Cmc06g0179091.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc06g0179091.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	ELL-associated factor 1-like
Location	CMiso1.1chr06: 35430114 .. 35430651 (+)
Sequence length	538
RNA-Seq Expression	Cmc06g0179091.1
Synteny	Cmc06g0179091.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAAAGAAACAAAGAGGGAAAAAAAATGGCAGAGAAGAAATCGCCAATGGCTTCCCGGCTGAAGAAAGCATTGATAAAACTCACGGCAGTTGTCCGTCTCTGTCTCGTTCCCCGGCGACGATCACAACGGCTCGGATCATTCGATTCCGACGATCGAAAAGTAGGTATACGGATTGTGTTAGAAGATCAGAGTAGAATCGCTGAGAATTCTTTTGCGAGAAAGCTTGAGCGTGCTTCCAGTTCAAGATACGGAGGCTATGAAGAAGATGTCGATCAACGAGCGGAGATTTTCATCGAGAATTTCCGGCGTCAATTGAGGTTAGAACGACAGATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGTATGAACAGATATCTCCCCCGTCGATTTCGTGATATATATATTTTTTATGAAATTGAAATGAATTTGTTTTTGTGTTGTTGAGTACTGTAATTAAATTTCTTTCCTAGTTATTGTCTTCTCTTGGAAATGGAAATGGAAATTTCTTATAAATCGTTC

mRNA sequence

CTCAAAAGAAACAAAGAGGGAAAAAAAATGGCAGAGAAGAAATCGCCAATGGCTTCCCGGCTGAAGAAAGCATTGATAAAACTCACGGCAGTTGTCCGTCTCTGTCTCGTTCCCCGGCGACGATCACAACGGCTCGGATCATTCGATTCCGACGATCGAAAAGTAGGTATACGGATTGTGTTAGAAGATCAGAGTAGAATCGCTGAGAATTCTTTTGCGAGAAAGCTTGAGCGTGCTTCCAGTTCAAGATACGGAGGCTATGAAGAAGATGTCGATCAACGAGCGGAGATTTTCATCGAGAATTTCCGGCGTCAATTGAGGTTAGAACGACAGATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGTATGAACAGATATCTCCCCCGTCGATTTCGTGATATATATATTTTTTATGAAATTGAAATGAATTTGTTTTTGTGTTGTTGAGTACTGTAATTAAATTTCTTTCCTAGTTATTGTCTTCTCTTGGAAATGGAAATGGAAATTTCTTATAAATCGTTC

Coding sequence (CDS)

ATGGCAGAGAAGAAATCGCCAATGGCTTCCCGGCTGAAGAAAGCATTGATAAAACTCACGGCAGTTGTCCGTCTCTGTCTCGTTCCCCGGCGACGATCACAACGGCTCGGATCATTCGATTCCGACGATCGAAAAGTAGGTATACGGATTGTGTTAGAAGATCAGAGTAGAATCGCTGAGAATTCTTTTGCGAGAAAGCTTGAGCGTGCTTCCAGTTCAAGATACGGAGGCTATGAAGAAGATGTCGATCAACGAGCGGAGATTTTCATCGAGAATTTCCGGCGTCAATTGAGGTTAGAACGACAGATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGTATGAACAGATATCTCCCCCGTCGATTTCGTGA

Protein sequence

MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPPSIS

Homology

[Close]

BLAST of Cmc06g0179091.1 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-59
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60
           MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120
           NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE
Sbjct: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120

Query: 121 QISPPSIS 129
           QISPPSIS
Sbjct: 121 QISPPSIS 128

[Close]

BLAST of Cmc06g0179091.1 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-47
Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 8   MASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDS-DDRKVGIRIVLEDQSRIAENSFARK 67
           MASRL+KAL+KL AV+RLCL+PR+RS+RLGSFDS DD+KVGIRIVLEDQSRIAE+SF RK
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 68  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPPS 127
           LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQ SP S
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSPSS 120

Query: 128 IS 129
           I+
Sbjct: 121 IT 122

[Close]

BLAST of Cmc06g0179091.1 vs. NCBI nr
Match: KAE8650012.1 (hypothetical protein Csa_009473 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-41
Identity = 97/108 (89.81%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDS-DDRKVGIRIVLEDQSRIA 60
           MAEKKSPMASRL+KAL+KL AV+RLCL+PR+RS+RLGSFDS DD+KVGIRIVLEDQSRIA
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQL 108
           E+SF RKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQL
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQL 108

[Close]

BLAST of Cmc06g0179091.1 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 3.9e-31
Identity = 81/125 (64.80%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60
           MA+KKSP+  RLKK+ IKLTA +RLC+  R+ S+RL SF SDDR  G+R  LED+ RI E
Sbjct: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDE-RIVE 60

Query: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120
           N   RKLERASS+ Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY RVNS ETE E
Sbjct: 61  NRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESE 120

Query: 121 QISPP 126
           + SPP
Sbjct: 121 EKSPP 124

[Close]

BLAST of Cmc06g0179091.1 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 4.7e-29
Identity = 81/129 (62.79%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MAEKKSPMASRLKKALIKLTAVVR----LCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQS 60
           MAEKKSP+  RLKKA+ K+TA++R    LCL  RR S RL SF   DR VG+R  LED+ 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDE- 60

Query: 61  RIAENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYE 120
            I EN   R+LERASS RYG  E+DVD+R++IFI+NF R+LRLERQISLQLRYYR+NS  
Sbjct: 61  EIGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120

Query: 121 TEYEQISPP 126
           TE E+ SPP
Sbjct: 121 TEDEERSPP 128

[Close]

BLAST of Cmc06g0179091.1 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.6e-60
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60
           MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120
           NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE
Sbjct: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120

Query: 121 QISPPSIS 129
           QISPPSIS
Sbjct: 121 QISPPSIS 128

[Close]

BLAST of Cmc06g0179091.1 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.3e-52
Identity = 115/129 (89.15%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDS-DDRKVGIRIVLEDQSRIA 60
           MAEKKSPMASRL+KAL+KL AV+RLCL+PR+RS+RLGSFDS DD+KVGIRIVLEDQSRIA
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120
           E+SF RKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EQISPPSIS 129
           EQ SP SI+
Sbjct: 121 EQRSPSSIT 129

[Close]

BLAST of Cmc06g0179091.1 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29
Identity = 81/129 (62.79%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MAEKKSPMASRLKKALIKLTAVVR----LCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQS 60
           MAEKKSP+  RLKKA+ K+TA++R    LCL  RR S RL SF   DR VG+R  LED+ 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDE- 60

Query: 61  RIAENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYE 120
            I EN   R+LERASS RYG  E+DVD+R++IFI+NF R+LRLERQISLQLRYYR+NS  
Sbjct: 61  EIGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120

Query: 121 TEYEQISPP 126
           TE E+ SPP
Sbjct: 121 TEDEERSPP 128

[Close]

BLAST of Cmc06g0179091.1 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 65/123 (52.85%), Postives = 80/123 (65.04%), Query Frame = 0


Query: 8   MASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAENSFARKL 67
           MA RL++ L KL A +RLCL+ RRRS                 +   ++ + ++  AR L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRS-----------------IYRTRNVLEDDQTARNL 60

Query: 68  ERASSSRYGG---YEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRV--NSYETEYEQI 126
           ER SSSRY     +E+DVD RAEIFIENFRRQLRLERQISLQLR Y V  NS+ET+YE+I
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEI 106

[Close]

BLAST of Cmc06g0179091.1 vs. ExPASy TrEMBL
Match: A0A1R3J730 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 1   MAEKKSPMASRLKKALIKLTAVV-------RLCLVPRRRSQRLGSFDSDDRKVGIRIVLE 60
           M  +   + SR KKA+ KL +++       RL    RR S R     S + ++G+   LE
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFNDRLGLHSFLE 60

Query: 61  DQSRIAENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVN 119
           D+     +S  R L+R  S  YG  ++DVD+RAEIFI NFRRQL LERQ+SL+LRY R  
Sbjct: 61  DEETNGRSS-VRALQRVRS--YGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTT 120

[Close]

BLAST of Cmc06g0179091.1 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-05
Identity = 41/131 (31.30%), Postives = 64/131 (48.85%), Query Frame = 0


Query: 4   KKSPMASRLKKALIKLTAVVRL------CLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSR 63
           K   + +RL++A+ K+  V+         LVP      LGS  S      +R+   D+  
Sbjct: 5   KDGSLLNRLRQAVNKVKFVLSFKINSLWGLVP-----MLGSSSSSS---SLRLSFNDRPG 64

Query: 64  IAENSFARKLERASSSRYGGY---------EEDVDQRAEIFIENFRRQLRLERQISLQLR 120
           +       + +   SSR   Y         +ED+D +AE+FI NF RQL++ERQISL+L+
Sbjct: 65  LTAAFTENEPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELK 124

The following BLAST results are available for this feature:

BLAST of Cmc06g0179091.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052985.1	1.2e-59	100.00	hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144...	[more]
XP_011652707.1	1.0e-47	88.52	uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
KAE8650012.1	4.1e-41	89.81	hypothetical protein Csa_009473 [Cucumis sativus]	[more]
KAG6596691.1	3.9e-31	64.80	hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145292.1	4.7e-29	62.79	uncharacterized protein LOC111014780 [Momordica charantia]	[more]

BLAST of Cmc06g0179091.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc06g0179091.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHZ5	5.6e-60	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L4Z8	7.3e-52	89.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
A0A6J1CW64	2.3e-29	62.79	uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0L6A3	1.5e-17	52.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1	[more]
A0A1R3J730	2.4e-10	42.40	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1	[more]

BLAST of Cmc06g0179091.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57510.1	3.9e-05	31.30	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 79..109 e-value: 2.0E-10 score: 40.1
None	No IPR available	PANTHER	PTHR33098:SF64	OS08G0448100 PROTEIN	coord: 6..118
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 6..118

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc06g0179091	Cmc06g0179091	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc06g0179091.1-exon	Cmc06g0179091.1-exon-CMiso1.1chr06:35430114..35430651	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc06g0179091.1-five_prime_utr	Cmc06g0179091.1-five_prime_utr-CMiso1.1chr06:35430114..35430140	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc06g0179091.1-cds	Cmc06g0179091.1-cds-CMiso1.1chr06:35430141..35430527	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc06g0179091.1-three_prime_utr	Cmc06g0179091.1-three_prime_utr-CMiso1.1chr06:35430528..35430651	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc06g0179091.1	Cmc06g0179091.1-protein	polypeptide