+   +  L+L      NL +  EK HF+ +    LG++V++ GI+ D  K+  I   P 
Sbjct: 292 DTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPP 351

Query: 194 PTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLK 230
           PT +K+++ FLG   +YR+FI+D++K+A PLTNL +
Sbjct: 352 PTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of Cmc07g0192971.1 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-40
Identity = 85/208 (40.87%), Postives = 124/208 (59.62%), Query Frame = 0


Query: 22  MCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTIFT 81
           + ID+RKLNE T+ D +P+P +  ++  LG   +F  LD  SG++QI +A  D+ KT F+
Sbjct: 239 LVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFS 298

Query: 82  CEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNSSE 141
              G + F R+PFGL NA + FQR +  +  + IGK   V++DD I + +N    +   +
Sbjct: 299 VNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHID 358

Query: 142 LILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKDVR 201
            +LK  ID N+ +  EK  F       LG +VS  G + D  K+  IQ +P P C+  VR
Sbjct: 359 TVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVR 418

Query: 202 SFLGSARFYRRFIKDFSKIALPLTNLLK 230
           SFLG A +YR FIKDF+ IA P+T++LK
Sbjct: 419 SFLGLASYYRVFIKDFAAIARPITDILK 446

[Close]

BLAST of Cmc07g0192971.1 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.6e-39
Identity = 85/215 (39.53%), Postives = 120/215 (55.81%), Query Frame = 0


Query: 20  WCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLDEFSGFYQIPIACMDQHKTI 79
           W + IDYR++N+  L D FPLP +D++++QLG   YF  LD  SGF+QI +    +  T 
Sbjct: 370 WRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITS 429

Query: 80  FTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIEVFMDDFIGYGKNFDSCLNS 139
           F+   G++ F R+PFGL  AP +FQR M   F+        ++MDD I  G +    L +
Sbjct: 430 FSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKN 489

Query: 140 SELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEVDKAKIDFIQNFPYPTCLKD 199
              +  +C + NL L+ EKC F       LGH  + KGI  D  K D IQN+P P     
Sbjct: 490 LTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADS 549

Query: 200 VRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
            R F+    +YRRFIK+F+  +  +T L KK+VPF
Sbjct: 550 ARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPF 584

[Close]

BLAST of Cmc07g0192971.1 vs. ExPASy TrEMBL
Match: A0A445FCZ8 (Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_050671 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.9e-93
Identity = 156/234 (66.67%), Postives = 190/234 (81.20%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           +T+++N +GE +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E L GKS++C LD
Sbjct: 568 LTVIRNEKGELIPTRVQNSWRVCIDYRRLNQVTKKDHFPLPFIDQMLEHLAGKSHYCFLD 627

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP TFQRCM+SIF+DF+   IE
Sbjct: 628 GFSGYMQITIAPEDQEKTTFTCPFGTFAYRRMPFGLCNAPGTFQRCMISIFSDFLENCIE 687

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEV
Sbjct: 688 VFMDDFTVYGSSFDGCLNSLEKVLNRCIETNLVLNFEKCHFMVEKGIVLGHIISNKGIEV 747

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           D AKI  I   PYP+C+++VRSFLG A FYRRFI+DFSK+ALPL NLL+K+V F
Sbjct: 748 DPAKISVISQLPYPSCVREVRSFLGHAGFYRRFIRDFSKVALPLYNLLQKEVEF 801

[Close]

BLAST of Cmc07g0192971.1 vs. ExPASy TrEMBL
Match: A0A371GXE8 (Retrovirus-related Pol polyprotein (Fragment) OS=Mucuna pruriens OX=157652 GN=pol PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 4.3e-93
Identity = 158/234 (67.52%), Postives = 194/234 (82.91%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           MT++KN Q E VP  + NSW +CIDYR+LN+AT KDHFPLPF+D+M+E++ GKS++C LD
Sbjct: 438 MTVMKNQQDELVPMRIQNSWRVCIDYRRLNQATRKDHFPLPFIDQMLEKIAGKSHYCFLD 497

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            FSG+ QI IA  DQHKT FTC FGTFA+ RMPFGLCNAP+TFQRCM+SIF+D +   +E
Sbjct: 498 GFSGYMQIHIAPEDQHKTTFTCPFGTFAYTRMPFGLCNAPSTFQRCMMSIFSDLLQDCME 557

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  Y ++FD+CLN+   +LKRC+DTNLVL FEKCHFM + GIVLGHLVS++GIEV
Sbjct: 558 VFMDDFTVYAESFDACLNNLSKVLKRCMDTNLVLNFEKCHFMVTEGIVLGHLVSNRGIEV 617

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           DKAKID I + P PT +++VRSFLG A FYRRFIKDFSK+ALPL+ LL+KDV F
Sbjct: 618 DKAKIDVITSLPNPTSIREVRSFLGHAGFYRRFIKDFSKLALPLSTLLQKDVEF 671

[Close]

BLAST of Cmc07g0192971.1 vs. ExPASy TrEMBL
Match: A0A445LR48 (Transposon Ty3-G Gag-Pol polyprotein OS=Glycine soja OX=3848 GN=D0Y65_004303 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 4.3e-93
Identity = 155/234 (66.24%), Postives = 191/234 (81.62%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           +T+++N + E +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E+L GKS++C LD
Sbjct: 175 LTVIRNEKEELIPTRVQNSWRVCIDYRRLNQVTKKDHFPLPFIDQMLERLAGKSHYCFLD 234

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP TFQRCM+SIF+DF+   IE
Sbjct: 235 GFSGYMQITIAPEDQEKTTFTCPFGTFAYRRMPFGLCNAPGTFQRCMISIFSDFLENCIE 294

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEV
Sbjct: 295 VFMDDFTVYGSSFDGCLNSLEKVLNRCIETNLVLNFEKCHFMVEQGIVLGHIISNKGIEV 354

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           D AKI  I   PYP+C+++VRSFLG A FYRRFI+DFSK+ALPL+NLL+K+V F
Sbjct: 355 DPAKISVISQLPYPSCVREVRSFLGHAGFYRRFIRDFSKVALPLSNLLQKEVEF 408

[Close]

BLAST of Cmc07g0192971.1 vs. ExPASy TrEMBL
Match: A0A445EY74 (Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_055343 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 4.3e-93
Identity = 155/234 (66.24%), Postives = 191/234 (81.62%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           +T+++N + E +P  V NSW +CIDYR+LN+ T KDHFPLPF+D+M+E+L GKS++C LD
Sbjct: 551 LTVIRNEKEELIPTRVQNSWRVCIDYRRLNQVTKKDHFPLPFIDQMLERLAGKSHYCFLD 610

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            FSG+ QI IA  DQ KT FTC FGTFA++RMPFGLCNAP TFQRCM+SIF+DF+   IE
Sbjct: 611 GFSGYMQITIAPEDQEKTTFTCPFGTFAYRRMPFGLCNAPGTFQRCMISIFSDFLENCIE 670

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  YG +FD CLNS E +L RCI+TNLVL FEKCHFM   GIVLGH++S+KGIEV
Sbjct: 671 VFMDDFTVYGSSFDGCLNSLEKVLNRCIETNLVLNFEKCHFMVEQGIVLGHIISNKGIEV 730

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           D AKI  I   PYP+C+++VRSFLG A FYRRFI+DFSK+ALPL+NLL+K+V F
Sbjct: 731 DPAKISVISQLPYPSCVREVRSFLGHAGFYRRFIRDFSKVALPLSNLLQKEVEF 784

[Close]

BLAST of Cmc07g0192971.1 vs. ExPASy TrEMBL
Match: A0A0L9TXH6 (Reverse transcriptase OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g135600 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 5.6e-93
Identity = 155/234 (66.24%), Postives = 192/234 (82.05%), Query Frame = 0


Query: 1   MTIVKNSQGEFVPPYVSNSWCMCIDYRKLNEATLKDHFPLPFLDEMIEQLGGKSYFCLLD 60
           +T++KN + E +P  V NSW +CIDYR+LN+AT KDHFPLPF+D+M+E+L GKS++C LD
Sbjct: 677 LTVIKNEKDELIPTRVQNSWRVCIDYRRLNQATRKDHFPLPFIDQMLERLAGKSHYCFLD 736

Query: 61  EFSGFYQIPIACMDQHKTIFTCEFGTFAFKRMPFGLCNAPTTFQRCMLSIFTDFIGKYIE 120
            FSG++QI I+  DQ KT FTC FGTFA++RMPFGLCNAP TFQRCMLSIF+DF+   IE
Sbjct: 737 GFSGYFQINISPEDQEKTTFTCPFGTFAYRRMPFGLCNAPGTFQRCMLSIFSDFLENCIE 796

Query: 121 VFMDDFIGYGKNFDSCLNSSELILKRCIDTNLVLYFEKCHFMASHGIVLGHLVSSKGIEV 180
           VFMDDF  YG +FD+CL+S + +L+RCIDTNLVL FEKCHFM   G+VLGH++SSKGIEV
Sbjct: 797 VFMDDFTVYGSSFDTCLDSLKKVLQRCIDTNLVLNFEKCHFMVEQGLVLGHIISSKGIEV 856

Query: 181 DKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFIKDFSKIALPLTNLLKKDVPF 235
           D AKI  I   PYP+C+++VRSFLG A FYRRFIKDFSK  LPL+ LL+KD+ F
Sbjct: 857 DPAKISVISQLPYPSCMREVRSFLGHAGFYRRFIKDFSKKTLPLSKLLQKDIEF 910

[Close]

BLAST of Cmc07g0192971.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-11
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 157 EKCHFMASHGIVLG--HLVSSKGIEVDKAKIDFIQNFPYPTCLKDVRSFLGSARFYRRFI 216
           +KC F       LG  H++S +G+  D AK++ +  +P P    ++R FLG   +YRRF+
Sbjct: 21  KKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFV 80

Query: 217 KDFSKIALPLTNLLKKD 232
           K++ KI  PLT LLKK+
Sbjct: 81  KNYGKIVRPLTELLKKN 97

The following BLAST results are available for this feature:

BLAST of Cmc07g0192971.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021603805.1	2.1e-94	67.09	uncharacterized protein LOC110608820, partial [Manihot esculenta]	[more]
XP_021603241.1	2.8e-94	67.52	uncharacterized protein LOC110608326 [Manihot esculenta]	[more]
RZB46718.1	4.0e-93	66.67	Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]	[more]
RDX95126.1	8.9e-93	67.52	Retrovirus-related Pol polyprotein, partial [Mucuna pruriens]	[more]
RZB41284.1	8.9e-93	66.24	Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]	[more]

BLAST of Cmc07g0192971.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.5e-45	40.65	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.1e-44	41.15	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	8.2e-41	37.50	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	2.4e-40	40.87	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P10394	1.6e-39	39.53	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of Cmc07g0192971.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445FCZ8	1.9e-93	66.67	Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_050671 PE=4 SV=1	[more]
A0A371GXE8	4.3e-93	67.52	Retrovirus-related Pol polyprotein (Fragment) OS=Mucuna pruriens OX=157652 GN=po...	[more]
A0A445LR48	4.3e-93	66.24	Transposon Ty3-G Gag-Pol polyprotein OS=Glycine soja OX=3848 GN=D0Y65_004303 PE=...	[more]
A0A445EY74	4.3e-93	66.24	Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_055343 PE=4 SV=1	[more]
A0A0L9TXH6	5.6e-93	66.24	Reverse transcriptase OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g135600 PE=4...	[more]

BLAST of Cmc07g0192971.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.3e-11	40.26	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 182..239 e-value: 6.5E-17 score: 63.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 38..173 e-value: 1.2E-47 score: 164.0
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 21..165 e-value: 2.3E-15 score: 56.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 17..98 e-value: 1.2E-47 score: 164.0
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..232
None	No IPR available	PANTHER	PTHR24559:SF363	SUBFAMILY NOT NAMED	coord: 3..232
None	No IPR available	CDD	cd01647	RT_LTR	coord: 17..173 e-value: 2.05964E-64 score: 196.662
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 17..235

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0192971	Cmc07g0192971	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192971.1-exon	Cmc07g0192971.1-exon-CMiso1.1chr07:14207893..14208633	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192971.1-cds	Cmc07g0192971.1-cds-CMiso1.1chr07:14207893..14208633	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192971.1	Cmc07g0192971.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding