Cmc07g0185241.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0185241.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 3313174 .. 3313602 (-)
Sequence length	429
RNA-Seq Expression	Cmc07g0185241.1
Synteny	Cmc07g0185241.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTCATATTGCCATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCGTTTTTGAATGGAAATCTTGAAGAGAGTATCTATATGGTCCAACTAGAGGGGTTTATACAAAAGGATCAAGAACAAAAAGTTTATAAACTTCAAAAATCCATTTATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGATTTGATACTGCGATCAAATCTTATCGTTTTGAACAGAATATTGATGAACCTTGTGTTTACAAAAGGATCATAAATTTTACTGTTGTATTCTTAGTTCTGTATGTAAATGACATTCTACTCATTGGGAATGATGTAGGTCATCTAACTGATATTAAGTAA

mRNA sequence

ATGCAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTCATATTGCCATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCGTTTTTGAATGGAAATCTTGAAGAGAGTATCTATATGGTCCAACTAGAGGGGTTTATACAAAAGGATCAAGAACAAAAAGTTTATAAACTTCAAAAATCCATTTATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGATTTGATACTGCGATCAAATCTTATCGTTTTGAACAGAATATTGATGAACCTTGTGTTTACAAAAGGATCATAAATTTTACTGTTGTATTCTTAGTTCTGTATGTAAATGACATTCTACTCATTGGGAATGATGTAGGTCATCTAACTGATATTAAGTAA

Coding sequence (CDS)

ATGCAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTCATATTGCCATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCGTTTTTGAATGGAAATCTTGAAGAGAGTATCTATATGGTCCAACTAGAGGGGTTTATACAAAAGGATCAAGAACAAAAAGTTTATAAACTTCAAAAATCCATTTATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGATTTGATACTGCGATCAAATCTTATCGTTTTGAACAGAATATTGATGAACCTTGTGTTTACAAAAGGATCATAAATTTTACTGTTGTATTCTTAGTTCTGTATGTAAATGACATTCTACTCATTGGGAATGATGTAGGTCATCTAACTGATATTAAGTAA

Protein sequence

MQKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGFIQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFLVLYVNDILLIGNDVGHLTDIK

Homology

[Close]

BLAST of Cmc07g0185241.1 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 129/141 (91.49%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 2   QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
           QKEGIDYEETFS IAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQ EGF
Sbjct: 209 QKEGIDYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGF 268

Query: 62  IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
           IQK QEQKV KLQKSIYGLKQASRSWNIRFDT IKSY FEQN+DEPCVYKRIIN TV FL
Sbjct: 269 IQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFL 328

Query: 122 VLYVNDILLIGNDVGHLTDIK 143
           VLYV+DILLIGN+V HLTDIK
Sbjct: 329 VLYVDDILLIGNEVDHLTDIK 349

[Close]

BLAST of Cmc07g0185241.1 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 244.6 bits (623), Expect = 5.2e-61
Identity = 120/141 (85.11%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 2    QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
            QKEG+DYEETFS +AM+KSIRILLSIATFY+YEIWQMDVKTAFLNGNLEESIYMVQ EGF
Sbjct: 879  QKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGF 938

Query: 62   IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
            I +DQEQKV KLQKSIYGLKQASRSWNIRFDTAIKSY FEQN+DEPCVYK+I+N  V FL
Sbjct: 939  IAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFL 998

Query: 122  VLYVNDILLIGNDVGHLTDIK 143
            +LYV+DILLIGNDV +LTD+K
Sbjct: 999  ILYVDDILLIGNDVEYLTDVK 1019

[Close]

BLAST of Cmc07g0185241.1 vs. NCBI nr
Match: KAA0043610.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.4e-58
Identity = 118/142 (83.10%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MQKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEG 60
           ++KEG++Y+ETFS + M+KSIRILLSI TFYDYEI QMDVKTAFLNGNLEESIYMVQ EG
Sbjct: 67  IEKEGVNYKETFSPVVMLKSIRILLSIPTFYDYEICQMDVKTAFLNGNLEESIYMVQPEG 126

Query: 61  FIQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVF 120
           FIQK QEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSY FE N+DEPCVYKRII  TV F
Sbjct: 127 FIQKGQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYGFEHNVDEPCVYKRIIKSTVAF 186

Query: 121 LVLYVNDILLIGNDVGHLTDIK 143
           LVL V++ILLIGND+GHLT+IK
Sbjct: 187 LVLDVDNILLIGNDIGHLTNIK 208

[Close]

BLAST of Cmc07g0185241.1 vs. NCBI nr
Match: KAA0065369.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK20866.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.2e-58
Identity = 118/141 (83.69%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 2   QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
           Q+EG+D EETFS +AM+KSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM QLEG 
Sbjct: 57  QREGVDCEETFSLVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQLEGL 116

Query: 62  IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
               QE+KVYKLQKSIYGLKQASRSWNIRFDTAIKSY FEQN+DEPCVYK+++N  VVFL
Sbjct: 117 ---GQEKKVYKLQKSIYGLKQASRSWNIRFDTAIKSYDFEQNVDEPCVYKKVVNSIVVFL 176

Query: 122 VLYVNDILLIGNDVGHLTDIK 143
            LYV+DILLIGNDVG+LTDIK
Sbjct: 177 ELYVDDILLIGNDVGYLTDIK 194

[Close]

BLAST of Cmc07g0185241.1 vs. NCBI nr
Match: KAA0058278.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 9.2e-58
Identity = 115/141 (81.56%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 2   QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
           Q+EG+DYEETFSH+AM+KSIRILLSIATFYDYEIWQMDVKTAFLN NLEESI+M Q EGF
Sbjct: 627 QREGVDYEETFSHVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGF 686

Query: 62  IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
           I + QEQKV KL +SIYGLKQASRSWNIRFDTAIKSY F+QN+DEPCVYK+I    V FL
Sbjct: 687 ITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFL 746

Query: 122 VLYVNDILLIGNDVGHLTDIK 143
           VLYV+DILLIGNDVG+LTD+K
Sbjct: 747 VLYVDDILLIGNDVGYLTDVK 767

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-30
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 2    QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
            QK+GID++E FS +  + SIR +LS+A   D E+ Q+DVKTAFL+G+LEE IYM Q EGF
Sbjct: 885  QKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGF 944

Query: 62   IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVY-KRIINFTVVF 121
                ++  V KL KS+YGLKQA R W ++FD+ +KS  + +   +PCVY KR      + 
Sbjct: 945  EVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFII 1004

Query: 122  LVLYVNDILLIGNDVGHLTDIK 143
            L+LYV+D+L++G D G +  +K
Sbjct: 1005 LLLYVDDMLIVGKDKGLIAKLK 1026

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-22
Identity = 53/133 (39.85%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 2    QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
            Q+ G+DY ETFS +    SIRI+L +A    + I Q+DV  AFL G L + +YM Q  GF
Sbjct: 1011 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGF 1070

Query: 62   IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
            + KD+   V +L+K+IYGLKQA R+W +   T + +  F  +I +  ++      +++++
Sbjct: 1071 VDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYM 1130

Query: 122  VLYVNDILLIGND 135
            ++YV+DIL+ GND
Sbjct: 1131 LVYVDDILITGND 1143

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.9e-22
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 2    QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
            Q+ G+DY ETFS +    SIRI+L +A    + I Q+DV  AFL G L + +YM Q  GF
Sbjct: 1028 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGF 1087

Query: 62   IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
            I KD+   V KL+K++YGLKQA R+W +     + +  F  ++ +  ++      ++V++
Sbjct: 1088 IDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYM 1147

Query: 122  VLYVNDILLIGND 135
            ++YV+DIL+ GND
Sbjct: 1148 LVYVDDILITGND 1160

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.8 bits (260), Expect = 8.4e-22
Identity = 61/144 (42.36%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 2    QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
            QK  IDYEETF+ +A I S R +LS+   Y+ ++ QMDVKTAFLNG L+E IYM   +G 
Sbjct: 965  QKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI 1024

Query: 62   IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVY---KRIINFTV 121
                    V KL K+IYGLKQA+R W   F+ A+K   F  +  + C+Y   K  IN   
Sbjct: 1025 --SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINEN- 1084

Query: 122  VFLVLYVNDILLIGNDVGHLTDIK 143
            ++++LYV+D+++   D+  + + K
Sbjct: 1085 IYVLLYVDDVVIATGDMTRMNNFK 1105

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-09
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 38  MDVKTAFLNGNLEESIYMVQLEGFIQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKS 97
           MDV TAFLN  ++E IY+ Q  GF+ +     V++L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 98  YRFEQNIDEPCVYKRIINFTVVFLVLYVNDILL 131
             F ++  E  +Y R  +   +++ +YV+D+L+
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLV 93

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.1e-64
Identity = 129/141 (91.49%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 2   QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
           QKEGIDYEETFS IAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQ EGF
Sbjct: 209 QKEGIDYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGF 268

Query: 62  IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
           IQK QEQKV KLQKSIYGLKQASRSWNIRFDT IKSY FEQN+DEPCVYKRIIN TV FL
Sbjct: 269 IQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFL 328

Query: 122 VLYVNDILLIGNDVGHLTDIK 143
           VLYV+DILLIGN+V HLTDIK
Sbjct: 329 VLYVDDILLIGNEVDHLTDIK 349

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.5e-61
Identity = 120/141 (85.11%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 2    QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
            QKEG+DYEETFS +AM+KSIRILLSIATFY+YEIWQMDVKTAFLNGNLEESIYMVQ EGF
Sbjct: 879  QKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGF 938

Query: 62   IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
            I +DQEQKV KLQKSIYGLKQASRSWNIRFDTAIKSY FEQN+DEPCVYK+I+N  V FL
Sbjct: 939  IAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFL 998

Query: 122  VLYVNDILLIGNDVGHLTDIK 143
            +LYV+DILLIGNDV +LTD+K
Sbjct: 999  ILYVDDILLIGNDVEYLTDVK 1019

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy TrEMBL
Match: A0A5A7TK28 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00480 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 118/142 (83.10%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MQKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEG 60
           ++KEG++Y+ETFS + M+KSIRILLSI TFYDYEI QMDVKTAFLNGNLEESIYMVQ EG
Sbjct: 67  IEKEGVNYKETFSPVVMLKSIRILLSIPTFYDYEICQMDVKTAFLNGNLEESIYMVQPEG 126

Query: 61  FIQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVF 120
           FIQK QEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSY FE N+DEPCVYKRII  TV F
Sbjct: 127 FIQKGQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYGFEHNVDEPCVYKRIIKSTVAF 186

Query: 121 LVLYVNDILLIGNDVGHLTDIK 143
           LVL V++ILLIGND+GHLT+IK
Sbjct: 187 LVLDVDNILLIGNDIGHLTNIK 208

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy TrEMBL
Match: A0A5A7VIS5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00310 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.5e-58
Identity = 118/141 (83.69%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 2   QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
           Q+EG+D EETFS +AM+KSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM QLEG 
Sbjct: 57  QREGVDCEETFSLVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQLEGL 116

Query: 62  IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
               QE+KVYKLQKSIYGLKQASRSWNIRFDTAIKSY FEQN+DEPCVYK+++N  VVFL
Sbjct: 117 ---GQEKKVYKLQKSIYGLKQASRSWNIRFDTAIKSYDFEQNVDEPCVYKKVVNSIVVFL 176

Query: 122 VLYVNDILLIGNDVGHLTDIK 143
            LYV+DILLIGNDVG+LTDIK
Sbjct: 177 ELYVDDILLIGNDVGYLTDIK 194

[Close]

BLAST of Cmc07g0185241.1 vs. ExPASy TrEMBL
Match: A0A5A7USZ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006070 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.4e-58
Identity = 115/141 (81.56%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 2   QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
           Q+EG+DYEETFSH+AM+KSIRILLSIATFYDYEIWQMDVKTAFLN NLEESI+M Q EGF
Sbjct: 627 QREGVDYEETFSHVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGF 686

Query: 62  IQKDQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFTVVFL 121
           I + QEQKV KL +SIYGLKQASRSWNIRFDTAIKSY F+QN+DEPCVYK+I    V FL
Sbjct: 687 ITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFL 746

Query: 122 VLYVNDILLIGNDVGHLTDIK 143
           VLYV+DILLIGNDVG+LTD+K
Sbjct: 747 VLYVDDILLIGNDVGYLTDVK 767

[Close]

BLAST of Cmc07g0185241.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-21
Identity = 50/145 (34.48%), Postives = 90/145 (62.07%), Query Frame = 0


Query: 2   QKEGIDYEETFSHIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQLEGF 61
           Q+EGID+ ETFS +  + S++++L+I+  Y++ + Q+D+  AFLNG+L+E IYM    G+
Sbjct: 157 QQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

Query: 62  IQKDQE----QKVYKLQKSIYGLKQASRSWNIRFDTAIKSYRFEQNIDEPCVYKRIINFT 121
             +  +      V  L+KSIYGLKQASR W ++F   +  + F Q+  +   + +I    
Sbjct: 217 AARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATL 276

Query: 122 VVFLVLYVNDILLIGNDVGHLTDIK 143
            + +++YV+DI++  N+   + ++K
Sbjct: 277 FLCVLVYVDDIIICSNNDAAVDELK 301

The following BLAST results are available for this feature:

BLAST of Cmc07g0185241.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045356.1	1.5e-63	91.49	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	5.2e-61	85.11	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0043610.1	2.4e-58	83.10	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0065369.1	3.2e-58	83.69	gag/pol protein [Cucumis melo var. makuwa] >TYK20866.1 gag/pol protein [Cucumis ...	[more]
KAA0058278.1	9.2e-58	81.56	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0185241.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.2e-30	47.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.2e-22	39.85	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.9e-22	39.85	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	8.4e-22	42.36	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	4.8e-09	35.48	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc07g0185241.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA2	7.1e-64	91.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
E2GK51	2.5e-61	85.11	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TK28	1.2e-58	83.10	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G0048...	[more]
A0A5A7VIS5	1.5e-58	83.69	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G0031...	[more]
A0A5A7USZ2	4.4e-58	81.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G0060...	[more]

BLAST of Cmc07g0185241.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.5e-21	34.48	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..142 e-value: 3.0E-39 score: 135.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..131
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 30..136

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0185241	Cmc07g0185241	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0185241.1-exon	Cmc07g0185241.1-exon-CMiso1.1chr07:3313174..3313602	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0185241.1-cds	Cmc07g0185241.1-cds-CMiso1.1chr07:3313174..3313602	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0185241.1	Cmc07g0185241.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding