Cmc05g0145121.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc05g0145121.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	RRM domain-containing protein
Location	CMiso1.1chr05: 28147692 .. 28152306 (+)
Sequence length	1821
RNA-Seq Expression	Cmc05g0145121.1
Synteny	Cmc05g0145121.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTAATTTTAAACATTAAAAGATTATTATAGCAAATATCACAATATTTCATGGGTTAAATATAAGGAGGGCAGTGGGCATGCCTTTTCCCTCCATGCAATACGGTATGTCGTTAGGTTTGCGTCTCACTTCCGACATGTCGATTAACGGTTCATAGGCGAGTTCTTAACATTGGGGAAGGGAGTTCGGTGGTGTTTCTCGACTTTCTTCCTTCTTCTCGGACATTGGATTTTCACGGTGGTCATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATACCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGGTCACCTCCTCCACCAACCGGTTTCGCTCCTTCCATCTCCTTATGTGACAAATTTTCTTTTACGACTGTTGATAATAGCGTTACGTCGTGTATACCTCAGAATTATGTAGCTCTTTAGGTGTTTCTGATGGAATATTTGATTGCTTGAATATAACTTTTTTTTTTCCAAGGCTATTTGAAGTTGAGAGATCAATTCAAACTCAATTGTTTAGTTTATGACGTTTCTTTACGAGTATAGAAGTGGTTTGAGTTTCTGAAATTGGTGAAAGAAACTGGATTGTGGTGAAGATTTGTTGTTATTGTGGAAAATTTGAGTAGTTAGTTTACTTTTGTGTTTGTTGAAATGCTTCAATTAGGCTTGTTGAATGGCGTTTTTACATATGGTTTAATGTAATTCTAGTTGAACGCTTTGATTTGGTCTTCAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGGTATGTTAATTTATGGCTGGAATACAAATCTCTTTAGAATTTTTCATTATGTTTTTTTGAGTTTTGAGTCCTGACATTAAGGCTTTGAATTAGACTATTGAAGGACGGGTTGTCAGAGTTAATGGAGTGAAGAGTAGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAACTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGTGATCTACCAAAGGATCAATTTTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGTTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCAGATTTGAGTGGAGGCGGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAACAGGTTAGTCTGTCCTCAAACTTATTGAAATCAATATTAAGTAGTTTTGATATAAATTTTATGTTTATCTTTGGTCTCATATGACTAATTTGCCCATCTGTGGCATTATGTTGAAAACTTGAGGTTGCCCAAATTGTTGTGCTTGGAATGTCTGATTATTTCTAGGCATTTCATGTTTGATAGTTTTGATCTGGGCAGTTAGTGATTCCAGAAATTATCTAGAGACCTTGAAAGCACTTTATTTTCTCATTCTTTTATAGTTCATTGGGTTTATATTAAGGGCGCTGAACAATTGGGAAAGACATTGCTACTAGCAAATTGCGCAACTAGATGGCAGTAGAGGCATGTTCCAAAGAATGAATCTGCTGTTACAACGCTCAGAGAGATGAATTAAATAATAACTTTTCTGTAGGGATCACTTAAAAAATGCTTCCACATCATTTAGGGATCACTTAAAAAATGCTTCCACATCATTCTTAGTTCATTTTAGTGCTTGCATAGTCTTGCTCAATTTTTGTTTTTCTTTTCCCCAAATGTATGCACCATTTACCCATTGCTTTTTGTATGGTATATAATCCTCTATTGTAAAGGAAGTGGTTCCCTGTTAACAACTACAACTTAAAATTTTCGTTTACAAATTGGAGGATCTTTTGTAAATCCCATTTGGATGGGTTTTCTTTTGTATTGTTTCATTTTCATTGTTTCCTGTTGAAAAAGGAAAAAAATGAAATGATAAATAAAAAGTAAAGGAAGAGGAAAATGGTAAATGTTCTTCTCTCCTGTTTCATACAAGGGATGGAGGAGTCACTTTTTGGTTATGATTTTATGATTGCTACTATGTCTTCTGTTTTCAGTGCCTCCTGTTTCATAAAAAAGATAGAGAAAATGGGATGACCTTTTGGCTATGATTATATGATTGCTATTGTGGCTTCTGTTTTCAGTCTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAAGTATGCTACTGCTTACCATTTTTCACCTTTTAGATTCTCTATTAAAAGGTTACAACTTACTAATAAGCATTTAATGCAACTTTTAATCCTATTGTTTGTGTCGTAGTTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTCAGAAAAGAGGTTTGTTTCCTTGATGATTCTTTTTTTTCCAGGCAGGAGAGAGAGGCTCGTTTAGAAATAGTCGGGAAAGTTTCCAGAAAAATTTCAATGTGGATTAGCATAATTTAGTATTCTTGATCTGAAATTTACTTCAAAATATATGTGCATATAGGTCCCAAATCAATACACGTTGAGTTTTGTGGGAGTTCTGCAACTTGTTTTGTATCATTCTTTTAGATATCATGATTACACTTGAATTTAAAGCCTTAGTTTTTCCTTTTCAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGGTAAAAAAAAATTATTTTATAACTTGCAACTATGATACTTTTGTTGTGTTCTGATTGTAGACCTGTCCCTCAATTCTAACTAATATCCATTTGGATCCAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACACAGCTGATCAAGGTAACTACCTGTTCAATATTTTACTTTGTTTCCATAACTGCATTGGCATTGATGATTTTGGTTTTGTTATGCAAATAACTGCAGCTCCATAAAAGCTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAAACCAGCGAACAAGAACTTCAGGTTTGTGTTTCAACATTAAAACTCCTTGATTCTCTTCTTTCTCATAATAGTAATAGTAATAATAAAAAGAAACAGTTAACAATGTATCTGTATTTTGTTGGGAATCTCACATATGACATACATATCCTAATTATAATATGACATAATATGAAGATTATATTTATCTATATTTGTTATTGGAGAATTATCATATATTAATATTATATGTAAGCATGTGTAAACATTACCTAAATCTCCCATCTCTTTATCAGATTACTCTGCTCCGAAGATACTTACGATTCATCCTTTTGAAATTGCTCGTGAATGAATAAAACATAATTACTATTTCTTACTTTACAGGCTCTAGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGAAGTATGAAGTTCCAACCAATTTCAATTTCAATTTCAATCTCTTTACAAGCTGCATTATGCTATTCTGTTGGCATGCAACGCTTCACCATGGTCGGGGCATTCACGGTCTTTTGTTCATACTAATGACAAGTTGTGATGTAGAAATAGAATTCCTTTGTAACCTAATTTTCCCAAGATTGAGCTGTCCATTCATTTCATGGTTTGTTCACAATCAACTATGCACATGTGTTTACTCACTTTTATCAAGTTAAATAGGTAACAGTTGTATTTCAAAATTAAATTTAGCATCCAAGTAGTTTTTCCACCTTGCCTGAGATTCCTTCCCATGAATGGAATTTTAAAGTTTAGGTTGTAATCCTTTTCAAACCGAATTCCATACCGGTATTTCGTTACATTTCATCCCCCTCTTTATCTTTTACTTACAATTTAACTCTTTTTTTTCGAAAGCTGGACAAAAAAGGACAAAACAGGATGGCGAGTTCGTGTTCAACGAAAGAGACTGAAGAAGAAGAAAAAGTGTTTGAGAAATGCATCAAAAGGTACGCTTGAAAAGACATTTTAGAATTATATAGGGAAACAGTTGTGTGCAGATTTATTGAATGAAATAGAATCTCTGTTTGTGTCTTTCTTTTTTATGTTTCAAGCCTGACAAAAATGTCATAAATAAATGAAGTAAAGTTAGTAGAGAATGTTTGAGATGGGAATTGGGAATGGTCCAGATAGGCCTTTTCTGGTGGATAGCCAAATTTAAAGAGGCAAAAGCTCTAGAAAATGTAAAGATGGTAACGTGGTTACTTAGTAAAGTTTGTGAAAGCTAAGAGGAAATTAAGGTGGAAAGTTCTTCAGGCACTGACCTTTCGGTGCCTTGAAAATCTTCAAATTTCCTTAAACAAATTAAGAGCTAAAGATTTTTTTTTTTTCTTAATTTATTCATAGATATTGAATACTATGTTGTGTTTTTTATAGATTAATTATAATTTCA

mRNA sequence

TTTTTAATTTTAAACATTAAAAGATTATTATAGCAAATATCACAATATTTCATGGGTTAAATATAAGGAGGGCAGTGGGCATGCCTTTTCCCTCCATGCAATACGGTATGTCGTTAGGTTTGCGTCTCACTTCCGACATGTCGATTAACGGTTCATAGGCGAGTTCTTAACATTGGGGAAGGGAGTTCGGTGGTGTTTCTCGACTTTCTTCCTTCTTCTCGGACATTGGATTTTCACGGTGGTCATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATACCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAGGACGGGTTGTCAGAGTTAATGGAGTGAAGAGTAGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAACTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGTGATCTACCAAAGGATCAATTTTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGTTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCAGATTTGAGTGGAGGCGGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAACAGTCTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTCAGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACACAGCTGATCAAGCTCCATAAAAGCTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAAACCAGCGAACAAGAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGAACTGGACAAAAAAGGACAAAACAGGATGGCGAGTTCGTGTTCAACGAAAGAGACTGAAGAAGAAGAAAAAGTGTTTGAGAAATGCATCAAAAGGTACGCTTGAAAAGACATTTTAGAATTATATAGGGAAACAGTTGTGTGCAGATTTATTGAATGAAATAGAATCTCTGTTTGTGTCTTTCTTTTTTATGTTTCAAGCCTGACAAAAATGTCATAAATAAATGAAGTAAAGTTAGTAGAGAATGTTTGAGATGGGAATTGGGAATGGTCCAGATAGGCCTTTTCTGGTGGATAGCCAAATTTAAAGAGGCAAAAGCTCTAGAAAATGTAAAGATGGTAACGTGGTTACTTAGTAAAGTTTGTGAAAGCTAAGAGGAAATTAAGGTGGAAAGTTCTTCAGGCACTGACCTTTCGGTGCCTTGAAAATCTTCAAATTTCCTTAAACAAATTAAGAGCTAAAGATTTTTTTTTTTTCTTAATTTATTCATAGATATTGAATACTATGTTGTGTTTTTTATAGATTAATTATAATTTCA

Coding sequence (CDS)

ATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATACCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAGGACGGGTTGTCAGAGTTAATGGAGTGAAGAGTAGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAACTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGTGATCTACCAAAGGATCAATTTTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGTTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCAGATTTGAGTGGAGGCGGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAACAGTCTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTCAGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACACAGCTGATCAAGCTCCATAAAAGCTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAAACCAGCGAACAAGAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA

Protein sequence

MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

Homology

[Close]

BLAST of Cmc05g0145121.1 vs. NCBI nr
Match: XP_008457973.1 (PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061579.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 656.4 bits (1692), Expect = 1.4e-184
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240
           KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Cmc05g0145121.1 vs. NCBI nr
Match: TYK10694.1 (zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 653.3 bits (1684), Expect = 1.2e-183
Identity = 344/346 (99.42%), Postives = 345/346 (99.71%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240
           KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDN LTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Cmc05g0145121.1 vs. NCBI nr
Match: XP_004139331.2 (U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothetical protein Csa_019381 [Cucumis sativus])

HSP 1 Score: 634.8 bits (1636), Expect = 4.3e-178
Identity = 339/360 (94.17%), Postives = 344/360 (95.56%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDY--------------DKSLDNDRDQVLRRDNSL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDY              DKSLDNDRDQVLRRDN L
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of Cmc05g0145121.1 vs. NCBI nr
Match: XP_038889756.1 (serine/threonine-protein kinase prpf4B [Benincasa hispida])

HSP 1 Score: 597.8 bits (1540), Expect = 5.9e-167
Identity = 316/346 (91.33%), Postives = 330/346 (95.38%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGR+IEGRVVRVNGVKSR GGRFG+EGNRFD ERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRSIEGRVVRVNGVKSRSGGRFGREGNRFDVERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           RHRGRNNDWSRD DRSREHDLDKERGY+HSQD D PKD+ LDRDPELEK+SKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDRDRSREHDLDKERGYEHSQDHDPPKDKLLDRDPELEKSSKDNEKVHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240
           KLNHDQD EK+HGAD  GGGGID  DDY+KSLDNDR+Q+ RRDN LT EGRTARDLSSDS
Sbjct: 181 KLNHDQDSEKNHGADWIGGGGIDNADDYEKSLDNDRNQLSRRDNGLTSEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLV+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVIELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Cmc05g0145121.1 vs. NCBI nr
Match: XP_023547216.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568.9 bits (1465), Expect = 2.9e-158
Identity = 303/346 (87.57%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDVNWERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240
           KL+H QDWEKDH AD +GGGGID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.1e-14
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIK 66
           S +++GG+ Y   ED+LR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVRVNGVKSRL-GGRFGKEG 95
            +DGR + GRVV+VN    R  GG FG  G
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFGGGG 129

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-11
Identity = 63/179 (35.20%), Postives = 87/179 (48.60%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKSRLGGR---------------FGKEGNRFDAERDVNWERDR 125
           K M GR +  +V+ VN  + ++GG                 G E   F   R  +W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR----HRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRD 165
               D D +R+R     R R  D     DR  + DL++ER  +   DR +  D   DRD
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYM--DGRRDRD 186

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy Swiss-Prot
Match: Q18409 (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-11
Identity = 58/161 (36.02%), Postives = 80/161 (49.69%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIK 65
           D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA++
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV----ARRPPGFAFVEYDDVRDAEDAVR 61

Query: 66  DMDGRTIEG---RVVRVNGVKSRLGGRFGKEGNR---------FDAERDVNWERDRDRGR 125
            +DG  I G   RV    G +   GGR G  G R         +  +R  +  R RDRGR
Sbjct: 62  ALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGR 121

Query: 126 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRD 155
           D   DR R R R+    R  +RSRE +  + R  +  Q+RD
Sbjct: 122 DRSRDRSRDRSRDRSRDRSRERSRERERTRSRS-RSPQERD 157

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-09
Identity = 57/158 (36.08%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 5   DDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDA 64
           D+  ++VGGL ++ TE++L ++F  YG V  V ++ DR S R + +GFVTF NP  A DA
Sbjct: 4   DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63

Query: 65  IKDMDGRTIEGRVVRVN----GVKSRLGG-RFGKEGNR--FDAERDVNWERDRDRGRDYD 124
           +  M+G++++GR +RV+        R GG R G  G R  F   R      DR  G    
Sbjct: 64  MMAMNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRGFFRGGRGRGGGGDRGYGGSSR 123

Query: 125 HDRYRHRGRNNDWSRD-HDRSREHDLDKERG-YKHSQD 153
            +  R  G  +  SRD + RS     D+  G Y+ S D
Sbjct: 124 FEN-RSGGYQSSGSRDYYGRSHGSYGDRSGGSYRDSYD 160

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.2e-09
Identity = 48/142 (33.80%), Postives = 69/142 (48.59%), Query Frame = 0


Query: 5   DDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDA 64
           D+  ++VGGL +D  E  L ++F  YG +  V ++ DR T R + +GFVTF N   A DA
Sbjct: 4   DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query: 65  IKDMDGRTIEGRVVRVNGV-KSRLGGRFGKEGNRFDAERDVNWERDRDRG-------RDY 124
           +  M+G++++GR +RV+   KS      G  G            R R RG       R Y
Sbjct: 64  MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRSRGRGFSRGGGDRGY 123

Query: 125 DHDRYRHRGRNNDWSRDHDRSR 138
              R+  R      SRD+  SR
Sbjct: 124 GGGRFESRSGGYGGSRDYYASR 145

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 6.8e-185
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240
           KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy TrEMBL
Match: A0A1S3C6W1 (zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC103497531 PE=4 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 6.8e-185
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240
           KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 653.3 bits (1684), Expect = 5.7e-184
Identity = 344/346 (99.42%), Postives = 345/346 (99.71%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240
           KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDN LTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy TrEMBL
Match: A0A0A0LIV9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV=1)

HSP 1 Score: 634.8 bits (1636), Expect = 2.1e-178
Identity = 339/360 (94.17%), Postives = 344/360 (95.56%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDY--------------DKSLDNDRDQVLRRDNSL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDY              DKSLDNDRDQVLRRDN L
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of Cmc05g0145121.1 vs. ExPASy TrEMBL
Match: A0A6J1G3E0 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC111450445 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 3.2e-158
Identity = 303/346 (87.57%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDVNWERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240
           KL+H QDWEKDH AD +GGGGID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Cmc05g0145121.1 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 217.6 bits (553), Expect = 1.5e-56
Identity = 159/350 (45.43%), Postives = 209/350 (59.71%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DD +S+YVGGLPYD TE+ +RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRD--YDHD 120
            DAI+DMDG++I GR VRVN V +R GGR      R        W+R  DR  D  Y+ D
Sbjct: 61  DDAIEDMDGKSIGGRAVRVNDVTTR-GGRMNPGPGRLQPHG--GWDRSPDRRSDGNYERD 120

Query: 121 RYRHRGRNNDWSRDHDRSREHD-LDKERGYKHSQDRDLPKD-QFLDRDPELEKTSKDNEK 180
           RY  R R  D  R  DR ++H  ++KER Y+HS D +   D   +DR+   E+    +E 
Sbjct: 121 RYSDRSRERD--RSQDRRKDHRYIEKERAYEHSHDFERRNDHDMVDRNGYKERVFDGDE- 180

Query: 181 LHDLKLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDL 240
                     DW  D  + +  G GI+ T     S    R Q  +R++S  ++G   RD 
Sbjct: 181 ---------GDWRGDR-SYVDNGRGINGT-----SAHEGRSQETKREDSTILDGGRGRDH 240

Query: 241 SSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALIS 300
            S+SS D  H++KE LE   +  E LR EV  +EER   KE +  ELQKK+K+LED LI+
Sbjct: 241 FSNSSGD--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLIN 300

Query: 301 AKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 347
            KK  S R+ +L KLHKS+  V++ +  LK  EQELQ LV S A E   G
Sbjct: 301 EKKLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREGVAG 327

[Close]

BLAST of Cmc05g0145121.1 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-15
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIK 66
           S +++GG+ Y   ED+LR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVRVNGVKSRL-GGRFGKEG 95
            +DGR + GRVV+VN    R  GG FG  G
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFGGGG 129

[Close]

BLAST of Cmc05g0145121.1 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 72.4 bits (176), Expect = 8.0e-13
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 10 YVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMD 69
          +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70 GRTIEGRVVRVNGVKSR-----LGGRFGKEG 95
          G+ ++GRV+ VN  +SR      GGR G  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGG 99

[Close]

BLAST of Cmc05g0145121.1 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 72.4 bits (176), Expect = 8.0e-13
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 10 YVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMD 69
          +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70 GRTIEGRVVRVNGVKSR-----LGGRFGKEG 95
          G+ ++GRV+ VN  +SR      GGR G  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGG 99

[Close]

BLAST of Cmc05g0145121.1 vs. TAIR 10
Match: AT4G39260.3 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 72.4 bits (176), Expect = 8.0e-13
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 10 YVGGLPYDATEDTLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMD 69
          +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70 GRTIEGRVVRVNGVKSRLGGRFG 92
          G+ ++GRV+ VN  +SR  G  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGG 91

The following BLAST results are available for this feature:

BLAST of Cmc05g0145121.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457973.1	1.4e-184	100.00	PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061...	[more]
TYK10694.1	1.2e-183	99.42	zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]	[more]
XP_004139331.2	4.3e-178	94.17	U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothet...	[more]
XP_038889756.1	5.9e-167	91.33	serine/threonine-protein kinase prpf4B [Benincasa hispida]	[more]
XP_023547216.1	2.9e-158	87.57	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc05g0145121.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	4.1e-14	46.67	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
O22703	2.5e-11	35.20	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q18409	7.3e-11	36.02	Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=62...	[more]
Q28IQ9	3.1e-09	36.08	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
P60826	5.2e-09	33.80	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]

BLAST of Cmc05g0145121.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7D5	6.8e-185	100.00	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C6W1	6.8e-185	100.00	zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3CHM1	5.7e-184	99.42	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0LIV9	2.1e-178	94.17	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV...	[more]
A0A6J1G3E0	3.2e-158	87.57	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Cmc05g0145121.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	1.5e-56	45.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	2.9e-15	46.67	glycine-rich RNA-binding protein 3	[more]
AT4G39260.1	8.0e-13	42.86	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	8.0e-13	42.86	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.3	8.0e-13	43.37	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 318..338
None	No IPR available	COILS	Coil	Coil	coord: 245..300
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..216
None	No IPR available	PANTHER	PTHR23147:SF172	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..344
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..344
None	No IPR available	CDD	cd00590	RRM_SF	coord: 9..80 e-value: 1.35712E-22 score: 87.7457
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..80 e-value: 1.4E-23 score: 94.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 5.0E-21 score: 74.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..84 score: 19.501883
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..96 e-value: 2.9E-24 score: 87.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..94

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc05g0145121	Cmc05g0145121	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28147692..28148046	exon
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28148472..28148570	exon
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28148664..28149127	exon
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28150066..28150132	exon
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28150239..28150292	exon
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28150556..28150624	exon
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28150725..28150790	exon
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28150875..28150943	exon
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28151283..28151325	exon
Cmc05g0145121.1-exon	Cmc05g0145121.1-exon-CMiso1.1chr05:28151772..28152306	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0145121.1-five_prime_utr	Cmc05g0145121.1-five_prime_utr-CMiso1.1chr05:28147692..28147935	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0145121.1-cds	Cmc05g0145121.1-cds-CMiso1.1chr05:28147936..28148046	CDS
Cmc05g0145121.1-cds	Cmc05g0145121.1-cds-CMiso1.1chr05:28148472..28148570	CDS
Cmc05g0145121.1-cds	Cmc05g0145121.1-cds-CMiso1.1chr05:28148664..28149127	CDS
Cmc05g0145121.1-cds	Cmc05g0145121.1-cds-CMiso1.1chr05:28150066..28150132	CDS
Cmc05g0145121.1-cds	Cmc05g0145121.1-cds-CMiso1.1chr05:28150239..28150292	CDS
Cmc05g0145121.1-cds	Cmc05g0145121.1-cds-CMiso1.1chr05:28150556..28150624	CDS
Cmc05g0145121.1-cds	Cmc05g0145121.1-cds-CMiso1.1chr05:28150725..28150790	CDS
Cmc05g0145121.1-cds	Cmc05g0145121.1-cds-CMiso1.1chr05:28150875..28150943	CDS
Cmc05g0145121.1-cds	Cmc05g0145121.1-cds-CMiso1.1chr05:28151283..28151324	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0145121.1-three_prime_utr	Cmc05g0145121.1-three_prime_utr-CMiso1.1chr05:28151325..28151325	three_prime_UTR
Cmc05g0145121.1-three_prime_utr	Cmc05g0145121.1-three_prime_utr-CMiso1.1chr05:28151772..28152306	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc05g0145121.1	Cmc05g0145121.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding