Cmc07g0190801.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0190801.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr07: 10044054 .. 10044803 (+)
Sequence length	750
RNA-Seq Expression	Cmc07g0190801.1
Synteny	Cmc07g0190801.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAAGAAATGGCTCGAGTTATGATACATCCCAAAAATTTACCTCTGCATTTTTGGGCAGAAGCTGTTAACACAACGTGTCACATTCACAACAGGATTACTACTCGATCTGGAACGACTGTCACGTTATATGAACTTTGGAATGGAAGAAAGTTGAACGTAAAGTATTTTCATGTTTTTGGAAATACTTGTTATATTCTAGCTAATAGAGAATATCATCGAAAGTGGGATGTGAAATTAGAACAAGGAATCTTTCTTGAATATTCTCATAATAGTCGTGCTTATAGAGTCTTTAATATTAAATCTGGTATAGTTATGGAAACGATCAATGTTGTGGTAAATGATTTTGAATCAACTGACAATCAAATTAATGATGAGGATGATGAGACTGTAAATATACCTGTGGATAATTCACTGTGTTCTGTGGAGGTACCTAAAGCTGATGCTTTAATAGATGGTTCTGGTATAAACTCAGAAAAGATATCTAAGGAAGTTATAGCTGATAATCTTGAGTTTGTTCCTTTTGCACATGTGAAGAAGAATCATCCATCAAGTTCTATAATAGGTGATCCTCCAGCTGGAATTATCACTCAAAAGAAAGAGAAAGTAGATTACTTGAAGATGATTGCTGACTTATGTTATACATTTGCCATCAAACCCTCAACTATTGACGTTGCTCTTAAAGATGAATATTGGATTAACGTAATGCAAGAAGAACTACTCCAATTCATGAGAAACAATGTCTAG

mRNA sequence

ATGCTTCAAGAAATGGCTCGAGTTATGATACATCCCAAAAATTTACCTCTGCATTTTTGGGCAGAAGCTGTTAACACAACGTGTCACATTCACAACAGGATTACTACTCGATCTGGAACGACTGTCACGTTATATGAACTTTGGAATGGAAGAAAGTTGAACGTAAAGTATTTTCATGTTTTTGGAAATACTTGTTATATTCTAGCTAATAGAGAATATCATCGAAAGTGGGATGTGAAATTAGAACAAGGAATCTTTCTTGAATATTCTCATAATAGTCGTGCTTATAGAGTCTTTAATATTAAATCTGGTATAGTTATGGAAACGATCAATGTTGTGGTAAATGATTTTGAATCAACTGACAATCAAATTAATGATGAGGATGATGAGACTGTAAATATACCTGTGGATAATTCACTGTGTTCTGTGGAGGTACCTAAAGCTGATGCTTTAATAGATGGTTCTGGTATAAACTCAGAAAAGATATCTAAGGAAGTTATAGCTGATAATCTTGAGTTTGTTCCTTTTGCACATGTGAAGAAGAATCATCCATCAAGTTCTATAATAGGTGATCCTCCAGCTGGAATTATCACTCAAAAGAAAGAGAAAGTAGATTACTTGAAGATGATTGCTGACTTATGTTATACATTTGCCATCAAACCCTCAACTATTGACGTTGCTCTTAAAGATGAATATTGGATTAACGTAATGCAAGAAGAACTACTCCAATTCATGAGAAACAATGTCTAG

Coding sequence (CDS)

ATGCTTCAAGAAATGGCTCGAGTTATGATACATCCCAAAAATTTACCTCTGCATTTTTGGGCAGAAGCTGTTAACACAACGTGTCACATTCACAACAGGATTACTACTCGATCTGGAACGACTGTCACGTTATATGAACTTTGGAATGGAAGAAAGTTGAACGTAAAGTATTTTCATGTTTTTGGAAATACTTGTTATATTCTAGCTAATAGAGAATATCATCGAAAGTGGGATGTGAAATTAGAACAAGGAATCTTTCTTGAATATTCTCATAATAGTCGTGCTTATAGAGTCTTTAATATTAAATCTGGTATAGTTATGGAAACGATCAATGTTGTGGTAAATGATTTTGAATCAACTGACAATCAAATTAATGATGAGGATGATGAGACTGTAAATATACCTGTGGATAATTCACTGTGTTCTGTGGAGGTACCTAAAGCTGATGCTTTAATAGATGGTTCTGGTATAAACTCAGAAAAGATATCTAAGGAAGTTATAGCTGATAATCTTGAGTTTGTTCCTTTTGCACATGTGAAGAAGAATCATCCATCAAGTTCTATAATAGGTGATCCTCCAGCTGGAATTATCACTCAAAAGAAAGAGAAAGTAGATTACTTGAAGATGATTGCTGACTTATGTTATACATTTGCCATCAAACCCTCAACTATTGACGTTGCTCTTAAAGATGAATATTGGATTAACGTAATGCAAGAAGAACTACTCCAATTCATGAGAAACAATGTCTAG

Protein sequence

MLQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV

Homology

[Close]

BLAST of Cmc07g0190801.1 vs. NCBI nr
Match: KAA0064117.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK28621.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 482.3 bits (1240), Expect = 2.6e-132
Identity = 239/248 (96.37%), Postives = 241/248 (97.18%), Query Frame = 0


Query: 2   LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVF 61
           LQEMARVMIHPKNLPLHF AEA+NT CHIHNRITTRSG TVTLYELWNGRKLNVKYFHVF
Sbjct: 222 LQEMARVMIHPKNLPLHFLAEAINTACHIHNRITTRSGMTVTLYELWNGRKLNVKYFHVF 281

Query: 62  GNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFESTD 121
           GNTCYILA+REYHRKWDVKLEQGIFLEYSHNS AYRVFNIKSGIVMETINVVVNDFESTD
Sbjct: 282 GNTCYILADREYHRKWDVKLEQGIFLEYSHNSCAYRVFNIKSGIVMETINVVVNDFESTD 341

Query: 122 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKK 181
           NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVP  HVKK
Sbjct: 342 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPSTHVKK 401

Query: 182 NHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 241
           NHPSSSIIGDPPA IITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL
Sbjct: 402 NHPSSSIIGDPPAKIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 461

Query: 242 LQFMRNNV 250
           LQFMRNNV
Sbjct: 462 LQFMRNNV 469

[Close]

BLAST of Cmc07g0190801.1 vs. NCBI nr
Match: TYK11800.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 372.9 bits (956), Expect = 2.2e-99
Identity = 190/248 (76.61%), Postives = 206/248 (83.06%), Query Frame = 0


Query: 2   LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVF 61
           LQEMARVMIH K+LPL+FWAEAVNT CHIH+RITTRSGT VTLYELWNGRKLNVKYFHVF
Sbjct: 13  LQEMARVMIHAKHLPLNFWAEAVNTVCHIHDRITTRSGTGVTLYELWNGRKLNVKYFHVF 72

Query: 62  GNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFESTD 121
           G+TCYILANREYHRKWDVK +QGIFL YS NSRAYRVFN  SG VMETIN +VNDFES  
Sbjct: 73  GSTCYILANREYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISGTVMETINGLVNDFESAA 132

Query: 122 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKK 181
            Q  DEDDET+NI +D+   S +V KAD   DG+ INS   SKEVIADN E V  AH++K
Sbjct: 133 TQTYDEDDETLNIRLDS---STKVLKADPQADGTSINSNTTSKEVIADNSELVSSAHMRK 192

Query: 182 NHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 241
           NHP SSIIGDP A I T+KKEKVDY KMIADLCYT  I+PST+ VALKDEYWIN MQEEL
Sbjct: 193 NHPPSSIIGDPSAAITTRKKEKVDYSKMIADLCYTSTIEPSTVIVALKDEYWINAMQEEL 252

Query: 242 LQFMRNNV 250
           LQF RNNV
Sbjct: 253 LQFRRNNV 257

[Close]

BLAST of Cmc07g0190801.1 vs. NCBI nr
Match: KAA0039208.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK18475.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-93
Identity = 180/249 (72.29%), Postives = 193/249 (77.51%), Query Frame = 0


Query: 1   MLQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHV 60
           MLQEMARVMIH KNL LHFWA+A+NT CHIHNRI TRSGTT  LYELW GRK NVKYFHV
Sbjct: 1   MLQEMARVMIHAKNLALHFWAKAINTACHIHNRIATRSGTTFALYELWKGRKPNVKYFHV 60

Query: 61  FGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFEST 120
           F +TCYILA+REYHRKWDVK +QGIFL  SHNSRAYR+FNIKSG VME INVVVNDFEST
Sbjct: 61  FASTCYILADREYHRKWDVKSKQGIFLGCSHNSRAYRIFNIKSGTVMEMINVVVNDFEST 120

Query: 121 DNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVK 180
           DNQINDEDDETVNIPVDNSLC VEVPKADALIDG+                         
Sbjct: 121 DNQINDEDDETVNIPVDNSLCPVEVPKADALIDGA------------------------- 180

Query: 181 KNHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEE 240
                    GDP AGIITQKKE+VDYLKMIA+LCYT  I+PST+D+A KDE WIN MQEE
Sbjct: 181 ---------GDPSAGIITQKKEEVDYLKMIANLCYTSTIEPSTVDIAFKDENWINAMQEE 215

Query: 241 LLQFMRNNV 250
           LL+F RNNV
Sbjct: 241 LLRFRRNNV 215

[Close]

BLAST of Cmc07g0190801.1 vs. NCBI nr
Match: KAA0060126.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 331.3 bits (848), Expect = 7.4e-87
Identity = 167/241 (69.29%), Postives = 193/241 (80.08%), Query Frame = 0


Query: 2   LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVF 61
           LQEMARVMIH KNLPL+FWAEAVNT CHIH+R+TTRSGTTVTLYELW GRK N+KYFH+F
Sbjct: 597 LQEMARVMIHAKNLPLNFWAEAVNTACHIHDRVTTRSGTTVTLYELWKGRKPNIKYFHIF 656

Query: 62  GNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFESTD 121
           G+ CYILA+R+YHRKWDVK +Q IFL YS NSRAYRVFNIKSG VMETINVVVNDFES  
Sbjct: 657 GSICYILADRKYHRKWDVKSDQEIFLGYSQNSRAYRVFNIKSGTVMETINVVVNDFESNI 716

Query: 122 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKK 181
           NQ N E+DET   P   S    E+ K ++ +D +   S  I+ EVI +    VP AHVKK
Sbjct: 717 NQFNIENDETHVTPEVTSTPLDEMSKGESQLDSAKTYS-SITDEVINNETVLVPSAHVKK 776

Query: 182 NHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 241
           NHP SS+IGDP AGI T++KEKVDY KMIADLCY  AI+P++++ ALKDEYWIN MQ+EL
Sbjct: 777 NHPLSSLIGDPSAGITTRRKEKVDYTKMIADLCYVSAIEPTSVENALKDEYWINAMQKEL 836

Query: 242 L 243
           L
Sbjct: 837 L 836

[Close]

BLAST of Cmc07g0190801.1 vs. NCBI nr
Match: KAA0042995.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 330.9 bits (847), Expect = 9.7e-87
Identity = 161/248 (64.92%), Postives = 196/248 (79.03%), Query Frame = 0


Query: 2   LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVF 61
           LQEMARVMIH KNLPL F+AEAVNT CHIHNR+T R+GTT+TLYE W  RKLNVKYFHVF
Sbjct: 726 LQEMARVMIHAKNLPLCFFAEAVNTACHIHNRVTIRTGTTITLYEHWKERKLNVKYFHVF 785

Query: 62  GNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFESTD 121
           G+TCYILA+REYH+KWD + EQGIFL YS  SRAYRV+N +S  VMETIN  +ND +S  
Sbjct: 786 GSTCYILADREYHKKWDARSEQGIFLRYSQISRAYRVYNNRSDSVMETINEFINDLDSAI 845

Query: 122 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKK 181
             +NDE+DET N+    +  +VE  KAD   DG G + +K S+E+I   LE +P AHV+K
Sbjct: 846 KLMNDEEDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIINKKLELIPSAHVEK 905

Query: 182 NHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 241
           NHP+ SIIGDP AG+ T++K+K+DYLKM+A+LCY   I+PST+D ALK+EYW+N MQEEL
Sbjct: 906 NHPARSIIGDPSAGMQTRRKDKIDYLKMVANLCYISTIEPSTVDSALKNEYWLNAMQEEL 965

Query: 242 LQFMRNNV 250
           LQF RNNV
Sbjct: 966 LQFKRNNV 973

[Close]

BLAST of Cmc07g0190801.1 vs. ExPASy TrEMBL
Match: A0A5A7VAS8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00390 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132
Identity = 239/248 (96.37%), Postives = 241/248 (97.18%), Query Frame = 0


Query: 2   LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVF 61
           LQEMARVMIHPKNLPLHF AEA+NT CHIHNRITTRSG TVTLYELWNGRKLNVKYFHVF
Sbjct: 222 LQEMARVMIHPKNLPLHFLAEAINTACHIHNRITTRSGMTVTLYELWNGRKLNVKYFHVF 281

Query: 62  GNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFESTD 121
           GNTCYILA+REYHRKWDVKLEQGIFLEYSHNS AYRVFNIKSGIVMETINVVVNDFESTD
Sbjct: 282 GNTCYILADREYHRKWDVKLEQGIFLEYSHNSCAYRVFNIKSGIVMETINVVVNDFESTD 341

Query: 122 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKK 181
           NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVP  HVKK
Sbjct: 342 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPSTHVKK 401

Query: 182 NHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 241
           NHPSSSIIGDPPA IITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL
Sbjct: 402 NHPSSSIIGDPPAKIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 461

Query: 242 LQFMRNNV 250
           LQFMRNNV
Sbjct: 462 LQFMRNNV 469

[Close]

BLAST of Cmc07g0190801.1 vs. ExPASy TrEMBL
Match: A0A5D3CK56 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00110 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 1.1e-99
Identity = 190/248 (76.61%), Postives = 206/248 (83.06%), Query Frame = 0


Query: 2   LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVF 61
           LQEMARVMIH K+LPL+FWAEAVNT CHIH+RITTRSGT VTLYELWNGRKLNVKYFHVF
Sbjct: 13  LQEMARVMIHAKHLPLNFWAEAVNTVCHIHDRITTRSGTGVTLYELWNGRKLNVKYFHVF 72

Query: 62  GNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFESTD 121
           G+TCYILANREYHRKWDVK +QGIFL YS NSRAYRVFN  SG VMETIN +VNDFES  
Sbjct: 73  GSTCYILANREYHRKWDVKSKQGIFLGYSQNSRAYRVFNSISGTVMETINGLVNDFESAA 132

Query: 122 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKK 181
            Q  DEDDET+NI +D+   S +V KAD   DG+ INS   SKEVIADN E V  AH++K
Sbjct: 133 TQTYDEDDETLNIRLDS---STKVLKADPQADGTSINSNTTSKEVIADNSELVSSAHMRK 192

Query: 182 NHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 241
           NHP SSIIGDP A I T+KKEKVDY KMIADLCYT  I+PST+ VALKDEYWIN MQEEL
Sbjct: 193 NHPPSSIIGDPSAAITTRKKEKVDYSKMIADLCYTSTIEPSTVIVALKDEYWINAMQEEL 252

Query: 242 LQFMRNNV 250
           LQF RNNV
Sbjct: 253 LQFRRNNV 257

[Close]

BLAST of Cmc07g0190801.1 vs. ExPASy TrEMBL
Match: A0A5D3D4K0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00460 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 5.2e-94
Identity = 180/249 (72.29%), Postives = 193/249 (77.51%), Query Frame = 0


Query: 1   MLQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHV 60
           MLQEMARVMIH KNL LHFWA+A+NT CHIHNRI TRSGTT  LYELW GRK NVKYFHV
Sbjct: 1   MLQEMARVMIHAKNLALHFWAKAINTACHIHNRIATRSGTTFALYELWKGRKPNVKYFHV 60

Query: 61  FGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFEST 120
           F +TCYILA+REYHRKWDVK +QGIFL  SHNSRAYR+FNIKSG VME INVVVNDFEST
Sbjct: 61  FASTCYILADREYHRKWDVKSKQGIFLGCSHNSRAYRIFNIKSGTVMEMINVVVNDFEST 120

Query: 121 DNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVK 180
           DNQINDEDDETVNIPVDNSLC VEVPKADALIDG+                         
Sbjct: 121 DNQINDEDDETVNIPVDNSLCPVEVPKADALIDGA------------------------- 180

Query: 181 KNHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEE 240
                    GDP AGIITQKKE+VDYLKMIA+LCYT  I+PST+D+A KDE WIN MQEE
Sbjct: 181 ---------GDPSAGIITQKKEEVDYLKMIANLCYTSTIEPSTVDIAFKDENWINAMQEE 215

Query: 241 LLQFMRNNV 250
           LL+F RNNV
Sbjct: 241 LLRFRRNNV 215

[Close]

BLAST of Cmc07g0190801.1 vs. ExPASy TrEMBL
Match: A0A5A7V0X1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G00460 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.6e-87
Identity = 167/241 (69.29%), Postives = 193/241 (80.08%), Query Frame = 0


Query: 2   LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVF 61
           LQEMARVMIH KNLPL+FWAEAVNT CHIH+R+TTRSGTTVTLYELW GRK N+KYFH+F
Sbjct: 597 LQEMARVMIHAKNLPLNFWAEAVNTACHIHDRVTTRSGTTVTLYELWKGRKPNIKYFHIF 656

Query: 62  GNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFESTD 121
           G+ CYILA+R+YHRKWDVK +Q IFL YS NSRAYRVFNIKSG VMETINVVVNDFES  
Sbjct: 657 GSICYILADRKYHRKWDVKSDQEIFLGYSQNSRAYRVFNIKSGTVMETINVVVNDFESNI 716

Query: 122 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKK 181
           NQ N E+DET   P   S    E+ K ++ +D +   S  I+ EVI +    VP AHVKK
Sbjct: 717 NQFNIENDETHVTPEVTSTPLDEMSKGESQLDSAKTYS-SITDEVINNETVLVPSAHVKK 776

Query: 182 NHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 241
           NHP SS+IGDP AGI T++KEKVDY KMIADLCY  AI+P++++ ALKDEYWIN MQ+EL
Sbjct: 777 NHPLSSLIGDPSAGITTRRKEKVDYTKMIADLCYVSAIEPTSVENALKDEYWINAMQKEL 836

Query: 242 L 243
           L
Sbjct: 837 L 836

[Close]

BLAST of Cmc07g0190801.1 vs. ExPASy TrEMBL
Match: A0A5A7TNK7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00690 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.7e-87
Identity = 161/248 (64.92%), Postives = 196/248 (79.03%), Query Frame = 0


Query: 2   LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVF 61
           LQEMARVMIH KNLPL F+AEAVNT CHIHNR+T R+GTT+TLYE W  RKLNVKYFHVF
Sbjct: 726 LQEMARVMIHAKNLPLCFFAEAVNTACHIHNRVTIRTGTTITLYEHWKERKLNVKYFHVF 785

Query: 62  GNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGIVMETINVVVNDFESTD 121
           G+TCYILA+REYH+KWD + EQGIFL YS  SRAYRV+N +S  VMETIN  +ND +S  
Sbjct: 786 GSTCYILADREYHKKWDARSEQGIFLRYSQISRAYRVYNNRSDSVMETINEFINDLDSAI 845

Query: 122 NQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKK 181
             +NDE+DET N+    +  +VE  KAD   DG G + +K S+E+I   LE +P AHV+K
Sbjct: 846 KLMNDEEDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIINKKLELIPSAHVEK 905

Query: 182 NHPSSSIIGDPPAGIITQKKEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEEL 241
           NHP+ SIIGDP AG+ T++K+K+DYLKM+A+LCY   I+PST+D ALK+EYW+N MQEEL
Sbjct: 906 NHPARSIIGDPSAGMQTRRKDKIDYLKMVANLCYISTIEPSTVDSALKNEYWLNAMQEEL 965

Query: 242 LQFMRNNV 250
           LQF RNNV
Sbjct: 966 LQFKRNNV 973

The following BLAST results are available for this feature:

BLAST of Cmc07g0190801.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064117.1	2.6e-132	96.37	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK28621.1 gag-pol polyprotein [...	[more]
TYK11800.1	2.2e-99	76.61	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0039208.1	1.1e-93	72.29	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK18475.1 gag-pol polyprotein [...	[more]
KAA0060126.1	7.4e-87	69.29	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0042995.1	9.7e-87	64.92	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0190801.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc07g0190801.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAS8	1.3e-132	96.37	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030...	[more]
A0A5D3CK56	1.1e-99	76.61	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G...	[more]
A0A5D3D4K0	5.2e-94	72.29	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G...	[more]
A0A5A7V0X1	3.6e-87	69.29	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G0...	[more]
A0A5A7TNK7	4.7e-87	64.92	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G0...	[more]

BLAST of Cmc07g0190801.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0190801	Cmc07g0190801	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0190801.1-exon	Cmc07g0190801.1-exon-CMiso1.1chr07:10044054..10044803	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0190801.1-cds	Cmc07g0190801.1-cds-CMiso1.1chr07:10044054..10044803	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0190801.1	Cmc07g0190801.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding