Cmc07g0191331.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0191331.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr07: 10873639 .. 10874574 (-)
Sequence length	936
RNA-Seq Expression	Cmc07g0191331.1
Synteny	Cmc07g0191331.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGAATTAAATCAATGTTCGTTGAACTTGATGAATCTGTTGGTGGCGATATCGTATTTGGTGATGCCACAAAGATTCCAGTTAAAGGAAAAAGTAAAATTTTGATCAATTTGAAGAATGGGAAGCATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTTAGTTTGGGGCAACTCTTAGAGAAAGACTATAATATTTTGATGAAGGATTATAATCTTTTGATAAGAGATAATCATGACAAAATTGTTGCTAAAGTACAAATGACGAAAAATAGAATGTTTTTATTAAACATTCAAATTGATGTTGCTAAATGTTTAAAGTCATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTTGGGCATTTGAACTTTGATGGCTTAAGATTATTAGCCAGAAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAGATCAACTTTGTGAAGGTTGTCTTCATGACAAACAATCAAGGAAGAATTTTCCACAAGAATCATCTTCGAGAGCAAGGAGATCACTGGAGTTAGTTCACACGGATCTTTATGGACCGATCAAACCAAGTTCTTTTGGTCAGAATAATTATTTCTTATTCTTTATTGATGATTTCAGCCGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAAAAGTATTTGGCATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAAAAAGTGGTTATTACATTAAAGCTTTGAGATTAGACAGGGGAGGTGAATTCACTTCAAATGAATTCAAAAATATTTGCGCAGAAAATGGAATCCGTCGACCTATGACAGTTCCATTTACTCCTCAACAAAATGATGTTGTTGAAAGGAAGAACCGAACAATACTTAACATGGCTCGAAGCATGTTGAAGTGCAAGAAGATGCCAAAAGAATTTTAG

mRNA sequence

ATGTGTGGAATTAAATCAATGTTCGTTGAACTTGATGAATCTGTTGGTGGCGATATCGTATTTGGTGATGCCACAAAGATTCCAGTTAAAGGAAAAAGTAAAATTTTGATCAATTTGAAGAATGGGAAGCATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTTAGTTTGGGGCAACTCTTAGAGAAAGACTATAATATTTTGATGAAGGATTATAATCTTTTGATAAGAGATAATCATGACAAAATTGTTGCTAAAGTACAAATGACGAAAAATAGAATGTTTTTATTAAACATTCAAATTGATGTTGCTAAATGTTTAAAGTCATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTTGGGCATTTGAACTTTGATGGCTTAAGATTATTAGCCAGAAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAGATCAACTTTGTGAAGGTTGTCTTCATGACAAACAATCAAGGAAGAATTTTCCACAAGAATCATCTTCGAGAGCAAGGAGATCACTGGAGTTAGTTCACACGGATCTTTATGGACCGATCAAACCAAGTTCTTTTGGTCAGAATAATTATTTCTTATTCTTTATTGATGATTTCAGCCGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAAAAGTATTTGGCATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAAAAAGTGGTTATTACATTAAAGCTTTGAGATTAGACAGGGGAGGTGAATTCACTTCAAATGAATTCAAAAATATTTGCGCAGAAAATGGAATCCGTCGACCTATGACAGTTCCATTTACTCCTCAACAAAATGATGTTGTTGAAAGGAAGAACCGAACAATACTTAACATGGCTCGAAGCATGTTGAAGTGCAAGAAGATGCCAAAAGAATTTTAG

Coding sequence (CDS)

ATGTGTGGAATTAAATCAATGTTCGTTGAACTTGATGAATCTGTTGGTGGCGATATCGTATTTGGTGATGCCACAAAGATTCCAGTTAAAGGAAAAAGTAAAATTTTGATCAATTTGAAGAATGGGAAGCATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTTAGTTTGGGGCAACTCTTAGAGAAAGACTATAATATTTTGATGAAGGATTATAATCTTTTGATAAGAGATAATCATGACAAAATTGTTGCTAAAGTACAAATGACGAAAAATAGAATGTTTTTATTAAACATTCAAATTGATGTTGCTAAATGTTTAAAGTCATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTTGGGCATTTGAACTTTGATGGCTTAAGATTATTAGCCAGAAAGAACATGGTGAAAGGGTTGCCATATGTCAAACATCCAGATCAACTTTGTGAAGGTTGTCTTCATGACAAACAATCAAGGAAGAATTTTCCACAAGAATCATCTTCGAGAGCAAGGAGATCACTGGAGTTAGTTCACACGGATCTTTATGGACCGATCAAACCAAGTTCTTTTGGTCAGAATAATTATTTCTTATTCTTTATTGATGATTTCAGCCGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAAAAGTATTTGGCATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAAAAAGTGGTTATTACATTAAAGCTTTGAGATTAGACAGGGGAGGTGAATTCACTTCAAATGAATTCAAAAATATTTGCGCAGAAAATGGAATCCGTCGACCTATGACAGTTCCATTTACTCCTCAACAAAATGATGTTGTTGAAAGGAAGAACCGAACAATACTTAACATGGCTCGAAGCATGTTGAAGTGCAAGAAGATGCCAAAAGAATTTTAG

Protein sequence

MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNIFSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDPNWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRARRSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEKKSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARSMLKCKKMPKEF

Homology

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BLAST of Cmc07g0191331.1 vs. NCBI nr
Match: TYK29027.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 587.0 bits (1512), Expect = 9.3e-164
Identity = 287/311 (92.28%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMFVELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 232 MCGSKSMFVELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 291

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 292 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 351

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 352 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 411

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 412 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 471

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 472 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 531

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 532 MLKCKKMPKEF 542

[Close]

BLAST of Cmc07g0191331.1 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 586.6 bits (1511), Expect = 1.2e-163
Identity = 286/311 (91.96%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMF+ELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc07g0191331.1 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 586.6 bits (1511), Expect = 1.2e-163
Identity = 286/311 (91.96%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMF+ELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc07g0191331.1 vs. NCBI nr
Match: TYJ96309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 586.6 bits (1511), Expect = 1.2e-163
Identity = 286/311 (91.96%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMF+ELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc07g0191331.1 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 586.6 bits (1511), Expect = 1.2e-163
Identity = 286/311 (91.96%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMF+ELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-45
Identity = 113/310 (36.45%), Postives = 173/310 (55.81%), Query Frame = 0


Query: 4   IKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNIFSL 63
           ++ +F        G +  G+ +   + G   I I    G    + +V +VP+++ N+ S 
Sbjct: 307 VRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLIS- 366

Query: 64  GQLLEKD-YNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDPNW 123
           G  L++D Y       N   R     +V    + +  ++  N +I   +   +  +    
Sbjct: 367 GIALDRDGYESYFA--NQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVD 426

Query: 124 IWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPD-QLCEGCLHDKQSRKNFPQESSSRARR 183
           +WH R GH++  GL++LA+K+++    Y K    + C+ CL  KQ R +F Q SS R   
Sbjct: 427 LWHKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCLFGKQHRVSF-QTSSERKLN 486

Query: 184 SLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEKK 243
            L+LV++D+ GP++  S G N YF+ FIDD SRK WVY +K K +VF +F++F ALVE++
Sbjct: 487 ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERE 546

Query: 244 SGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARSM 303
           +G  +K LR D GGE+TS EF+  C+ +GIR   TVP TPQ N V ER NRTI+   RSM
Sbjct: 547 TGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSM 606

Query: 304 LKCKKMPKEF 312
           L+  K+PK F
Sbjct: 607 LRMAKLPKSF 609

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-33
Identity = 92/280 (32.86%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 36  LINLKNGKHEFISNVYYVPNMKNNIFSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQM 95
           ++ L+N     + +V +      N+ S+ +L E   +I      + I  N   +V    M
Sbjct: 334 IVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGM 393

Query: 96  TKNRMFLLNIQIDVAKCLKSCLKDPNWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPD 155
             N + ++N Q   A  + +  K+   +WH RFGH++   L  + RKNM      + + +
Sbjct: 394 L-NNVPVINFQ---AYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE 453

Query: 156 ---QLCEGCLHDKQSRKNFPQ-ESSSRARRSLELVHTDLYGPIKPSSFGQNNYFLFFIDD 215
              ++CE CL+ KQ+R  F Q +  +  +R L +VH+D+ GPI P +    NYF+ F+D 
Sbjct: 454 LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQ 513

Query: 216 FSRKTWVYFVKEKSKVFGMFKRFKALVEKKSGYYIKALRLDRGGEFTSNEFKNICAENGI 275
           F+     Y +K KS VF MF+ F A  E      +  L +D G E+ SNE +  C + GI
Sbjct: 514 FTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGI 573

Query: 276 RRPMTVPFTPQQNDVVERKNRTILNMARSMLKCKKMPKEF 312
              +TVP TPQ N V ER  RTI   AR+M+   K+ K F
Sbjct: 574 SYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSF 609

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.4e-21
Identity = 81/302 (26.82%), Postives = 144/302 (47.68%), Query Frame = 0


Query: 16  GGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNIFSLGQLLEKD-YNIL 75
           G D++  D + IP+       +   +   + ++ V YVPN+  N+ S+ +L   +  ++ 
Sbjct: 336 GDDVMIADGSTIPITHTGSASLPTSSRSLD-LNKVLYVPNIHKNLISVYRLCNTNRVSVE 395

Query: 76  MKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQID--VAKCLKSCLKDPNWIWHLRFGHLN 135
               +  ++D +  +      TK+ ++   I     V+     C K  +  WH R GH  
Sbjct: 396 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGH-- 455

Query: 136 FDGLRLLARKNMVKGLPYVKHPDQL--CEGCLHDKQSRKNFPQESSSRARRSLELVHTDL 195
              L +L        LP +    +L  C  C  +K  +  F   S+  + + LE +++D+
Sbjct: 456 -PSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPF-SNSTITSSKPLEYIYSDV 515

Query: 196 Y-GPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEKKSGYYIKAL 255
           +  PI   S     Y++ F+D F+R TW+Y +K+KS+V   F  FK+LVE +    I  L
Sbjct: 516 WSSPI--LSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTL 575

Query: 256 RLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARSMLKCKKMPK 312
             D GGEF     ++  +++GI    + P TP+ N + ERK+R I+ M  ++L    +PK
Sbjct: 576 YSDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPK 628

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.9e-19
Identity = 79/300 (26.33%), Postives = 141/300 (47.00%), Query Frame = 0


Query: 16  GGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNIFSLGQLLEKD-YNIL 75
           G D++  D + IP+       ++ K+ +   + N+ YVPN+  N+ S+ +L   +  ++ 
Sbjct: 357 GDDVMVADGSTIPISHTGSTSLSTKS-RPLNLHNILYVPNIHKNLISVYRLCNANGVSVE 416

Query: 76  MKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQID--VAKCLKSCLKDPNWIWHLRFGHLN 135
               +  ++D +  +      TK+ ++   I     V+       K  +  WH R GH  
Sbjct: 417 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 476

Query: 136 FDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRARRSLELVHTDLY- 195
              L  +   N    +    H    C  CL +K ++  F Q S+  + R LE +++D++ 
Sbjct: 477 PSILNSVI-SNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQ-STINSTRPLEYIYSDVWS 536

Query: 196 GPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEKKSGYYIKALRL 255
            PI   S     Y++ F+D F+R TW+Y +K+KS+V   F  FK L+E +    I     
Sbjct: 537 SPI--LSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYS 596

Query: 256 DRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARSMLKCKKMPKEF 312
           D GGEF +       +++GI    + P TP+ N + ERK+R I+    ++L    +PK +
Sbjct: 597 DNGGEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTY 649

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.3e-18
Identity = 76/313 (24.28%), Postives = 134/313 (42.81%), Query Frame = 0


Query: 18  DIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNIFSLGQLLEKDYNILMKD 77
           +IV      IP+     +  N +NG    I    + PN+  ++ SL +L  ++       
Sbjct: 481 NIVDAQKQDIPINAIGNLHFNFQNGTKTSI-KALHTPNIAYDLLSLSELANQNITACF-T 540

Query: 78  YNLLIRDNHDKIVAKVQ------MTKNRMF---LLNIQIDVAKCLKSCLKDPNWIWHLRF 137
            N L R +   +   V+      ++K  +    +  + I+     KS  K P  + H   
Sbjct: 541 RNTLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTINNVNKSKSVNKYPYPLIHRML 600

Query: 138 GHLNFDGLRLLARKNMVKGLPYVKHPD--------QLCEGCLHDKQSRKNFPQESSSRAR 197
           GH NF  ++   +KN V    Y+K  D          C  CL  K ++    + S  + +
Sbjct: 601 GHANFRSIQKSLKKNAV---TYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQ 660

Query: 198 RSLE---LVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFV--KEKSKVFGMFKRFK 257
            S E    +HTD++GP+        +YF+ F D+ +R  WVY +  + +  +  +F    
Sbjct: 661 ESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSIL 720

Query: 258 ALVEKKSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTIL 309
           A ++ +    +  +++DRG E+T+          GI    T     + + V ER NRT+L
Sbjct: 721 AFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLL 780

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy TrEMBL
Match: A0A5D3DYS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001400 PE=4 SV=1)

HSP 1 Score: 587.0 bits (1512), Expect = 4.5e-164
Identity = 287/311 (92.28%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMFVELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 232 MCGSKSMFVELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 291

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 292 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 351

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 352 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 411

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 412 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 471

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 472 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 531

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 532 MLKCKKMPKEF 542

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 5.9e-164
Identity = 286/311 (91.96%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMF+ELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 5.9e-164
Identity = 286/311 (91.96%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMF+ELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy TrEMBL
Match: A0A5A7V308 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00290 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 5.9e-164
Identity = 286/311 (91.96%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMF+ELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 632 MLKCKKMPKEF 642

[Close]

BLAST of Cmc07g0191331.1 vs. ExPASy TrEMBL
Match: A0A5A7UNW6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G00840 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 5.9e-164
Identity = 286/311 (91.96%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 1   MCGIKSMFVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNI 60
           MCG KSMF+ELDESVGGDIVFGDATKIPVKGK KILINLKNGKHEFISNVYYVPNMKNNI
Sbjct: 232 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKDKILINLKNGKHEFISNVYYVPNMKNNI 291

Query: 61  FSLGQLLEKDYNILMKDYNLLIRDNHDKIVAKVQMTKNRMFLLNIQIDVAKCLKSCLKDP 120
            SLGQLLEK YNILMKDY+LLIRDNHDKI+AKVQMTKNRMFLLNIQ DVA+CLKSCLKDP
Sbjct: 292 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 351

Query: 121 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFPQESSSRAR 180
           NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVK PDQLCEGCLH KQSRK+FPQESS RAR
Sbjct: 352 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 411

Query: 181 RSLELVHTDLYGPIKPSSFGQNNYFLFFIDDFSRKTWVYFVKEKSKVFGMFKRFKALVEK 240
           R LELVHTDL GPIKPSSFG+NNYFL FIDDFSRKTWVYFVKEKS+VFGMFKRFKALVEK
Sbjct: 412 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 471

Query: 241 KSGYYIKALRLDRGGEFTSNEFKNICAENGIRRPMTVPFTPQQNDVVERKNRTILNMARS 300
           +SGYYIKALR DRGGEFTSNEFK  C ENGIRR MTVPFTPQQN VVERKNRTILNMARS
Sbjct: 472 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 531

Query: 301 MLKCKKMPKEF 312
           MLKCKKMPKEF
Sbjct: 532 MLKCKKMPKEF 542

[Close]

BLAST of Cmc07g0191331.1 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.9e-06
Identity = 28/88 (31.82%), Postives = 41/88 (46.59%), Query Frame = 0


Query: 113 LKSCLKDPNWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKHPDQLCEGCLHDKQSRKNFP 172
           L    KD   +WH R  H++  G+ LL +K  +          + CE C++ K  R NF 
Sbjct: 61  LAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSL--KFCEDCIYGKTHRVNF- 120

Query: 173 QESSSRARRSLELVHTDLYG-PIKPSSF 200
                  +  L+ VH+DL+G P  P SF
Sbjct: 121 STGQHTTKNPLDYVHSDLWGAPSVPLSF 145

[Close]

BLAST of Cmc07g0191331.1 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.9 bits (115), Expect = 8.5e-06
Identity = 23/66 (34.85%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 8   FVELDESVGGDIVFGDATKIPVKGKSKILINLKNGKHEFISNVYYVPNMKNNIFSLGQLL 67
           F  LD +    +   D T + V+GK  + I +K GK + I NV +VP +  N+ S G+++
Sbjct: 297 FTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGKMV 356

Query: 68  EKDYNI 74
            K Y+I
Sbjct: 357 SKRYSI 362

The following BLAST results are available for this feature:

BLAST of Cmc07g0191331.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29027.1	9.3e-164	92.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK18362.1	1.2e-163	91.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	1.2e-163	91.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ96309.1	1.2e-163	91.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	1.2e-163	91.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc07g0191331.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-45	36.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.6e-33	32.86	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.4e-21	26.82	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.9e-19	26.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	7.3e-18	24.28	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc07g0191331.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYS0	4.5e-164	92.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	5.9e-164	91.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	5.9e-164	91.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V308	5.9e-164	91.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UNW6	5.9e-164	91.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc07g0191331.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	2.9e-06	31.82	Gag-Pol-related retrotransposon family protein	[more]
AT3G21000.1	8.5e-06	34.85	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 181..281 e-value: 9.8E-13 score: 48.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 168..311 score: 19.913883
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 173..310 e-value: 3.2E-32 score: 113.4
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 114..166 e-value: 7.5E-12 score: 44.9
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..168
None	No IPR available	PANTHER	PTHR34676:SF9	SUBFAMILY NOT NAMED	coord: 1..168
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 178..308

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0191331	Cmc07g0191331	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0191331.1-exon	Cmc07g0191331.1-exon-CMiso1.1chr07:10873639..10874574	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0191331.1-cds	Cmc07g0191331.1-cds-CMiso1.1chr07:10873639..10874574	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0191331.1	Cmc07g0191331.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding