Cmc07g0191461.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0191461.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 11227615 .. 11228064 (-)
Sequence length	450
RNA-Seq Expression	Cmc07g0191461.1
Synteny	Cmc07g0191461.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCAAGACAGCCTTTTTAAATGGAAATCTTGAGAAGAGTATCTATCTGGTTCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAGGGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACTAGCATCTAAATTCTGGAATATAAGATTTGATACTACGATCAAATCTTATGGTTTTGAACAAAATGTTGCTGAACCTTGTGTTTACAAAAGAATCATCAAATCTACTGTAGTATTCTTAGTTCTGTATGTAGATAACATTCTACTCATTGGGAATGATGTAGGTAATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGAAACCGAAAGAACAAAACACTAGTCATGTCTCAAACATCTTATATAGACAAAATGTTGTGA

mRNA sequence

ATGGATGTCAAGACAGCCTTTTTAAATGGAAATCTTGAGAAGAGTATCTATCTGGTTCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAGGGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACTAGCATCTAAATTCTGGAATATAAGATTTGATACTACGATCAAATCTTATGGTTTTGAACAAAATGTTGCTGAACCTTGTGTTTACAAAAGAATCATCAAATCTACTGTAGTATTCTTAGTTCTGTATGTAGATAACATTCTACTCATTGGGAATGATGTAGGTAATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGAAACCGAAAGAACAAAACACTAGTCATGTCTCAAACATCTTATATAGACAAAATGTTGTGA

Coding sequence (CDS)

ATGGATGTCAAGACAGCCTTTTTAAATGGAAATCTTGAGAAGAGTATCTATCTGGTTCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAGGGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACTAGCATCTAAATTCTGGAATATAAGATTTGATACTACGATCAAATCTTATGGTTTTGAACAAAATGTTGCTGAACCTTGTGTTTACAAAAGAATCATCAAATCTACTGTAGTATTCTTAGTTCTGTATGTAGATAACATTCTACTCATTGGGAATGATGTAGGTAATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGAAACCGAAAGAACAAAACACTAGTCATGTCTCAAACATCTTATATAGACAAAATGTTGTGA

Protein sequence

MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKSYGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQTSYIDKML

Homology

[Close]

BLAST of Cmc07g0191461.1 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 130/149 (87.25%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
           MDVKTAFLNGNLE+SIY+VQPEGFIQKGQEQ+VCKLQKSIYGLK AS+ WNIRFDT IKS
Sbjct: 245 MDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKS 304

Query: 61  YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
           YGFEQNV EPCVYKRII STV FLVLYVD+ILLIGN+V +LTDIK+WL TQFQMKDLG+A
Sbjct: 305 YGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVDHLTDIKEWLDTQFQMKDLGSA 364

Query: 121 QYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
           QYVLGIQIV+NRKNKTL MSQTSYIDKML
Sbjct: 365 QYVLGIQIVQNRKNKTLAMSQTSYIDKML 393

[Close]

BLAST of Cmc07g0191461.1 vs. NCBI nr
Match: KAA0063026.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-64
Identity = 126/148 (85.14%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
           MDVK AFLNGNLE+SIY+VQPEG IQKGQEQ+VCKLQKSIYGLK AS+ WNIRFD  IKS
Sbjct: 367 MDVKIAFLNGNLEESIYMVQPEGLIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDNAIKS 426

Query: 61  YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
           YGF+QNV EPCVYKRI  STV FLVLYVD ILLIGNDV  LTDIKKWLATQFQMKDLGNA
Sbjct: 427 YGFKQNVEEPCVYKRITNSTVAFLVLYVDEILLIGNDVDRLTDIKKWLATQFQMKDLGNA 486

Query: 121 QYVLGIQIVRNRKNKTLVMSQTSYIDKM 149
           QYVLGIQ VRNRKNKTL MSQTSYID +
Sbjct: 487 QYVLGIQTVRNRKNKTLTMSQTSYIDML 514

[Close]

BLAST of Cmc07g0191461.1 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 3.1e-64
Identity = 126/149 (84.56%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
           MDVKT FLN NLE+SIY+VQPE FIQKGQEQ++CKLQKSIYGLK AS+  NIRFDT IKS
Sbjct: 339 MDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKS 398

Query: 61  YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
           YG EQNV EPCVYKRI+ STV FLVLYVD+ILLIGNDVG+L DIKKWLA QFQMKDLGNA
Sbjct: 399 YGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNA 458

Query: 121 QYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
           QYVLG+QIVRNRKNKTL MSQTSYIDKML
Sbjct: 459 QYVLGVQIVRNRKNKTLAMSQTSYIDKML 487

[Close]

BLAST of Cmc07g0191461.1 vs. NCBI nr
Match: TYK09500.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 9.0e-64
Identity = 120/149 (80.54%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
           +DVKTAFLNGNLE+SIY+ QPEGFI+KGQEQ++CK QKSIYGLK AS+ WNIRFDT IKS
Sbjct: 22  IDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKSIYGLKQASRSWNIRFDTAIKS 81

Query: 61  YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
           YGFEQNV +PCVYK+++ S V FLVLYVD+ILL+GNDVG LTDIKKWLATQFQMKD G+A
Sbjct: 82  YGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVGYLTDIKKWLATQFQMKDFGDA 141

Query: 121 QYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
           QYVLGIQIVRNRKN+TL MS+ SYIDKML
Sbjct: 142 QYVLGIQIVRNRKNRTLAMSRASYIDKML 170

[Close]

BLAST of Cmc07g0191461.1 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 252.3 bits (643), Expect = 2.6e-63
Identity = 122/149 (81.88%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1    MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
            MDVKTAFLNGNLE+SIY+VQPEGFI + QEQ+VCKLQKSIYGLK AS+ WNIRFDT IKS
Sbjct: 915  MDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKS 974

Query: 61   YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
            YGFEQNV EPCVYK+I+ S V FL+LYVD+ILLIGNDV  LTD+KKWL TQFQMKDLG A
Sbjct: 975  YGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEA 1034

Query: 121  QYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
            QY+LGIQIVRNRKNKTL MSQ SYIDK+L
Sbjct: 1035 QYILGIQIVRNRKNKTLAMSQASYIDKVL 1063

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-34
Identity = 71/150 (47.33%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 1    MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
            +DVKTAFL+G+LE+ IY+ QPEGF   G++  VCKL KS+YGLK A + W ++FD+ +KS
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   YGFEQNVAEPCVY-KRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGN 120
              + +  ++PCVY KR  ++  + L+LYVD++L++G D G +  +K  L+  F MKDLG 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  AQYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
            AQ +LG++IVR R ++ L +SQ  YI+++L
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVL 1070

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-20
Identity = 53/152 (34.87%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 1    MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
            MDVKTAFLNG L++ IY+  P+G         VCKL K+IYGLK A++ W   F+  +K 
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   YGFEQNVAEPCVY---KRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDL 120
              F  +  + C+Y   K  I    ++++LYVD++++   D+  + + K++L  +F+M DL
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINEN-IYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDL 1120

Query: 121  GNAQYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
               ++ +GI+I    +   + +SQ++Y+ K+L
Sbjct: 1121 NEIKHFIGIRI--EMQEDKIYLSQSAYVKKIL 1147

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-19
Identity = 53/149 (35.57%), Postives = 84/149 (56.38%), Query Frame = 0


Query: 1    MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
            +DV  AFL G L   +Y+ QP GFI K +   VCKL+K++YGLK A + W +     + +
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
             GF  +V++  ++      ++V++++YVD+IL+ GND   L +    L+ +F +KD    
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  QYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
             Y LGI+    R    L +SQ  YI  +L
Sbjct: 1184 HYFLGIE--AKRVPTGLHLSQRRYILDLL 1210

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.2e-19
Identity = 48/144 (33.33%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 1    MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
            +DV  AFL G L   +Y+ QP GF+ K +   VC+L+K+IYGLK A + W +   T + +
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
             GF  ++++  ++      +++++++YVD+IL+ GND   L      L+ +F +K+  + 
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  QYVLGIQIVRNRKNKTLVMSQTSY 145
             Y LGI+    R  + L +SQ  Y
Sbjct: 1167 HYFLGIE--AKRVPQGLHLSQRRY 1188

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-17
Identity = 49/147 (33.33%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
           MDV TAFLN  +++ IY+ QP GF+ +     V +L   +YGLK A   WN   + T+K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
            GF ++  E  +Y R      +++ +YVD++L+          +K+ L   + MKDLG  
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 QYVLGIQIVRNRKNKTLVMSQTSYIDK 148
              LG+ I     N  + +S   YI K
Sbjct: 121 DKFLGLNI-HQSSNGDITLSLQDYIAK 146

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 130/149 (87.25%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
           MDVKTAFLNGNLE+SIY+VQPEGFIQKGQEQ+VCKLQKSIYGLK AS+ WNIRFDT IKS
Sbjct: 245 MDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKS 304

Query: 61  YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
           YGFEQNV EPCVYKRII STV FLVLYVD+ILLIGN+V +LTDIK+WL TQFQMKDLG+A
Sbjct: 305 YGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVDHLTDIKEWLDTQFQMKDLGSA 364

Query: 121 QYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
           QYVLGIQIV+NRKNKTL MSQTSYIDKML
Sbjct: 365 QYVLGIQIVQNRKNKTLAMSQTSYIDKML 393

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy TrEMBL
Match: A0A5A7V9B0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001330 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 126/148 (85.14%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
           MDVK AFLNGNLE+SIY+VQPEG IQKGQEQ+VCKLQKSIYGLK AS+ WNIRFD  IKS
Sbjct: 367 MDVKIAFLNGNLEESIYMVQPEGLIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDNAIKS 426

Query: 61  YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
           YGF+QNV EPCVYKRI  STV FLVLYVD ILLIGNDV  LTDIKKWLATQFQMKDLGNA
Sbjct: 427 YGFKQNVEEPCVYKRITNSTVAFLVLYVDEILLIGNDVDRLTDIKKWLATQFQMKDLGNA 486

Query: 121 QYVLGIQIVRNRKNKTLVMSQTSYIDKM 149
           QYVLGIQ VRNRKNKTL MSQTSYID +
Sbjct: 487 QYVLGIQTVRNRKNKTLTMSQTSYIDML 514

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64
Identity = 126/149 (84.56%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
           MDVKT FLN NLE+SIY+VQPE FIQKGQEQ++CKLQKSIYGLK AS+  NIRFDT IKS
Sbjct: 339 MDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKS 398

Query: 61  YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
           YG EQNV EPCVYKRI+ STV FLVLYVD+ILLIGNDVG+L DIKKWLA QFQMKDLGNA
Sbjct: 399 YGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNA 458

Query: 121 QYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
           QYVLG+QIVRNRKNKTL MSQTSYIDKML
Sbjct: 459 QYVLGVQIVRNRKNKTLAMSQTSYIDKML 487

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy TrEMBL
Match: A0A5D3CDT9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G001020 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.4e-64
Identity = 120/149 (80.54%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
           +DVKTAFLNGNLE+SIY+ QPEGFI+KGQEQ++CK QKSIYGLK AS+ WNIRFDT IKS
Sbjct: 22  IDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKSIYGLKQASRSWNIRFDTAIKS 81

Query: 61  YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
           YGFEQNV +PCVYK+++ S V FLVLYVD+ILL+GNDVG LTDIKKWLATQFQMKD G+A
Sbjct: 82  YGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVGYLTDIKKWLATQFQMKDFGDA 141

Query: 121 QYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
           QYVLGIQIVRNRKN+TL MS+ SYIDKML
Sbjct: 142 QYVLGIQIVRNRKNRTLAMSRASYIDKML 170

[Close]

BLAST of Cmc07g0191461.1 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 122/149 (81.88%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1    MDVKTAFLNGNLEKSIYLVQPEGFIQKGQEQRVCKLQKSIYGLKLASKFWNIRFDTTIKS 60
            MDVKTAFLNGNLE+SIY+VQPEGFI + QEQ+VCKLQKSIYGLK AS+ WNIRFDT IKS
Sbjct: 915  MDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKS 974

Query: 61   YGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNA 120
            YGFEQNV EPCVYK+I+ S V FL+LYVD+ILLIGNDV  LTD+KKWL TQFQMKDLG A
Sbjct: 975  YGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEA 1034

Query: 121  QYVLGIQIVRNRKNKTLVMSQTSYIDKML 150
            QY+LGIQIVRNRKNKTL MSQ SYIDK+L
Sbjct: 1035 QYILGIQIVRNRKNKTLAMSQASYIDKVL 1063

[Close]

BLAST of Cmc07g0191461.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 98.2 bits (243), Expect = 5.9e-21
Identity = 46/135 (34.07%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 1   MDVKTAFLNGNLEKSIYLVQPEGFIQKGQE----QRVCKLQKSIYGLKLASKFWNIRFDT 60
           +D+  AFLNG+L++ IY+  P G+  +  +      VC L+KSIYGLK AS+ W ++F  
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  TIKSYGFEQNVAEPCVYKRIIKSTVVFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKD 120
           T+  +GF Q+ ++   + +I  +  + +++YVD+I++  N+   + ++K  L + F+++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 LGNAQYVLGIQIVRN 132
           LG  +Y LG++I R+
Sbjct: 313 LGPLKYFLGLEIARS 327

[Close]

BLAST of Cmc07g0191461.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 9.1e-06
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 82  VFLVLYVDNILLIGNDVGNLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLVMSQ 141
           ++L+LYVD+ILL G+    L  +   L++ F MKDLG   Y LGIQI  +     L +SQ
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQ 60

Query: 142 TSYIDKML 150
           T Y +++L
Sbjct: 61  TKYAEQIL 66

The following BLAST results are available for this feature:

BLAST of Cmc07g0191461.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045356.1	1.1e-66	87.25	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0063026.1	2.4e-64	85.14	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	3.1e-64	84.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK09500.1	9.0e-64	80.54	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	2.6e-63	81.88	gag/pol protein, partial [Bryonia dioica]	[more]

BLAST of Cmc07g0191461.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-34	47.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.7e-20	34.87	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.1e-19	35.57	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	9.2e-19	33.33	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	5.0e-17	33.33	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc07g0191461.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA2	5.5e-67	87.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
A0A5A7V9B0	1.1e-64	85.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0013...	[more]
A0A5D3BX45	1.5e-64	84.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
A0A5D3CDT9	4.4e-64	80.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G0010...	[more]
E2GK51	1.3e-63	81.88	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]

BLAST of Cmc07g0191461.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.9e-21	34.07	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.1e-06	42.65	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..148 e-value: 2.7E-39 score: 135.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..149
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..128

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0191461	Cmc07g0191461	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0191461.1-exon	Cmc07g0191461.1-exon-CMiso1.1chr07:11227615..11228064	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0191461.1-cds	Cmc07g0191461.1-cds-CMiso1.1chr07:11227615..11228064	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0191461.1	Cmc07g0191461.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding