Cmc07g0189201.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0189201.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr07: 7895280 .. 7895930 (+)
Sequence length	651
RNA-Seq Expression	Cmc07g0189201.1
Synteny	Cmc07g0189201.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACATACCCAGTAATCAAAAGACAGCAGAGGTGTGGTTCATTGATAGCGATTGTTCGAATCATATGACAGGTTTGAAGCCTGTATTCAAGGAGTTTAACGAAGGAGAAAAGTTGAAGGTAGAGCTCGAAAACGGTAAGGAGCTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAGTGGGTATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACAGAACGAGTTTTGGTGAAAGTAAAGATGACCCAAAGCAAAATGTTTCCGCTGGAAGTTTTAAATGTGGAAAATTTTGCTCTTACTGCTACTGCAACAAATACAACAAAGAACAACTCGAAGTTATGGTATTTAAGGTATGGACATCTTAATATTAAAGGGCTTTCTTTGCTAAATCAAAGAGATATGGTTATTGGGTTATCGAAAATCACTGCTATTAATATTTGTGAAGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTTCCTATTGGGAAAGCTTGGAGAGCCTCGAAATGTCTCGAGCTAATTCATGCTGATCTGTGA

mRNA sequence

ATGACAAACATACCCAGTAATCAAAAGACAGCAGAGGTGTGGTTCATTGATAGCGATTGTTCGAATCATATGACAGGTTTGAAGCCTGTATTCAAGGAGTTTAACGAAGGAGAAAAGTTGAAGGTAGAGCTCGAAAACGGTAAGGAGCTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAGTGGGTATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACAGAACGAGTTTTGGTGAAAGTAAAGATGACCCAAAGCAAAATGTTTCCGCTGGAAGTTTTAAATGTGGAAAATTTTGCTCTTACTGCTACTGCAACAAATACAACAAAGAACAACTCGAAGTTATGGTATTTAAGGTATGGACATCTTAATATTAAAGGGCTTTCTTTGCTAAATCAAAGAGATATGGTTATTGGGTTATCGAAAATCACTGCTATTAATATTTGTGAAGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTTCCTATTGGGAAAGCTTGGAGAGCCTCGAAATGTCTCGAGCTAATTCATGCTGATCTGTGA

Coding sequence (CDS)

ATGACAAACATACCCAGTAATCAAAAGACAGCAGAGGTGTGGTTCATTGATAGCGATTGTTCGAATCATATGACAGGTTTGAAGCCTGTATTCAAGGAGTTTAACGAAGGAGAAAAGTTGAAGGTAGAGCTCGAAAACGGTAAGGAGCTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAGTGGGTATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACAGAACGAGTTTTGGTGAAAGTAAAGATGACCCAAAGCAAAATGTTTCCGCTGGAAGTTTTAAATGTGGAAAATTTTGCTCTTACTGCTACTGCAACAAATACAACAAAGAACAACTCGAAGTTATGGTATTTAAGGTATGGACATCTTAATATTAAAGGGCTTTCTTTGCTAAATCAAAGAGATATGGTTATTGGGTTATCGAAAATCACTGCTATTAATATTTGTGAAGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTTCCTATTGGGAAAGCTTGGAGAGCCTCGAAATGTCTCGAGCTAATTCATGCTGATCTGTGA

Protein sequence

MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQSKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITAINICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL

Homology

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BLAST of Cmc07g0189201.1 vs. NCBI nr
Match: KAA0045239.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK19267.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 439.9 bits (1130), Expect = 1.3e-119
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI
Sbjct: 124 MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 183

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ
Sbjct: 184 ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 243

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA
Sbjct: 244 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 303

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL
Sbjct: 304 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 339

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BLAST of Cmc07g0189201.1 vs. NCBI nr
Match: KAA0032274.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 408.7 bits (1049), Expect = 3.2e-110
Identity = 201/216 (93.06%), Postives = 205/216 (94.91%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPS+QKTAEVWFIDS C NHMTGLKPVFKE NEGEKLKVEL NGKELQVEGKGTVGI
Sbjct: 208 MTNIPSDQKTAEVWFIDSSCLNHMTGLKPVFKELNEGEKLKVELGNGKELQVEGKGTVGI 267

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQT RVL KVKMTQ
Sbjct: 268 ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQ 327

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEV NV++FAL ATATNTTKNNSKLWYLRYGHLNIKG SLL QRDMVIGL KI+A
Sbjct: 328 SKMFPLEVSNVKSFALIATATNTTKNNSKLWYLRYGHLNIKGFSLLKQRDMVIGLPKISA 387

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL
Sbjct: 388 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 423

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BLAST of Cmc07g0189201.1 vs. NCBI nr
Match: TYK27735.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 408.3 bits (1048), Expect = 4.1e-110
Identity = 201/216 (93.06%), Postives = 207/216 (95.83%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPS+QKTAEVWFIDS CSNHMTGLKPVFKE NEGEKLKV+L NGKELQVEGKGTV I
Sbjct: 395 MTNIPSDQKTAEVWFIDSSCSNHMTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVI 454

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQT RVL KVKMTQ
Sbjct: 455 ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQ 514

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEV NVE+FALTATATNTTKNNS+LW+LRYGHLNIKGLSLLNQRDMVIGL KI+A
Sbjct: 515 SKMFPLEVSNVESFALTATATNTTKNNSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISA 574

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INICEGCVYGKQTRKSFPIGKAWRASKCLELIHA L
Sbjct: 575 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHAGL 610

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BLAST of Cmc07g0189201.1 vs. NCBI nr
Match: KAA0054939.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 403.7 bits (1036), Expect = 1.0e-108
Identity = 199/216 (92.13%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPS+QKTAEVWFIDS CSNHMTGLKPVFKE NEGEKLKVEL NGKELQVEGKG VGI
Sbjct: 167 MTNIPSDQKTAEVWFIDSGCSNHMTGLKPVFKELNEGEKLKVELGNGKELQVEGKGMVGI 226

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQ+VPDIGYNLLSVGQLMESGYSILFDDGA LIKNKQT RVLVKVKMTQ
Sbjct: 227 ETHHGNRILTNVQFVPDIGYNLLSVGQLMESGYSILFDDGAYLIKNKQTGRVLVKVKMTQ 286

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEV NVE+FALT TATNTTKNNS+LW+LRYGHLNIKGLSLLNQRDMVIGL KI+A
Sbjct: 287 SKMFPLEVSNVESFALTTTATNTTKNNSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISA 346

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INICEGCVYGKQT+KSFPIGKAWRASKCLELIH DL
Sbjct: 347 INICEGCVYGKQTQKSFPIGKAWRASKCLELIHVDL 382

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BLAST of Cmc07g0189201.1 vs. NCBI nr
Match: TYK00906.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 394.4 bits (1012), Expect = 6.2e-106
Identity = 196/216 (90.74%), Postives = 202/216 (93.52%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPS+QKT E WFID  CSNHMTGLKPVFKE NEGEKLKVEL NGK LQVEGKGTV I
Sbjct: 1   MTNIPSDQKTLEAWFIDGGCSNHMTGLKPVFKELNEGEKLKVELGNGKVLQVEGKGTVEI 60

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQYVPDIGYNLLSVGQLMES YSILFDDGACLIKNKQT RVL KVKMTQ
Sbjct: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESRYSILFDDGACLIKNKQTGRVLAKVKMTQ 120

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEV NVE+FALTATATNTTKNNS+LW+LRYGHLNIKGLSLLNQRDMVIGL KI+A
Sbjct: 121 SKMFPLEVSNVESFALTATATNTTKNNSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISA 180

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INIC+GCVYGKQTRKSFPIGKA RASKCLELIHADL
Sbjct: 181 INICKGCVYGKQTRKSFPIGKALRASKCLELIHADL 216

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BLAST of Cmc07g0189201.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-13
Identity = 58/206 (28.16%), Postives = 103/206 (50.00%), Query Frame = 0


Query: 14  WFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGIETHHG-NRILTNV 73
           W +D+  S+H T ++ +F  +  G+   V++ N    ++ G G + I+T+ G   +L +V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353

Query: 74  QYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQSKMFPLEVLNVE 133
           ++VPD+  NL+S   L   GY   F +        Q  R L K  +  +K      L   
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFAN--------QKWR-LTKGSLVIAKGVARGTLYRT 413

Query: 134 NFALTATATNTTKN--NSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITAINICEGCVYG 193
           N  +     N  ++  +  LW+ R GH++ KGL +L ++ + I  +K T +  C+ C++G
Sbjct: 414 NAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSL-ISYAKGTTVKPCDYCLFG 473

Query: 194 KQTRKSFPIGKAWRASKCLELIHADL 217
           KQ R SF      R    L+L+++D+
Sbjct: 474 KQHRVSFQTSSE-RKLNILDLVYSDV 488

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BLAST of Cmc07g0189201.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 54/209 (25.84%), Postives = 101/209 (48.33%), Query Frame = 0


Query: 16  IDSDCSNHMTGLKPVFKEFNE-GEKLKVEL-ENGKELQVEGKGTVGIETHHGNRILTNVQ 75
           +DS  S+H+   + ++ +  E    LK+ + + G+ +    +G V +   H    L +V 
Sbjct: 291 LDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDH-EITLEDVL 350

Query: 76  YVPDIGYNLLSVGQLMESGYSILFD-DGACLIKNKQTERVLVKVKMTQSKMFPLEVLNVE 135
           +  +   NL+SV +L E+G SI FD  G  + KN       + V      +  + V+N +
Sbjct: 351 FCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNG------LMVVKNSGMLNNVPVINFQ 410

Query: 136 NFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKIT----AINICEGCV 195
            +++ A      KNN +LW+ R+GH++   L  + +++M    S +     +  ICE C+
Sbjct: 411 AYSINA----KHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCL 470

Query: 196 YGKQTRKSF-PIGKAWRASKCLELIHADL 217
            GKQ R  F  +       + L ++H+D+
Sbjct: 471 NGKQARLPFKQLKDKTHIKRPLFVVHSDV 488

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BLAST of Cmc07g0189201.1 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 24/74 (32.43%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 143 TTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITAINICEGCVYGKQTRKSFPIGKA 202
           T K+ ++LW+ R  H++ +G+ LL ++   +  SK++++  CE C+YGK  R +F  G+ 
Sbjct: 64  TAKDETRLWHSRLAHMSQRGMELLVKKGF-LDSSKVSSLKFCEDCIYGKTHRVNFSTGQ- 123

Query: 203 WRASKCLELIHADL 217
                 L+ +H+DL
Sbjct: 124 HTTKNPLDYVHSDL 135

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BLAST of Cmc07g0189201.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.3e-05
Identity = 50/213 (23.47%), Postives = 101/213 (47.42%), Query Frame = 0


Query: 14  WFIDSDCSNHMT---GLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILT 73
           W +DS  ++H+T       + + +  G+ + V   +G  + +   G+  + T      L 
Sbjct: 331 WLLDSGATHHITSDFNNLSLHQPYTGGDDVMV--ADGSTIPISHTGSTSLSTKSRPLNLH 390

Query: 74  NVQYVPDIGYNLLSVGQLME-SGYSILFDDGACLIKNKQTERVLVKVKMTQSKMFPLEVL 133
           N+ YVP+I  NL+SV +L   +G S+ F   +  +K+  T   L++ K T+ +++   + 
Sbjct: 391 NILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGK-TKDELYEWPIA 450

Query: 134 NVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITAIN------I 193
           + +  +L A+ ++   ++S  W+ R GH      S+LN    VI    ++ +N       
Sbjct: 451 SSQPVSLFASPSSKATHSS--WHARLGH---PAPSILNS---VISNYSLSVLNPSHKFLS 510

Query: 194 CEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           C  C+  K  +  F       +++ LE I++D+
Sbjct: 511 CSDCLINKSNKVPFS-QSTINSTRPLEYIYSDV 531

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BLAST of Cmc07g0189201.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.9e-05
Identity = 51/218 (23.39%), Postives = 99/218 (45.41%), Query Frame = 0


Query: 3   NIPSNQKTAEVWFIDSDCSNHMT---GLKPVFKEFNEGEKLKVELENGKELQVEGKGTVG 62
           N P N   A  W +DS  ++H+T         + +  G+   V + +G  + +   G+  
Sbjct: 302 NSPYN---ANNWLLDSGATHHITSDFNNLSFHQPYTGGD--DVMIADGSTIPITHTGSAS 361

Query: 63  IETHHGNRILTNVQYVPDIGYNLLSVGQLMESG-YSILFDDGACLIKNKQTERVLVKVKM 122
           + T   +  L  V YVP+I  NL+SV +L  +   S+ F   +  +K+  T   L++ K 
Sbjct: 362 LPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGK- 421

Query: 123 TQSKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKI 182
           T+ +++   + + +  A++  A+  +K     W+ R GH ++  L+ +     +  L+  
Sbjct: 422 TKDELYEWPIASSQ--AVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPS 481

Query: 183 TAINICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
             +  C  C   K  +  F       +SK LE I++D+
Sbjct: 482 HKLLSCSDCFINKSHKVPFS-NSTITSSKPLEYIYSDV 510

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BLAST of Cmc07g0189201.1 vs. ExPASy TrEMBL
Match: A0A5A7TVH1 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00750 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.2e-120
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI
Sbjct: 124 MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 183

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ
Sbjct: 184 ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 243

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA
Sbjct: 244 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 303

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL
Sbjct: 304 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 339

[Close]

BLAST of Cmc07g0189201.1 vs. ExPASy TrEMBL
Match: A0A5A7SM62 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001140 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.5e-110
Identity = 201/216 (93.06%), Postives = 205/216 (94.91%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPS+QKTAEVWFIDS C NHMTGLKPVFKE NEGEKLKVEL NGKELQVEGKGTVGI
Sbjct: 208 MTNIPSDQKTAEVWFIDSSCLNHMTGLKPVFKELNEGEKLKVELGNGKELQVEGKGTVGI 267

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQT RVL KVKMTQ
Sbjct: 268 ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQ 327

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEV NV++FAL ATATNTTKNNSKLWYLRYGHLNIKG SLL QRDMVIGL KI+A
Sbjct: 328 SKMFPLEVSNVKSFALIATATNTTKNNSKLWYLRYGHLNIKGFSLLKQRDMVIGLPKISA 387

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL
Sbjct: 388 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 423

[Close]

BLAST of Cmc07g0189201.1 vs. ExPASy TrEMBL
Match: A0A5D3DWP2 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00850 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.0e-110
Identity = 201/216 (93.06%), Postives = 207/216 (95.83%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPS+QKTAEVWFIDS CSNHMTGLKPVFKE NEGEKLKV+L NGKELQVEGKGTV I
Sbjct: 395 MTNIPSDQKTAEVWFIDSSCSNHMTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVI 454

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQT RVL KVKMTQ
Sbjct: 455 ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQ 514

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEV NVE+FALTATATNTTKNNS+LW+LRYGHLNIKGLSLLNQRDMVIGL KI+A
Sbjct: 515 SKMFPLEVSNVESFALTATATNTTKNNSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISA 574

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INICEGCVYGKQTRKSFPIGKAWRASKCLELIHA L
Sbjct: 575 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHAGL 610

[Close]

BLAST of Cmc07g0189201.1 vs. ExPASy TrEMBL
Match: A0A5A7UN91 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00520 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 4.9e-109
Identity = 199/216 (92.13%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPS+QKTAEVWFIDS CSNHMTGLKPVFKE NEGEKLKVEL NGKELQVEGKG VGI
Sbjct: 167 MTNIPSDQKTAEVWFIDSGCSNHMTGLKPVFKELNEGEKLKVELGNGKELQVEGKGMVGI 226

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQ+VPDIGYNLLSVGQLMESGYSILFDDGA LIKNKQT RVLVKVKMTQ
Sbjct: 227 ETHHGNRILTNVQFVPDIGYNLLSVGQLMESGYSILFDDGAYLIKNKQTGRVLVKVKMTQ 286

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEV NVE+FALT TATNTTKNNS+LW+LRYGHLNIKGLSLLNQRDMVIGL KI+A
Sbjct: 287 SKMFPLEVSNVESFALTTTATNTTKNNSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISA 346

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INICEGCVYGKQT+KSFPIGKAWRASKCLELIH DL
Sbjct: 347 INICEGCVYGKQTQKSFPIGKAWRASKCLELIHVDL 382

[Close]

BLAST of Cmc07g0189201.1 vs. ExPASy TrEMBL
Match: A0A5D3BRM6 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00690 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.0e-106
Identity = 196/216 (90.74%), Postives = 202/216 (93.52%), Query Frame = 0


Query: 1   MTNIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGI 60
           MTNIPS+QKT E WFID  CSNHMTGLKPVFKE NEGEKLKVEL NGK LQVEGKGTV I
Sbjct: 1   MTNIPSDQKTLEAWFIDGGCSNHMTGLKPVFKELNEGEKLKVELGNGKVLQVEGKGTVEI 60

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGYSILFDDGACLIKNKQTERVLVKVKMTQ 120
           ETHHGNRILTNVQYVPDIGYNLLSVGQLMES YSILFDDGACLIKNKQT RVL KVKMTQ
Sbjct: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESRYSILFDDGACLIKNKQTGRVLAKVKMTQ 120

Query: 121 SKMFPLEVLNVENFALTATATNTTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITA 180
           SKMFPLEV NVE+FALTATATNTTKNNS+LW+LRYGHLNIKGLSLLNQRDMVIGL KI+A
Sbjct: 121 SKMFPLEVSNVESFALTATATNTTKNNSELWHLRYGHLNIKGLSLLNQRDMVIGLPKISA 180

Query: 181 INICEGCVYGKQTRKSFPIGKAWRASKCLELIHADL 217
           INIC+GCVYGKQTRKSFPIGKA RASKCLELIHADL
Sbjct: 181 INICKGCVYGKQTRKSFPIGKALRASKCLELIHADL 216

[Close]

BLAST of Cmc07g0189201.1 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-07
Identity = 24/74 (32.43%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 143 TTKNNSKLWYLRYGHLNIKGLSLLNQRDMVIGLSKITAINICEGCVYGKQTRKSFPIGKA 202
           T K+ ++LW+ R  H++ +G+ LL ++   +  SK++++  CE C+YGK  R +F  G+ 
Sbjct: 64  TAKDETRLWHSRLAHMSQRGMELLVKKGF-LDSSKVSSLKFCEDCIYGKTHRVNFSTGQ- 123

Query: 203 WRASKCLELIHADL 217
                 L+ +H+DL
Sbjct: 124 HTTKNPLDYVHSDL 135

[Close]

BLAST of Cmc07g0189201.1 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-05
Identity = 35/132 (26.52%), Postives = 59/132 (44.70%), Query Frame = 0


Query: 3   NIPSNQKTAEVWFIDSDCSNHMTGLKPVFKEFNEGEKLKVELENGKELQVEGKGTVGIET 62
           N+ +     ++W I      +MT     F   +   K  V   +G  L VEGKG V I  
Sbjct: 269 NLGAKTYDDDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRM 328

Query: 63  HHG-NRILTNVQYVPDIGYNLLSVGQLMESGYSILFD-DGACLIKNKQTERVLVKVKMTQ 122
             G  + + NV +VP +  N+LS G+++   YSI     G C++ ++   ++   + MT 
Sbjct: 329 KEGKKKTIRNVIFVPGLNRNVLSFGKMVSKRYSISTGMQGECIVCDRGENKLGDAMWMTD 388

Query: 123 SKMFPLEVLNVE 133
                L +  +E
Sbjct: 389 ETEMALRLKVIE 400

The following BLAST results are available for this feature:

BLAST of Cmc07g0189201.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045239.1	1.3e-119	100.00	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK19267.1 p...	[more]
KAA0032274.1	3.2e-110	93.06	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
TYK27735.1	4.1e-110	93.06	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0054939.1	1.0e-108	92.13	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 p...	[more]
TYK00906.1	6.2e-106	90.74	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0189201.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.7e-13	28.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-08	25.84	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P93293	1.5e-06	32.43	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	1.3e-05	23.47	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.9e-05	23.39	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc07g0189201.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVH1	6.2e-120	100.00	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SM62	1.5e-110	93.06	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DWP2	2.0e-110	93.06	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UN91	4.9e-109	92.13	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BRM6	3.0e-106	90.74	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Cmc07g0189201.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	1.1e-07	32.43	Gag-Pol-related retrotransposon family protein	[more]
AT3G21000.1	2.3e-05	26.52	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 129..192 e-value: 4.6E-10 score: 39.2
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 7..194
None	No IPR available	PANTHER	PTHR34676:SF9	SUBFAMILY NOT NAMED	coord: 7..194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0189201	Cmc07g0189201	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0189201.1-exon	Cmc07g0189201.1-exon-CMiso1.1chr07:7895280..7895930	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0189201.1-cds	Cmc07g0189201.1-cds-CMiso1.1chr07:7895280..7895930	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0189201.1	Cmc07g0189201.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding