Cmc07g0180611.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc07g0180611.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr07: 244427 .. 246485 (+)
Sequence length2059
RNA-Seq ExpressionCmc07g0180611.1
SyntenyCmc07g0180611.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTGGAATTGTTATAATTGTGTTGGTTCAAAAGTGGCAGAGAAAAGTGTGATAATGGGAAAGCAGAAAAAAGAAAGCATGTGAATTAGATATTACAACAAAATTGAATTCAGACTTCATTAGAGGAAAAAATGAATGAGAGAGAGAGAGAGAGAGAGAGGACAGATGTATCATCAAGAGGTAAAAAGTGGGGTTTGTTTGATTTTGATACCTTCAAACTTGTTATAATGAGATTAGATGGATAGATAAATCCCACTACACACCCCTATGCTTTTTTATTTCTAAAAATATATTTATTTTATAATTAGAATAATTTAGGTATCTCCAACATTGATTTTCCCCTAATCTGGAAATTCATAAAATTTAGACATATGAAAAGGAAGAGAGAATTAATAAAAAGTGGAAGGCAGAATTAAGTTTATGTTCAAAATAAAGAGCAAGAAATTGGTAATCTAAGGAAATAAATTAATAAAAGTTAAAAAGAACTGATTTTAGAAAGAGTAGTTGGAAACTTCAGACATGAAAACTAATTTTAAACCTAAAAAATTTGATAGTGATTATCATGTTGAGAAGATGAGCGAAAGTGAAAAGGACAGAGAGCAGCAGAGCAGCAAGCAGCCATGGCTATGGCTATGGAAGGTAACAAAAATTGGATTTAAGGATTTACTAAAACTTTTTTTAATTAGAAATGGAGCAGTTGCAGTTGCAGCTGCAGAATTATTCCATTTTCAAAAAAAAAAAAAAAAAACTTTATGGATCTGATCTGACCTCTTTAAATCTTCAGGGAAGAGGAAAGAGAAAAATTGGCATTGTGATGAAGAGAGAGATGAGGAGAGGGAAGCATTTGGTGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCTGTACTGTAAAGTTATGCCATCTCCGCTGAAAATCGACGACAAGATTTGAAGTCAATATTCACAACAGAAACGGAATTATCAGAGCGGCCGATTTCGAATTCAGGGGAATCTCCTTTGTTTACAACTTGAATACATCCACGATTTTCAGTAATTACATGAATTTGATTAAGAAAGCTATTTACAACACGGAGGAAGGAAGGAACAAGAATCGCAGTAGTTAAGAGAAAAACCCTAGAGCTAAGGTAAGAACCTATTCGTCTTATCATCTCCTTCCTCTTTCACTCTGGATTCCGTTCCGCCGTTCGAACTGGAGCTCGCCGGAAAACCGCCGCACTTCTGGCACTGACTTACAACCAGAATCTGACGGCAGGAAGGACAGGAAGAGTGAGATCGGAACCAGGTATCGATGCAGGACACGTGAAATCCATGGCCACACTGCGGCAGCACACGGATTTCATCACCGACAGCGAACTCCGCGAGGCAGATCGCGCAATCTGAGAACTGAGCAGAAAACTCAGCAGTGAAAGTGTACTTGGGAAGAGACCTTAGGATCTTCTTCTTGAGACCTTTGTTGGAGGCAGGAGGCGGGGGAGGACGAGTGGAACCAGCGCCAGCACCATCACCAGCAAGGTGTCGTAGCCAGGCGCAGCGGGCAACCGCAACAAGACCGAGGACGCAAATCAAAGCGCAGAGGAGGGCGGCGAGGATTATGACGAAGTCAGAGTCATACCTAGGCTCGAAGGTATCGGAGGTGGCGGAGGAATTGACGCCGGCAAGGTACCTGAAGGGACGCATTTGAATCGGCGAGAGAAAAGGAAGAGGTTATAGGATAAAGAGATGAGAAGGGCCGTCGTTTTGAATCAACCGTGGGCGTAACGTTTGTCGTTTCGAGGGGATTTTGAGGGGGTTTTATACTGAAACGGGATTCGGCCTTGCGTTTTACCGCTTTCGTAGTTGCTCATTACACTCACCCACCCCAATACTAACGCCGTTTATATAGACGCCACCATCTCATGACTATTAATTTACATTATTATCATTGGATAATATACTCCACAGATACACTATTCTAATCCCTCTCATCACTACGTTTAACTTCA

mRNA sequence

TGTTGGAATTGTTATAATTGTGTTGGTTCAAAAGTGGCAGAGAAAAGTGTGATAATGGGAAAGCAGAAAAAAGAAAGCATGTGAATTAGATATTACAACAAAATTGAATTCAGACTTCATTAGAGGAAAAAATGAATGAGAGAGAGAGAGAGAGAGAGAGGACAGATGTATCATCAAGAGGTAAAAAGTGGGGTTTGTTTGATTTTGATACCTTCAAACTTGTTATAATGAGATTAGATGGATAGATAAATCCCACTACACACCCCTATGCTTTTTTATTTCTAAAAATATATTTATTTTATAATTAGAATAATTTAGGTATCTCCAACATTGATTTTCCCCTAATCTGGAAATTCATAAAATTTAGACATATGAAAAGGAAGAGAGAATTAATAAAAAGTGGAAGGCAGAATTAAGTTTATGTTCAAAATAAAGAGCAAGAAATTGGTAATCTAAGGAAATAAATTAATAAAAGTTAAAAAGAACTGATTTTAGAAAGAGTAGTTGGAAACTTCAGACATGAAAACTAATTTTAAACCTAAAAAATTTGATAGTGATTATCATGTTGAGAAGATGAGCGAAAGTGAAAAGGACAGAGAGCAGCAGAGCAGCAAGCAGCCATGGCTATGGCTATGGAAGGTAACAAAAATTGGATTTAAGGATTTACTAAAACTTTTTTTAATTAGAAATGGAGCAGTTGCAGTTGCAGCTGCAGAATTATTCCATTTTCAAAAAAAAAAAAAAAAAACTTTATGGATCTGATCTGACCTCTTTAAATCTTCAGGGAAGAGGAAAGAGAAAAATTGGCATTGTGATGAAGAGAGAGATGAGGAGAGGGAAGCATTTGGTGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCTGTACTGTAAAGTTATGCCATCTCCGCTGAAAATCGACGACAAGATTTGAAGTCAATATTCACAACAGAAACGGAATTATCAGAGCGGCCGATTTCGAATTCAGGGGAATCTCCTTTGTTTACAACTTGAATACATCCACGATTTTCAGTAATTACATGAATTTGATTAAGAAAGCTATTTACAACACGGAGGAAGGAAGGAACAAGAATCGCAGTAGTTAAGAGAAAAACCCTAGAGCTAAGGTAAGAACCTATTCGTCTTATCATCTCCTTCCTCTTTCACTCTGGATTCCGTTCCGCCGTTCGAACTGGAGCTCGCCGGAAAACCGCCGCACTTCTGGCACTGACTTACAACCAGAATCTGACGGCAGGAAGGACAGGAAGAGTGAGATCGGAACCAGGTATCGATGCAGGACACGTGAAATCCATGGCCACACTGCGGCAGCACACGGATTTCATCACCGACAGCGAACTCCGCGAGGCAGATCGCGCAATCTGAGAACTGAGCAGAAAACTCAGCAGTGAAAGTGTACTTGGGAAGAGACCTTAGGATCTTCTTCTTGAGACCTTTGTTGGAGGCAGGAGGCGGGGGAGGACGAGTGGAACCAGCGCCAGCACCATCACCAGCAAGGTGTCGTAGCCAGGCGCAGCGGGCAACCGCAACAAGACCGAGGACGCAAATCAAAGCGCAGAGGAGGGCGGCGAGGATTATGACGAAGTCAGAGTCATACCTAGGCTCGAAGGTATCGGAGGTGGCGGAGGAATTGACGCCGGCAAGGTACCTGAAGGGACGCATTTGAATCGGCGAGAGAAAAGGAAGAGGTTATAGGATAAAGAGATGAGAAGGGCCGTCGTTTTGAATCAACCGTGGGCGTAACGTTTGTCGTTTCGAGGGGATTTTGAGGGGGTTTTATACTGAAACGGGATTCGGCCTTGCGTTTTACCGCTTTCGTAGTTGCTCATTACACTCACCCACCCCAATACTAACGCCGTTTATATAGACGCCACCATCTCATGACTATTAATTTACATTATTATCATTGGATAATATACTCCACAGATACACTATTCTAATCCCTCTCATCACTACGTTTAACTTCA

Coding sequence (CDS)

ATGGAGCAGTTGCAGTTGCAGCTGCAGAATTATTCCATTTTCAAAAAAAAAAAAAAAAAACTTTATGGATCTGATCTGACCTCTTTAAATCTTCAGGGAAGAGGAAAGAGAAAAATTGGCATTGTGATGAAGAGAGAGATGAGGAGAGGGAAGCATTTGGTGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCTGTACTGTAAAGTTATGCCATCTCCGCTGA

Protein sequence

MEQLQLQLQNYSIFKKKKKKLYGSDLTSLNLQGRGKRKIGIVMKREMRRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIACTVKLCHLR
Homology
[Close]
BLAST of Cmc07g0180611.1 vs. NCBI nr
Match: KGN55527.1 (hypothetical protein Csa_012641 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-12
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 44 KREMRRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIACTVKL 96
          +R+  RGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIA   K+
Sbjct: 17 ERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIALYCKV 68

[Close]
BLAST of Cmc07g0180611.1 vs. ExPASy TrEMBL
Match: A0A0A0L4N5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664350 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 44 KREMRRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIACTVKL 96
          +R+  RGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIA   K+
Sbjct: 17 ERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIALYCKV 68

The following BLAST results are available for this feature:
BLAST of Cmc07g0180611.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55527.12.4e-1284.62hypothetical protein Csa_012641 [Cucumis sativus][more]
BLAST of Cmc07g0180611.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc07g0180611.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4N51.2e-1284.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664350 PE=4 SV=1[more]
BLAST of Cmc07g0180611.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc07g0180611Cmc07g0180611gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0180611.1-exonCmc07g0180611.1-exon-CMiso1.1chr07:244427..246485exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0180611.1-five_prime_utrCmc07g0180611.1-five_prime_utr-CMiso1.1chr07:244427..245114five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0180611.1-cdsCmc07g0180611.1-cds-CMiso1.1chr07:245115..245414CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0180611.1-three_prime_utrCmc07g0180611.1-three_prime_utr-CMiso1.1chr07:245415..246485three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc07g0180611.1Cmc07g0180611.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane