Cmc06g0164701.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc06g0164701.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr06: 15501055 .. 15501630 (-)
Sequence length	576
RNA-Seq Expression	Cmc06g0164701.1
Synteny	Cmc06g0164701.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCAAAAGCGCCTTTGTAAACGGTTACTTGAATGAGGAATTCTTTGTAGTTCAACCAAAAGAAGTTGTTAATTCTGAATTCCCTCGGCATGTTTACAAGCTCAATAAAGCTCTGTATGGGTTAAAGCAAGCTCCTCGAGCTTGGTATGAGCGCTTAACAATCTATCTGGGTGATAAAGGATACTCTAGAGGTGGAACTGATAAGACATTATTTATTAATAGAACCAGCAGCGAGCTCATTGTAGCACAAATTTATGTTGATGATATTATATTTGGGGGGTTTCCTAAGGCACTCGTTGATAACTTCATTAACATAATGAAATCAGAATTTGAAATGAGCATGGTAGGAGAACTTTCTTGTTTTCTAGGTCTAGAGATCAAACAAAGAAGTGAGGGTATATTTATATCTCAAGAGAAGTACGCCAAGAACTTAGTCAAAAAATTTGGCCTGGATCAGTGTCAATATAAAAGGACTCCAGCGGCGACACATGTTAAAGTTACTAAAGACATTAATGGTACAGTAGTAGAACACAAACTGTACAGGAGCATGGTTGGGAGTCTTCTATATTAA

mRNA sequence

ATGGATGTCAAAAGCGCCTTTGTAAACGGTTACTTGAATGAGGAATTCTTTGTAGTTCAACCAAAAGAAGTTGTTAATTCTGAATTCCCTCGGCATGTTTACAAGCTCAATAAAGCTCTGTATGGGTTAAAGCAAGCTCCTCGAGCTTGGTATGAGCGCTTAACAATCTATCTGGGTGATAAAGGATACTCTAGAGGTGGAACTGATAAGACATTATTTATTAATAGAACCAGCAGCGAGCTCATTGTAGCACAAATTTATGTTGATGATATTATATTTGGGGGGTTTCCTAAGGCACTCGTTGATAACTTCATTAACATAATGAAATCAGAATTTGAAATGAGCATGGTAGGAGAACTTTCTTGTTTTCTAGGTCTAGAGATCAAACAAAGAAGTGAGGGTATATTTATATCTCAAGAGAAGTACGCCAAGAACTTAGTCAAAAAATTTGGCCTGGATCAGTGTCAATATAAAAGGACTCCAGCGGCGACACATGTTAAAGTTACTAAAGACATTAATGGTACAGTAGTAGAACACAAACTGTACAGGAGCATGGTTGGGAGTCTTCTATATTAA

Coding sequence (CDS)

ATGGATGTCAAAAGCGCCTTTGTAAACGGTTACTTGAATGAGGAATTCTTTGTAGTTCAACCAAAAGAAGTTGTTAATTCTGAATTCCCTCGGCATGTTTACAAGCTCAATAAAGCTCTGTATGGGTTAAAGCAAGCTCCTCGAGCTTGGTATGAGCGCTTAACAATCTATCTGGGTGATAAAGGATACTCTAGAGGTGGAACTGATAAGACATTATTTATTAATAGAACCAGCAGCGAGCTCATTGTAGCACAAATTTATGTTGATGATATTATATTTGGGGGGTTTCCTAAGGCACTCGTTGATAACTTCATTAACATAATGAAATCAGAATTTGAAATGAGCATGGTAGGAGAACTTTCTTGTTTTCTAGGTCTAGAGATCAAACAAAGAAGTGAGGGTATATTTATATCTCAAGAGAAGTACGCCAAGAACTTAGTCAAAAAATTTGGCCTGGATCAGTGTCAATATAAAAGGACTCCAGCGGCGACACATGTTAAAGTTACTAAAGACATTAATGGTACAGTAGTAGAACACAAACTGTACAGGAGCATGGTTGGGAGTCTTCTATATTAA

Protein sequence

MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGDKGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGELSCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHKLYRSMVGSLLY

Homology

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BLAST of Cmc06g0164701.1 vs. NCBI nr
Match: TYK29824.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 7.2e-90
Identity = 168/191 (87.96%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           MDVKSAF+NGYLNEE FV QPK  V+SEFP+HVYKLNKALYGLKQAPRAWY+RLTIYLGD
Sbjct: 410 MDVKSAFLNGYLNEEVFVAQPKGFVDSEFPQHVYKLNKALYGLKQAPRAWYKRLTIYLGD 469

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           KGYSR GT KTLFINRTSSELI+AQIYVDDIIFGGFPKA + NFINIMKSEFEMSMVGEL
Sbjct: 470 KGYSRSGTSKTLFINRTSSELIIAQIYVDDIIFGGFPKAFIGNFINIMKSEFEMSMVGEL 529

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           SCFLGL+IKQRS  IFISQEKY KNLVKKFGLDQCQ+KRT  ATHVKVTKDINGTVV+HK
Sbjct: 530 SCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHK 589

Query: 181 LYRSMVGSLLY 192
           LYRS+VGSLLY
Sbjct: 590 LYRSLVGSLLY 598

[Close]

BLAST of Cmc06g0164701.1 vs. NCBI nr
Match: KAA0035790.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 169/191 (88.48%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           MDVKSAF+NGYLNEE FV QPK  V+SEFP HVYKLNKALYGLKQAPRAWYERLTIYLGD
Sbjct: 162 MDVKSAFLNGYLNEEVFVAQPKGFVDSEFPHHVYKLNKALYGLKQAPRAWYERLTIYLGD 221

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           KGYSR GT KTLFINRTSSELI+AQIYVDDIIFG FPKAL+ NFINIMKSEFEMSMVGEL
Sbjct: 222 KGYSRNGTSKTLFINRTSSELIIAQIYVDDIIFGVFPKALIGNFINIMKSEFEMSMVGEL 281

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           SCFLGL+IKQRS  IFISQEKY KNLVKKFGLDQCQ+KRT  ATHVKVTKDINGTVV+HK
Sbjct: 282 SCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHK 341

Query: 181 LYRSMVGSLLY 192
           LYRS+VGSLLY
Sbjct: 342 LYRSLVGSLLY 350

[Close]

BLAST of Cmc06g0164701.1 vs. NCBI nr
Match: KAA0054435.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 323.9 bits (829), Expect = 9.1e-85
Identity = 157/191 (82.20%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           M VKSAF+NGYLNEE +V QPK  V+ EFP++VYKLNKALY LKQAP+AWYERLT+YLG+
Sbjct: 758 MHVKSAFLNGYLNEEVYVTQPKGFVDPEFPQYVYKLNKALYRLKQAPQAWYERLTMYLGE 817

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           + YSRG TDKTLFINRTS+ LIVAQIYVDDIIFGGFPK LVDNFINIMKSEFEMS+VGEL
Sbjct: 818 RVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGEL 877

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           SCFLGL+IKQRSEG+FISQEKYAKNLVKKFGLDQ Q+KRTPA TH K+TKD+ GT V+HK
Sbjct: 878 SCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAKITKDMVGTEVDHK 937

Query: 181 LYRSMVGSLLY 192
           LYRSM+GSLLY
Sbjct: 938 LYRSMIGSLLY 948

[Close]

BLAST of Cmc06g0164701.1 vs. NCBI nr
Match: KAA0054623.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 322.4 bits (825), Expect = 2.6e-84
Identity = 154/191 (80.63%), Postives = 173/191 (90.58%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           MDVKSAF+NGYLNEE +V QPK  ++SEFP  +YKLNKALYGLKQAP  WYE+LT+YLG+
Sbjct: 507 MDVKSAFLNGYLNEEVYVAQPKRFIDSEFPHKLYKLNKALYGLKQAPLTWYEQLTMYLGE 566

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           +GYSRG TDKTL INRTS++LIVAQIYVDDIIFGGFPK LV+NFINIM SEFEMS+VGEL
Sbjct: 567 RGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMTSEFEMSLVGEL 626

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           SCFLGL+IKQRSEG+F+SQEKYAKNLVKKFGLDQ QYKRTPAATH K+TKD  GT V+HK
Sbjct: 627 SCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGTAVDHK 686

Query: 181 LYRSMVGSLLY 192
           LYRSM+GS LY
Sbjct: 687 LYRSMIGSHLY 697

[Close]

BLAST of Cmc06g0164701.1 vs. NCBI nr
Match: TYJ98295.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 153/191 (80.10%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           MDVKSAF+NGYLNEE +V QPK  ++SEFP++VYK+NKALYGLKQAPRAWYERL IYL +
Sbjct: 533 MDVKSAFLNGYLNEEVYVAQPKGFIDSEFPQYVYKINKALYGLKQAPRAWYERLIIYLDE 592

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           +GYS+G TDKTLFINRTS++LIVAQIYVDDIIFGGFPK LV+NFINI+KSEFE+S+VG+L
Sbjct: 593 RGYSKGETDKTLFINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIIKSEFEISLVGKL 652

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           S FLGL+IKQRS+G+FISQEKYAKNLVKKFGLDQ QYKRT AATHVK+TKD  GT ++HK
Sbjct: 653 SYFLGLQIKQRSKGMFISQEKYAKNLVKKFGLDQSQYKRTLAATHVKITKDTVGTAIDHK 712

Query: 181 LYRSMVGSLLY 192
           LYRSM+GSLLY
Sbjct: 713 LYRSMIGSLLY 723

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.1e-28
Identity = 66/191 (34.55%), Postives = 107/191 (56.02%), Query Frame = 0


Query: 1    MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
            +DV +AF+ G L +E ++ QP   V+ + P +V +L KA+YGLKQAPRAWY  L  YL  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
             G+    +D +LF+ +    +I   +YVDDI+  G    L+ + ++ +   F +    +L
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
              FLG+E K+  +G+ +SQ +Y  +L+ +  +   +   TP AT  K+T      + +  
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPT 1226

Query: 181  LYRSMVGSLLY 192
             YR +VGSL Y
Sbjct: 1227 EYRGIVGSLQY 1237

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.3e-27
Identity = 65/191 (34.03%), Postives = 105/191 (54.97%), Query Frame = 0


Query: 1    MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
            +DV +AF+ G L ++ ++ QP   ++ + P +V KL KALYGLKQAPRAWY  L  YL  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
             G+    +D +LF+ +    ++   +YVDDI+  G    L+ N ++ +   F +    EL
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
              FLG+E K+   G+ +SQ +Y  +L+ +  +   +   TP A   K++      + +  
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPT 1243

Query: 181  LYRSMVGSLLY 192
             YR +VGSL Y
Sbjct: 1244 EYRGIVGSLQY 1254

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 69/200 (34.50%), Postives = 114/200 (57.00%), Query Frame = 0


Query: 1    MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
            +DVK+AF++G L EE ++ QP+    +     V KLNK+LYGLKQAPR WY +   ++  
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGYSRGGTDKTLFINRTS-SELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGE 120
            + Y +  +D  ++  R S +  I+  +YVDD++  G  K L+      +   F+M  +G 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  LSCFLGLEI--KQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVV 180
                LG++I  ++ S  +++SQEKY + ++++F +   +   TP A H+K++K +  T V
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTV 1100

Query: 181  EHK------LYRSMVGSLLY 192
            E K       Y S VGSL+Y
Sbjct: 1101 EEKGNMAKVPYSSAVGSLMY 1120

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-23
Identity = 62/194 (31.96%), Postives = 107/194 (55.15%), Query Frame = 0


Query: 1    MDVKSAFVNGYLNEEFFVVQPKEV-VNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLG 60
            MDVK+AF+NG L EE ++  P+ +  NS+   +V KLNKA+YGLKQA R W+E     L 
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISCNSD---NVCKLNKAIYGLKQAARCWFEVFEQALK 1060

Query: 61   DKGYSRGGTDKTLFI--NRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMV 120
            +  +     D+ ++I      +E I   +YVDD++        ++NF   +  +F M+ +
Sbjct: 1061 ECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDL 1120

Query: 121  GELSCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVV 180
             E+  F+G+ I+ + + I++SQ  Y K ++ KF ++ C    TP  + +   + +N    
Sbjct: 1121 NEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINY-ELLNSDED 1180

Query: 181  EHKLYRSMVGSLLY 192
             +   RS++G L+Y
Sbjct: 1181 CNTPCRSLIGCLMY 1190

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-18
Identity = 57/192 (29.69%), Postives = 94/192 (48.96%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           MDV +AF+N  ++E  +V QP   VN   P +V++L   +YGLKQAP  W E +   L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
            G+ R   +  L+   TS   I   +YVDD++       + D     +   + M  +G++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 SCFLGLEIKQRSEG-IFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEH 180
             FLGL I Q S G I +S + Y      +  ++  +  +TP      + +  +  + + 
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 181 KLYRSMVGSLLY 192
             Y+S+VG LL+
Sbjct: 181 TPYQSIVGQLLF 192

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy TrEMBL
Match: A0A5D3E1T0 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00520 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.5e-90
Identity = 168/191 (87.96%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           MDVKSAF+NGYLNEE FV QPK  V+SEFP+HVYKLNKALYGLKQAPRAWY+RLTIYLGD
Sbjct: 410 MDVKSAFLNGYLNEEVFVAQPKGFVDSEFPQHVYKLNKALYGLKQAPRAWYKRLTIYLGD 469

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           KGYSR GT KTLFINRTSSELI+AQIYVDDIIFGGFPKA + NFINIMKSEFEMSMVGEL
Sbjct: 470 KGYSRSGTSKTLFINRTSSELIIAQIYVDDIIFGGFPKAFIGNFINIMKSEFEMSMVGEL 529

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           SCFLGL+IKQRS  IFISQEKY KNLVKKFGLDQCQ+KRT  ATHVKVTKDINGTVV+HK
Sbjct: 530 SCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHK 589

Query: 181 LYRSMVGSLLY 192
           LYRS+VGSLLY
Sbjct: 590 LYRSLVGSLLY 598

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy TrEMBL
Match: A0A5A7SXM5 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00750 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.9e-90
Identity = 169/191 (88.48%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           MDVKSAF+NGYLNEE FV QPK  V+SEFP HVYKLNKALYGLKQAPRAWYERLTIYLGD
Sbjct: 162 MDVKSAFLNGYLNEEVFVAQPKGFVDSEFPHHVYKLNKALYGLKQAPRAWYERLTIYLGD 221

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           KGYSR GT KTLFINRTSSELI+AQIYVDDIIFG FPKAL+ NFINIMKSEFEMSMVGEL
Sbjct: 222 KGYSRNGTSKTLFINRTSSELIIAQIYVDDIIFGVFPKALIGNFINIMKSEFEMSMVGEL 281

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           SCFLGL+IKQRS  IFISQEKY KNLVKKFGLDQCQ+KRT  ATHVKVTKDINGTVV+HK
Sbjct: 282 SCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHK 341

Query: 181 LYRSMVGSLLY 192
           LYRS+VGSLLY
Sbjct: 342 LYRSLVGSLLY 350

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy TrEMBL
Match: A0A5D3CS19 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001080 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.4e-85
Identity = 157/191 (82.20%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           M VKSAF+NGYLNEE +V QPK  V+ EFP++VYKLNKALY LKQAP+AWYERLT+YLG+
Sbjct: 758 MHVKSAFLNGYLNEEVYVTQPKGFVDPEFPQYVYKLNKALYRLKQAPQAWYERLTMYLGE 817

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           + YSRG TDKTLFINRTS+ LIVAQIYVDDIIFGGFPK LVDNFINIMKSEFEMS+VGEL
Sbjct: 818 RVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGEL 877

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           SCFLGL+IKQRSEG+FISQEKYAKNLVKKFGLDQ Q+KRTPA TH K+TKD+ GT V+HK
Sbjct: 878 SCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAKITKDMVGTEVDHK 937

Query: 181 LYRSMVGSLLY 192
           LYRSM+GSLLY
Sbjct: 938 LYRSMIGSLLY 948

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy TrEMBL
Match: A0A5A7UF87 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004260 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.3e-84
Identity = 154/191 (80.63%), Postives = 173/191 (90.58%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           MDVKSAF+NGYLNEE +V QPK  ++SEFP  +YKLNKALYGLKQAP  WYE+LT+YLG+
Sbjct: 507 MDVKSAFLNGYLNEEVYVAQPKRFIDSEFPHKLYKLNKALYGLKQAPLTWYEQLTMYLGE 566

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           +GYSRG TDKTL INRTS++LIVAQIYVDDIIFGGFPK LV+NFINIM SEFEMS+VGEL
Sbjct: 567 RGYSRGETDKTLLINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMTSEFEMSLVGEL 626

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           SCFLGL+IKQRSEG+F+SQEKYAKNLVKKFGLDQ QYKRTPAATH K+TKD  GT V+HK
Sbjct: 627 SCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAKITKDTVGTAVDHK 686

Query: 181 LYRSMVGSLLY 192
           LYRSM+GS LY
Sbjct: 687 LYRSMIGSHLY 697

[Close]

BLAST of Cmc06g0164701.1 vs. ExPASy TrEMBL
Match: A0A5D3BIP9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00070 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.3e-84
Identity = 153/191 (80.10%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVVNSEFPRHVYKLNKALYGLKQAPRAWYERLTIYLGD 60
           MDVKSAF+NGYLNEE +V QPK  ++SEFP++VYK+NKALYGLKQAPRAWYERL IYL +
Sbjct: 533 MDVKSAFLNGYLNEEVYVAQPKGFIDSEFPQYVYKINKALYGLKQAPRAWYERLIIYLDE 592

Query: 61  KGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGEL 120
           +GYS+G TDKTLFINRTS++LIVAQIYVDDIIFGGFPK LV+NFINI+KSEFE+S+VG+L
Sbjct: 593 RGYSKGETDKTLFINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIIKSEFEISLVGKL 652

Query: 121 SCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTVVEHK 180
           S FLGL+IKQRS+G+FISQEKYAKNLVKKFGLDQ QYKRT AATHVK+TKD  GT ++HK
Sbjct: 653 SYFLGLQIKQRSKGMFISQEKYAKNLVKKFGLDQSQYKRTLAATHVKITKDTVGTAIDHK 712

Query: 181 LYRSMVGSLLY 192
           LYRSM+GSLLY
Sbjct: 713 LYRSMIGSLLY 723

[Close]

BLAST of Cmc06g0164701.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 118.2 bits (295), Expect = 7.0e-27
Identity = 69/195 (35.38%), Postives = 107/195 (54.87%), Query Frame = 0


Query: 1   MDVKSAFVNGYLNEEFFVVQPKEVV----NSEFPRHVYKLNKALYGLKQAPRAWYERLTI 60
           +D+ +AF+NG L+EE ++  P        +S  P  V  L K++YGLKQA R W+ + ++
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YLGDKGYSRGGTDKTLFINRTSSELIVAQIYVDDIIFGGFPKALVDNFINIMKSEFEMSM 120
            L   G+ +  +D T F+  T++  +   +YVDDII      A VD   + +KS F++  
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 VGELSCFLGLEIKQRSEGIFISQEKYAKNLVKKFGLDQCQYKRTPAATHVKVTKDINGTV 180
           +G L  FLGLEI + + GI I Q KYA +L+ + GL  C+    P    V  +    G  
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 181 VEHKLYRSMVGSLLY 192
           V+ K YR ++G L+Y
Sbjct: 373 VDAKAYRRLIGRLMY 387

[Close]

BLAST of Cmc06g0164701.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-10
Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 86  IYVDDIIFGGFPKALVDNFINIMKSEFEMSMVGELSCFLGLEIKQRSEGIFISQEKYAKN 145
           +YVDDI+  G    L++  I  + S F M  +G +  FLG++IK    G+F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 146 LVKKFGLDQCQYKRTPAATHVKVTKDIN-GTVVEHKLYRSMVGSLLY 192
           ++   G+  C+   TP    +K+   ++     +   +RS+VG+L Y
Sbjct: 65  ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQY 109

The following BLAST results are available for this feature:

BLAST of Cmc06g0164701.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29824.1	7.2e-90	87.96	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0035790.1	1.2e-89	88.48	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0054435.1	9.1e-85	82.20	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [...	[more]
KAA0054623.1	2.6e-84	80.63	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYJ98295.1	1.7e-83	80.10	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0164701.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	8.1e-28	34.55	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.3e-27	34.03	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	1.2e-26	34.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.7e-23	31.96	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	1.5e-18	29.69	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc06g0164701.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1T0	3.5e-90	87.96	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7SXM5	5.9e-90	88.48	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3CS19	4.4e-85	82.20	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G...	[more]
A0A5A7UF87	1.3e-84	80.63	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3BIP9	8.3e-84	80.10	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G...	[more]

BLAST of Cmc06g0164701.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.0e-27	35.38	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	6.0e-10	32.71	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..162 e-value: 8.8E-42 score: 143.4
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 1..166
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..166
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..145

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc06g0164701	Cmc06g0164701	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc06g0164701.1-exon	Cmc06g0164701.1-exon-CMiso1.1chr06:15501055..15501630	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc06g0164701.1-cds	Cmc06g0164701.1-cds-CMiso1.1chr06:15501055..15501630	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc06g0164701.1	Cmc06g0164701.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding