Cmc06g0166331.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc06g0166331.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr06: 18715987 .. 18716625 (+)
Sequence length	639
RNA-Seq Expression	Cmc06g0166331.1
Synteny	Cmc06g0166331.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAAGCTTGGGGAGTGGAAGACGAAGGTTTCCTCGTTGAATGTCGAGCAGTAGAACTTGCGACTCCGGCTAATAACGATTGCTATATGGCACACATGGAGATTGAGGCCGACAGCTACTTGAGCACAGTGTTGAAACAATTTGAGGATGTGTTCGAATGGCCAGAAAAACTTCCTCCTAGAAGGGAAATAGAGCATCAGATACACTTGAAGCAAGGAACCGATCCTATAAACATGAGACCTTATCGTTATGGGTTTCAACAGAAGGAAGAAATAGAAAAACTAGTCAAGGAAATGTTGGAATCAGGAGTTATAAGGCCCAGCATCAGCCCTTTCTCTAGTCCTGTTTTACTGGTGAAGAAAAAAGATGTAAGTTGGCGTTTTTGTGTGGATTACAGGGCTGTGAATAATGCAACGATTCCAGATAAATTTCCAATCCCAGTAGTTGAGGAATTATTTGATGAATTAAGTGGAGCGGCTGTGTTCTCCAAAATTGACTTGAAGTCAGGGTATCACCAAATTAGAATGGTGGATGAAGATATTGAAAAAATGGCTTTTAGAACTCACGATGGTCATTATGAGTTCTTAGTTATGCCCTTTGGGTTGACTAACGCACCAGCACTTTTCAAGCGTTGA

mRNA sequence

ATGATCAAAGCTTGGGGAGTGGAAGACGAAGGTTTCCTCGTTGAATGTCGAGCAGTAGAACTTGCGACTCCGGCTAATAACGATTGCTATATGGCACACATGGAGATTGAGGCCGACAGCTACTTGAGCACAGTGTTGAAACAATTTGAGGATGTGTTCGAATGGCCAGAAAAACTTCCTCCTAGAAGGGAAATAGAGCATCAGATACACTTGAAGCAAGGAACCGATCCTATAAACATGAGACCTTATCGTTATGGGTTTCAACAGAAGGAAGAAATAGAAAAACTAGTCAAGGAAATGTTGGAATCAGGAGTTATAAGGCCCAGCATCAGCCCTTTCTCTAGTCCTGTTTTACTGGTGAAGAAAAAAGATGTAAGTTGGCGTTTTTGTGTGGATTACAGGGCTGTGAATAATGCAACGATTCCAGATAAATTTCCAATCCCAGTAGTTGAGGAATTATTTGATGAATTAAGTGGAGCGGCTGTGTTCTCCAAAATTGACTTGAAGTCAGGGTATCACCAAATTAGAATGGTGGATGAAGATATTGAAAAAATGGCTTTTAGAACTCACGATGGTCATTATGAGTTCTTAGTTATGCCCTTTGGGTTGACTAACGCACCAGCACTTTTCAAGCGTTGA

Coding sequence (CDS)

ATGATCAAAGCTTGGGGAGTGGAAGACGAAGGTTTCCTCGTTGAATGTCGAGCAGTAGAACTTGCGACTCCGGCTAATAACGATTGCTATATGGCACACATGGAGATTGAGGCCGACAGCTACTTGAGCACAGTGTTGAAACAATTTGAGGATGTGTTCGAATGGCCAGAAAAACTTCCTCCTAGAAGGGAAATAGAGCATCAGATACACTTGAAGCAAGGAACCGATCCTATAAACATGAGACCTTATCGTTATGGGTTTCAACAGAAGGAAGAAATAGAAAAACTAGTCAAGGAAATGTTGGAATCAGGAGTTATAAGGCCCAGCATCAGCCCTTTCTCTAGTCCTGTTTTACTGGTGAAGAAAAAAGATGTAAGTTGGCGTTTTTGTGTGGATTACAGGGCTGTGAATAATGCAACGATTCCAGATAAATTTCCAATCCCAGTAGTTGAGGAATTATTTGATGAATTAAGTGGAGCGGCTGTGTTCTCCAAAATTGACTTGAAGTCAGGGTATCACCAAATTAGAATGGTGGATGAAGATATTGAAAAAATGGCTTTTAGAACTCACGATGGTCATTATGAGTTCTTAGTTATGCCCTTTGGGTTGACTAACGCACCAGCACTTTTCAAGCGTTGA

Protein sequence

MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLPPRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLVKKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDEDIEKMAFRTHDGHYEFLVMPFGLTNAPALFKR

Homology

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BLAST of Cmc06g0166331.1 vs. NCBI nr
Match: KAA0048503.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28294.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.1 bits (1089), Expect = 7.1e-115
Identity = 205/212 (96.70%), Postives = 205/212 (96.70%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MIKAWGVEDEGFLVECRAVEL TPANNDCYMAHMEIEADS LSTVLKQFEDVFEWPEKLP
Sbjct: 320 MIKAWGVEDEGFLVECRAVELVTPANNDCYMAHMEIEADSSLSTVLKQFEDVFEWPEKLP 379

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRREIEHQIHLKQGTDPINMRPYRYGFQ KEEIEKLVKEMLES VIRPSIS FSSPVLLV
Sbjct: 380 PRREIEHQIHLKQGTDPINMRPYRYGFQHKEEIEKLVKEMLESEVIRPSISHFSSPVLLV 439

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE
Sbjct: 440 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 499

Query: 181 DIEKMAFRTHDGHYEFLVMPFGLTNAPALFKR 213
           DIEK AFRTHDGHYEFLVMPFGLTN PALFKR
Sbjct: 500 DIEKTAFRTHDGHYEFLVMPFGLTNVPALFKR 531

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BLAST of Cmc06g0166331.1 vs. NCBI nr
Match: TYK14999.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 389.4 bits (999), Expect = 2.0e-104
Identity = 188/211 (89.10%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MI+AWG+EDEGFLVECRA+EL   ANND    HMEIE DS LSTVLKQF+DVFEWPEKLP
Sbjct: 297 MIRAWGMEDEGFLVECRAIEL---ANNDYCKIHMEIEVDSALSTVLKQFQDVFEWPEKLP 356

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRR+IEHQIHLKQGTDPIN+RPYRYGFQQKEE+EKLVKEMLESGVIRPSISPFSSPVLLV
Sbjct: 357 PRRKIEHQIHLKQGTDPINVRPYRYGFQQKEEMEKLVKEMLESGVIRPSISPFSSPVLLV 416

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKD SWRFCVDYRAVNNATIPDKFP PVVEELFDELSGA VFSKIDLKSGYHQIRMVDE
Sbjct: 417 KKKDESWRFCVDYRAVNNATIPDKFPTPVVEELFDELSGAVVFSKIDLKSGYHQIRMVDE 476

Query: 181 DIEKMAFRTHDGHYEFLVMPFGLTNAPALFK 212
           DIEK AFRTH+GHYEFLVMPFGLTNAPA F+
Sbjct: 477 DIEKTAFRTHEGHYEFLVMPFGLTNAPATFQ 504

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BLAST of Cmc06g0166331.1 vs. NCBI nr
Match: KAA0041314.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 383.6 bits (984), Expect = 1.1e-102
Identity = 184/211 (87.20%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MIKAW   DEGFL+ECRAVE+ TP++NDCYMA+MEIE DS +STVLKQFEDVFEW EKLP
Sbjct: 336 MIKAWEERDEGFLIECRAVEVVTPSDNDCYMANMEIEVDSTISTVLKQFEDVFEWLEKLP 395

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRREIEHQI+LKQGTDPIN+RPYRYGFQQ EE+EKLVKEML SGVIRPS S FSSPVLLV
Sbjct: 396 PRREIEHQIYLKQGTDPINVRPYRYGFQQNEEMEKLVKEMLGSGVIRPSTSSFSSPVLLV 455

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKD SWRFCVDYRAVNNATI DKFPIPVVEELFDEL GAAVFSKIDLKSGYHQIRMVDE
Sbjct: 456 KKKDGSWRFCVDYRAVNNATILDKFPIPVVEELFDELGGAAVFSKIDLKSGYHQIRMVDE 515

Query: 181 DIEKMAFRTHDGHYEFLVMPFGLTNAPALFK 212
           DIEK AFRTH+GHYEFLVMPFGLTNAPA F+
Sbjct: 516 DIEKTAFRTHEGHYEFLVMPFGLTNAPATFQ 546

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BLAST of Cmc06g0166331.1 vs. NCBI nr
Match: KAA0064684.1 (tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa])

HSP 1 Score: 376.7 bits (966), Expect = 1.3e-100
Identity = 183/211 (86.73%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MIKAWG+EDEGFLVECRA+EL    NND   AHMEIE DS LSTVLKQFEDVFEWPEKLP
Sbjct: 373 MIKAWGMEDEGFLVECRAIEL---TNNDYCNAHMEIEVDSTLSTVLKQFEDVFEWPEKLP 432

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRR+IEHQIHLKQG DPIN+RPYRY FQQKEE+EKLVKEMLESGVIRP+ISPFSSPVLLV
Sbjct: 433 PRRKIEHQIHLKQGIDPINVRPYRYRFQQKEEMEKLVKEMLESGVIRPNISPFSSPVLLV 492

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKD SW FCVDYRAVNNATIPDKFP PVVEELFDELSGAAVFSKIDLK  YHQIRMV++
Sbjct: 493 KKKDGSWHFCVDYRAVNNATIPDKFPFPVVEELFDELSGAAVFSKIDLKPRYHQIRMVEK 552

Query: 181 DIEKMAFRTHDGHYEFLVMPFGLTNAPALFK 212
           DIEK AFRTH+GHYEFLVMPFGLTNAPA F+
Sbjct: 553 DIEKTAFRTHEGHYEFLVMPFGLTNAPATFQ 580

[Close]

BLAST of Cmc06g0166331.1 vs. NCBI nr
Match: TYK02775.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 367.9 bits (943), Expect = 6.1e-98
Identity = 177/202 (87.62%), Postives = 187/202 (92.57%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MIKAW   DEGFL+ECRAVE+ TP++NDCYMA+MEIE DS LSTVLKQFEDVFEW EKLP
Sbjct: 444 MIKAWEERDEGFLIECRAVEVVTPSDNDCYMANMEIEVDSTLSTVLKQFEDVFEWLEKLP 503

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRREIEHQI+LKQGTDPIN+RPYRYGFQQKEE+EKLVKEML SGVI PS S FSSPVLLV
Sbjct: 504 PRREIEHQIYLKQGTDPINVRPYRYGFQQKEEMEKLVKEMLGSGVISPSTSSFSSPVLLV 563

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKD SWRFCVDY+AVNNATI DKFPIPVVEELFDEL GAAVFSKIDLKSGYHQIRMVDE
Sbjct: 564 KKKDGSWRFCVDYKAVNNATILDKFPIPVVEELFDELGGAAVFSKIDLKSGYHQIRMVDE 623

Query: 181 DIEKMAFRTHDGHYEFLVMPFG 203
           DIEK AFRTH+GHYEFLVMPFG
Sbjct: 624 DIEKTAFRTHEGHYEFLVMPFG 645

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BLAST of Cmc06g0166331.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-35
Identity = 74/160 (46.25%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 59  LPPRR------EIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISP 118
           LPPR        ++H I +K G     ++PY    + ++EI K+V+++L++  I PS SP
Sbjct: 572 LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 631

Query: 119 FSSPVLLVKKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGY 178
            SSPV+LV KKD ++R CVDYR +N ATI D FP+P ++ L   +  A +F+ +DL SGY
Sbjct: 632 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 691

Query: 179 HQIRMVDEDIEKMAFRTHDGHYEFLVMPFGLTNAPALFKR 213
           HQI M  +D  K AF T  G YE+ VMPFGL NAP+ F R
Sbjct: 692 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 731

[Close]

BLAST of Cmc06g0166331.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-35
Identity = 74/160 (46.25%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 59  LPPRR------EIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISP 118
           LPPR        ++H I +K G     ++PY    + ++EI K+V+++L++  I PS SP
Sbjct: 598 LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 657

Query: 119 FSSPVLLVKKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGY 178
            SSPV+LV KKD ++R CVDYR +N ATI D FP+P ++ L   +  A +F+ +DL SGY
Sbjct: 658 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 717

Query: 179 HQIRMVDEDIEKMAFRTHDGHYEFLVMPFGLTNAPALFKR 213
           HQI M  +D  K AF T  G YE+ VMPFGL NAP+ F R
Sbjct: 718 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 757

[Close]

BLAST of Cmc06g0166331.1 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 71/177 (40.11%), Postives = 107/177 (60.45%), Query Frame = 0


Query: 42  LSTVLKQFEDVFEWP-EKLPPRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEM 101
           L+++L +F  +FE P   +     ++ +I      DPI  + Y Y    + E+E+ + E+
Sbjct: 88  LNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNT-QDPIYAKSYPYPVNMRGEVERQIDEL 147

Query: 102 LESGVIRPSISPFSSPVLLVKKK-----DVSWRFCVDYRAVNNATIPDKFPIPVVEELFD 161
           L+ G+IRPS SP++SP+ +V KK     +  +R  VD++ +N  TIPD +PIP +     
Sbjct: 148 LQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLA 207

Query: 162 ELSGAAVFSKIDLKSGYHQIRMVDEDIEKMAFRTHDGHYEFLVMPFGLTNAPALFKR 213
            L  A  F+ +DL SG+HQI M + DI K AF T +G YEFL +PFGL NAPA+F+R
Sbjct: 208 SLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQR 263

[Close]

BLAST of Cmc06g0166331.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.9e-32
Identity = 77/186 (41.40%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 33  HMEIEADSYLSTVLKQFEDV-FEWPEKLPPRREIEHQIHLKQGTDPINMRPYRYGFQQKE 92
           H+  E    L  +L +F ++ ++  EKL     I+H ++    + PI  + Y      + 
Sbjct: 162 HLNQEETFKLKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNS-PIYSKQYPLAQTHEI 221

Query: 93  EIEKLVKEMLESGVIRPSISPFSSPVLLV-KKKDVS----WRFCVDYRAVNNATIPDKFP 152
           E+E  V+EML  G+IR S SP++SP  +V KK D S    +R  +DYR +N  TIPD++P
Sbjct: 222 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 281

Query: 153 IPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDEDIEKMAFRTHDGHYEFLVMPFGLTNA 212
           IP ++E+  +L     F+ IDL  G+HQI M +E I K AF T  GHYE+L MPFGL NA
Sbjct: 282 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 341

[Close]

BLAST of Cmc06g0166331.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.7e-31
Identity = 74/193 (38.34%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 27  NDCY-MAHMEIEADSYLSTVLKQFEDV-FEWPEKLPPRREIEHQIHLKQGTDPINMRPYR 86
           +D Y + H+  E    L  +L+++ D+ +   +KL    + +H I+ K    P+  + Y 
Sbjct: 157 SDLYRLEHLNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHNL-PLYSK-YS 216

Query: 87  YGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV-KKKDVS----WRFCVDYRAVNNA 146
           Y    ++E+E  +++ML  G+IR S SP++SP+ +V KK+D S    +R  +DYR +N  
Sbjct: 217 YPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEI 276

Query: 147 TIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDEDIEKMAFRTHDGHYEFLVM 206
           T+ D+ PIP ++E+  +L     F+ IDL  G+HQI M  E + K AF T  GHYE+L M
Sbjct: 277 TVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRM 336

Query: 207 PFGLTNAPALFKR 213
           PFGL NAPA F+R
Sbjct: 337 PFGLKNAPATFQR 347

[Close]

BLAST of Cmc06g0166331.1 vs. ExPASy TrEMBL
Match: A0A5A7TXY1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001130 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.5e-115
Identity = 205/212 (96.70%), Postives = 205/212 (96.70%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MIKAWGVEDEGFLVECRAVEL TPANNDCYMAHMEIEADS LSTVLKQFEDVFEWPEKLP
Sbjct: 320 MIKAWGVEDEGFLVECRAVELVTPANNDCYMAHMEIEADSSLSTVLKQFEDVFEWPEKLP 379

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRREIEHQIHLKQGTDPINMRPYRYGFQ KEEIEKLVKEMLES VIRPSIS FSSPVLLV
Sbjct: 380 PRREIEHQIHLKQGTDPINMRPYRYGFQHKEEIEKLVKEMLESEVIRPSISHFSSPVLLV 439

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE
Sbjct: 440 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 499

Query: 181 DIEKMAFRTHDGHYEFLVMPFGLTNAPALFKR 213
           DIEK AFRTHDGHYEFLVMPFGLTN PALFKR
Sbjct: 500 DIEKTAFRTHDGHYEFLVMPFGLTNVPALFKR 531

[Close]

BLAST of Cmc06g0166331.1 vs. ExPASy TrEMBL
Match: A0A5D3CXQ2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00320 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 9.4e-105
Identity = 188/211 (89.10%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MI+AWG+EDEGFLVECRA+EL   ANND    HMEIE DS LSTVLKQF+DVFEWPEKLP
Sbjct: 297 MIRAWGMEDEGFLVECRAIEL---ANNDYCKIHMEIEVDSALSTVLKQFQDVFEWPEKLP 356

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRR+IEHQIHLKQGTDPIN+RPYRYGFQQKEE+EKLVKEMLESGVIRPSISPFSSPVLLV
Sbjct: 357 PRRKIEHQIHLKQGTDPINVRPYRYGFQQKEEMEKLVKEMLESGVIRPSISPFSSPVLLV 416

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKD SWRFCVDYRAVNNATIPDKFP PVVEELFDELSGA VFSKIDLKSGYHQIRMVDE
Sbjct: 417 KKKDESWRFCVDYRAVNNATIPDKFPTPVVEELFDELSGAVVFSKIDLKSGYHQIRMVDE 476

Query: 181 DIEKMAFRTHDGHYEFLVMPFGLTNAPALFK 212
           DIEK AFRTH+GHYEFLVMPFGLTNAPA F+
Sbjct: 477 DIEKTAFRTHEGHYEFLVMPFGLTNAPATFQ 504

[Close]

BLAST of Cmc06g0166331.1 vs. ExPASy TrEMBL
Match: A0A5A7TCX9 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003140 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.2e-103
Identity = 184/211 (87.20%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MIKAW   DEGFL+ECRAVE+ TP++NDCYMA+MEIE DS +STVLKQFEDVFEW EKLP
Sbjct: 336 MIKAWEERDEGFLIECRAVEVVTPSDNDCYMANMEIEVDSTISTVLKQFEDVFEWLEKLP 395

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRREIEHQI+LKQGTDPIN+RPYRYGFQQ EE+EKLVKEML SGVIRPS S FSSPVLLV
Sbjct: 396 PRREIEHQIYLKQGTDPINVRPYRYGFQQNEEMEKLVKEMLGSGVIRPSTSSFSSPVLLV 455

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKD SWRFCVDYRAVNNATI DKFPIPVVEELFDEL GAAVFSKIDLKSGYHQIRMVDE
Sbjct: 456 KKKDGSWRFCVDYRAVNNATILDKFPIPVVEELFDELGGAAVFSKIDLKSGYHQIRMVDE 515

Query: 181 DIEKMAFRTHDGHYEFLVMPFGLTNAPALFK 212
           DIEK AFRTH+GHYEFLVMPFGLTNAPA F+
Sbjct: 516 DIEKTAFRTHEGHYEFLVMPFGLTNAPATFQ 546

[Close]

BLAST of Cmc06g0166331.1 vs. ExPASy TrEMBL
Match: A0A5A7VBR1 (Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00180 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 6.3e-101
Identity = 183/211 (86.73%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MIKAWG+EDEGFLVECRA+EL    NND   AHMEIE DS LSTVLKQFEDVFEWPEKLP
Sbjct: 373 MIKAWGMEDEGFLVECRAIEL---TNNDYCNAHMEIEVDSTLSTVLKQFEDVFEWPEKLP 432

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRR+IEHQIHLKQG DPIN+RPYRY FQQKEE+EKLVKEMLESGVIRP+ISPFSSPVLLV
Sbjct: 433 PRRKIEHQIHLKQGIDPINVRPYRYRFQQKEEMEKLVKEMLESGVIRPNISPFSSPVLLV 492

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKD SW FCVDYRAVNNATIPDKFP PVVEELFDELSGAAVFSKIDLK  YHQIRMV++
Sbjct: 493 KKKDGSWHFCVDYRAVNNATIPDKFPFPVVEELFDELSGAAVFSKIDLKPRYHQIRMVEK 552

Query: 181 DIEKMAFRTHDGHYEFLVMPFGLTNAPALFK 212
           DIEK AFRTH+GHYEFLVMPFGLTNAPA F+
Sbjct: 553 DIEKTAFRTHEGHYEFLVMPFGLTNAPATFQ 580

[Close]

BLAST of Cmc06g0166331.1 vs. ExPASy TrEMBL
Match: A0A5D3BUJ8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00340 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.9e-98
Identity = 177/202 (87.62%), Postives = 187/202 (92.57%), Query Frame = 0


Query: 1   MIKAWGVEDEGFLVECRAVELATPANNDCYMAHMEIEADSYLSTVLKQFEDVFEWPEKLP 60
           MIKAW   DEGFL+ECRAVE+ TP++NDCYMA+MEIE DS LSTVLKQFEDVFEW EKLP
Sbjct: 444 MIKAWEERDEGFLIECRAVEVVTPSDNDCYMANMEIEVDSTLSTVLKQFEDVFEWLEKLP 503

Query: 61  PRREIEHQIHLKQGTDPINMRPYRYGFQQKEEIEKLVKEMLESGVIRPSISPFSSPVLLV 120
           PRREIEHQI+LKQGTDPIN+RPYRYGFQQKEE+EKLVKEML SGVI PS S FSSPVLLV
Sbjct: 504 PRREIEHQIYLKQGTDPINVRPYRYGFQQKEEMEKLVKEMLGSGVISPSTSSFSSPVLLV 563

Query: 121 KKKDVSWRFCVDYRAVNNATIPDKFPIPVVEELFDELSGAAVFSKIDLKSGYHQIRMVDE 180
           KKKD SWRFCVDY+AVNNATI DKFPIPVVEELFDEL GAAVFSKIDLKSGYHQIRMVDE
Sbjct: 564 KKKDGSWRFCVDYKAVNNATILDKFPIPVVEELFDELGGAAVFSKIDLKSGYHQIRMVDE 623

Query: 181 DIEKMAFRTHDGHYEFLVMPFG 203
           DIEK AFRTH+GHYEFLVMPFG
Sbjct: 624 DIEKTAFRTHEGHYEFLVMPFG 645

[Close]

BLAST of Cmc06g0166331.1 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 9.9e-06
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 89  QKEEIEKLVKEMLESGVIRPSISPFSSPVLLVKKKDVSW 128
           ++  ++  + EMLE+ +I+PSISP+SSPVLLV+KKD  W
Sbjct: 41  RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Cmc06g0166331.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048503.1	7.1e-115	96.70	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28294.1 Ty3/gyp...	[more]
TYK14999.1	2.0e-104	89.10	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041314.1	1.1e-102	87.20	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0064684.1	1.3e-100	86.73	tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tet...	[more]
TYK02775.1	6.1e-98	87.62	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0166331.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.6e-35	46.25	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.6e-35	46.25	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	2.7e-32	40.11	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	7.9e-32	41.40	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	6.7e-31	38.34	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc06g0166331.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXY1	3.5e-115	96.70	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CXQ2	9.4e-105	89.10	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TCX9	5.2e-103	87.20	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7VBR1	6.3e-101	86.73	Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BUJ8	2.9e-98	87.62	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Cmc06g0166331.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	9.9e-06	53.85	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 120..211 e-value: 2.4E-10 score: 40.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 145..212 e-value: 3.6E-62 score: 211.4
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 65..205 e-value: 3.6E-62 score: 211.4
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 41..210
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 41..210
None	No IPR available	CDD	cd01647	RT_LTR	coord: 104..212 e-value: 2.03111E-57 score: 177.402
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 46..212

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc06g0166331	Cmc06g0166331	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc06g0166331.1-exon	Cmc06g0166331.1-exon-CMiso1.1chr06:18715987..18716625	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc06g0166331.1-cds	Cmc06g0166331.1-cds-CMiso1.1chr06:18715987..18716625	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc06g0166331.1	Cmc06g0166331.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity