Cmc07g0192511.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0192511.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 13269627 .. 13269968 (-)
Sequence length	342
RNA-Seq Expression	Cmc07g0192511.1
Synteny	Cmc07g0192511.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTACGCAATGTTATGTACTAGACCTGACATTTGCTATTCAGTAGGGATTGTTAGTAGATATCAGTCCAATCCTAGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATATCTTATAAGAACAAAACACTACATGTTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATCAAGATGCTATAAAGTCTACATCAGGATCAGTTTTCACTTTGAACGAAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGGAAGCTGAATATGTAG

mRNA sequence

ATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTACGCAATGTTATGTACTAGACCTGACATTTGCTATTCAGTAGGGATTGTTAGTAGATATCAGTCCAATCCTAGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATATCTTATAAGAACAAAACACTACATGTTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATCAAGATGCTATAAAGTCTACATCAGGATCAGTTTTCACTTTGAACGAAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGGAAGCTGAATATGTAG

Coding sequence (CDS)

ATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTACGCAATGTTATGTACTAGACCTGACATTTGCTATTCAGTAGGGATTGTTAGTAGATATCAGTCCAATCCTAGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATATCTTATAAGAACAAAACACTACATGTTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATCAAGATGCTATAAAGTCTACATCAGGATCAGTTTTCACTTTGAACGAAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGGAAGCTGAATATGTAG

Protein sequence

MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYMFVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQSWKLNM

Homology

[Close]

BLAST of Cmc07g0192511.1 vs. NCBI nr
Match: TYK14490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYASA+GSLMYAMLCTRPDICYSVGIVS+YQSNP RDHWTAVKNILKYL RTK YM
Sbjct: 1   MSNIPYASAIGSLMYAMLCTRPDICYSVGIVSKYQSNPGRDHWTAVKNILKYLRRTKDYM 60

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQS------WKLNM 114
           FVYGSKDLILT  TDSDFQ+D++A KSTSGSVFTLN GAVVWRSIKQS      WKLNM
Sbjct: 61  FVYGSKDLILTRNTDSDFQSDKNARKSTSGSVFTLNGGAVVWRSIKQSYIDDSLWKLNM 119

[Close]

BLAST of Cmc07g0192511.1 vs. NCBI nr
Match: TYK11050.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 97/108 (89.81%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYASA+GSLMYAMLCTR DICYSVGIV+RYQSNP RDHWTAVKNILKYL RTK YM
Sbjct: 168 MSNIPYASAIGSLMYAMLCTRVDICYSVGIVNRYQSNPGRDHWTAVKNILKYLRRTKDYM 227

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQS 109
            VYGSKDLILTGYTDSDFQTD+DA KSTSGS+FTLNEGAVVW+SIKQS
Sbjct: 228 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSIFTLNEGAVVWKSIKQS 275

[Close]

BLAST of Cmc07g0192511.1 vs. NCBI nr
Match: KAA0026227.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30725.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNP RDHWTAVKNILKYL RTK YM
Sbjct: 47  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 106

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQSW 110
            VYGSKDLILT YT+ DFQTD+DA KSTSGSVFTLNEGAVVWRSIKQS+
Sbjct: 107 LVYGSKDLILTRYTNFDFQTDKDARKSTSGSVFTLNEGAVVWRSIKQSY 155

[Close]

BLAST of Cmc07g0192511.1 vs. NCBI nr
Match: KAA0046768.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 3.4e-47
Identity = 98/108 (90.74%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYASA+GSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKY  RTK YM
Sbjct: 373 MSNIPYASAIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYHRRTKDYM 432

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQS 109
            VYGSKDLILTGYTDSDFQTD+DA KST GSVFTLN  AVVWRSIKQS
Sbjct: 433 LVYGSKDLILTGYTDSDFQTDKDARKSTLGSVFTLNGAAVVWRSIKQS 480

[Close]

BLAST of Cmc07g0192511.1 vs. NCBI nr
Match: TYK06386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 98/108 (90.74%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYA AVGSLMYAMLCTRPDICYSVGIVSRYQSNP RDHWT VKNILKYL RTK YM
Sbjct: 151 MSNIPYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYM 210

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQS 109
            VYGSKDLIL GYTDSDFQTD+DA KSTSGSVFTLN GAVVWRSIKQS
Sbjct: 211 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQS 258

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-26
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1    MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
            M+ +PY+SAVGSLMYAM+CTRPDI ++VG+VSR+  NP ++HW AVK IL+YL  T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRS 105
              +G  D IL GYTD+D   D D  KS++G +FT + GA+ W+S
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQS 1209

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-20
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           M N+PY SAVG++MY M+ TRPD+  +VG++S++ S+P   HW A+K +L+YL  T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  FVYGSKDLI-LTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQ 108
             +       L GY+D+D+  D ++ +STSG +F LN G V WRS KQ
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQ 108

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRT-KHYMFVYG 65
            Y   VGSL Y +  TRPD+ Y+V  +S+Y   P  DHW A+K +L+YL  T  H +F+  
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQ 108
               L L  Y+D+D+  D D   ST+G +  L    + W S KQ
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQ 1329

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-11
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 3    NIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYMFV 62
            N P  S +G LMY MLCTRPD+  +V I+SRY S    + W  +K +L+YL  T     +
Sbjct: 1178 NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLI 1237

Query: 63   YGSKDLI----LTGYTDSDFQTDQDAIKSTSGSVFTLNE-GAVVWRSIKQS 109
            +  K+L     + GY DSD+   +   KST+G +F + +   + W + +Q+
Sbjct: 1238 F-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQN 1287

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-11
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRT-KHYMFVYG 65
            Y   VGSL Y +  TRPDI Y+V  +S++   P  +H  A+K IL+YL  T  H +F+  
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQ 108
               L L  Y+D+D+  D+D   ST+G +  L    + W S KQ
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQ 1346

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy TrEMBL
Match: A0A5A7SNE2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00570 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNP RDHWTAVKNILKYL RTK YM
Sbjct: 47  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 106

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQSW 110
            VYGSKDLILT YT+ DFQTD+DA KSTSGSVFTLNEGAVVWRSIKQS+
Sbjct: 107 LVYGSKDLILTRYTNFDFQTDKDARKSTSGSVFTLNEGAVVWRSIKQSY 155

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy TrEMBL
Match: A0A5D3CST8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00010 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYASA+GSLMYAMLCTRPDICYSVGIVS+YQSNP RDHWTAVKNILKYL RTK YM
Sbjct: 1   MSNIPYASAIGSLMYAMLCTRPDICYSVGIVSKYQSNPGRDHWTAVKNILKYLRRTKDYM 60

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQS------WKLNM 114
           FVYGSKDLILT  TDSDFQ+D++A KSTSGSVFTLN GAVVWRSIKQS      WKLNM
Sbjct: 61  FVYGSKDLILTRNTDSDFQSDKNARKSTSGSVFTLNGGAVVWRSIKQSYIDDSLWKLNM 119

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy TrEMBL
Match: A0A5D3CI71 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 97/108 (89.81%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYASA+GSLMYAMLCTR DICYSVGIV+RYQSNP RDHWTAVKNILKYL RTK YM
Sbjct: 168 MSNIPYASAIGSLMYAMLCTRVDICYSVGIVNRYQSNPGRDHWTAVKNILKYLRRTKDYM 227

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQS 109
            VYGSKDLILTGYTDSDFQTD+DA KSTSGS+FTLNEGAVVW+SIKQS
Sbjct: 228 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSIFTLNEGAVVWKSIKQS 275

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy TrEMBL
Match: A0A5A7TV73 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00520 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 98/108 (90.74%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYASA+GSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKY  RTK YM
Sbjct: 373 MSNIPYASAIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYHRRTKDYM 432

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQS 109
            VYGSKDLILTGYTDSDFQTD+DA KST GSVFTLN  AVVWRSIKQS
Sbjct: 433 LVYGSKDLILTGYTDSDFQTDKDARKSTLGSVFTLNGAAVVWRSIKQS 480

[Close]

BLAST of Cmc07g0192511.1 vs. ExPASy TrEMBL
Match: A0A5A7VMF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00220 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.3e-47
Identity = 97/108 (89.81%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLIRTKHYM 60
           MSNIPYASA+GSLMYAMLCTRP+ICYSVGIVSRYQSNP RDHWTAVKNILKYL RTK YM
Sbjct: 439 MSNIPYASALGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKEYM 498

Query: 61  FVYGSKDLILTGYTDSDFQTDQDAIKSTSGSVFTLNEGAVVWRSIKQS 109
            VYGSKDLILTGY D DFQTD+DA KSTSGSVFTLN GAVVWRSIKQS
Sbjct: 499 LVYGSKDLILTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQS 546

The following BLAST results are available for this feature:

BLAST of Cmc07g0192511.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14490.1	1.5e-47	84.87	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK11050.1	1.5e-47	89.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0026227.1	1.5e-47	90.83	gag/pol protein [Cucumis melo var. makuwa] >TYK30725.1 gag/pol protein [Cucumis ...	[more]
KAA0046768.1	3.4e-47	90.74	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK06386.1	1.3e-46	90.74	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0192511.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.7e-26	53.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	2.2e-20	45.37	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	1.7e-12	39.81	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.1e-11	36.04	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	7.0e-11	38.83	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc07g0192511.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNE2	7.4e-48	90.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0057...	[more]
A0A5D3CST8	7.4e-48	84.87	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00010...	[more]
A0A5D3CI71	7.4e-48	89.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330...	[more]
A0A5A7TV73	1.6e-47	90.74	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G0052...	[more]
A0A5A7VMF5	6.3e-47	89.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G0022...	[more]

BLAST of Cmc07g0192511.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 13..92
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 13..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0192511	Cmc07g0192511	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192511.1-exon	Cmc07g0192511.1-exon-CMiso1.1chr07:13269627..13269968	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192511.1-cds	Cmc07g0192511.1-cds-CMiso1.1chr07:13269627..13269968	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0192511.1	Cmc07g0192511.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding