Cmc05g0136701.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc05g0136701.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	prefoldin subunit 1
Location	CMiso1.1chr05: 19988417 .. 19990606 (-)
Sequence length	481
RNA-Seq Expression	Cmc05g0136701.1
Synteny	Cmc05g0136701.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCTGACCAGGTTTGTTTTAGAGTCAAAGTCAGTTCTAATGAATGAGCAGGAGCAAAAGTTCAAGGATAGTGAAACTGCAATTGCCTCGCTCCAGGTACATATTAATATCAGTTTCCTCTGTAGAGACGGGAGATCTACATTATTTTTTTCCAATTGTGTATACATGTCATTGACGTTGTCTCTTTTCGAAGATTTTGTTATATTTGACTTCCCTAAATAACATGTTCTTGCCCGTCATAGTTGTATATTTTCTTGCCTCACTAATTTTGACTTTGGTACATATGTTTTAATTTATCCACACTTGCACGGAGGGTGTTCTCTTCGAGCATTTCTTGGGATTTCCAAACATTTAAGTCGATTGAGCCAATTTGACATTTTTCTACTCAATCTTTTTTATGTGAATGAATTTCACACTAGCCCTAAGAATAAACTTTGCTGAAGAGTTTGAATGTTGGATGCCAACAATATTATCTTTACTCTTGGCATTTTTACTAAGCAAACTGTTAAATCTCCAATTCTTCATACATATAAAAGGAGGGGCAAGAAGGGAAATGCACCTGATATGAGTTGGGGAGAGGCCAATGGAGAGGATGGAAATACCTGTGGGTTCCACCTGGTTGATAATATAAATAAAGAATGTTCTGGGGATTAATGTTTTTAGGTTTTATTTGGTAAAAAGCTGCTGTGAGCTTTAAGGGAGAGGATTCCAACCTTCTCGAAGGAGCTGGTTATTTCTTTATTTGTTTGATCTTGCCTTCCATTTGTGTTCTCTTTTAGACTCTATTTTGGCTTGTTGAACTGGTGATATTATTGCAATATATGTTAATCAGAGTACTGTGTCTGTTTTAGCCATTGTTGAGATTTTTCTGCTCAGGTTAAGGAGTCTTAACGGAAACTTATTCCTCTGTTTTTACCCCTTCTTTCCCTTTTATCTCAAATTACTTGTGTAAGTAACATTATGACTGGTGGAAGCGTCCTTGAGATTTGGAATGCAATGTGCTTTCAATGTTTCCCTTTGAAATTTCTTAGAGGTATTCTTATATGTATATATAATGTTATTCTTGTTTTATCTTGGACAAATGGCATTTGGCTTTTTCTTTTTTCTCCCGTCATGAAAGATGGTTTTGTTGAACATTTGCAGAGCTCAAAGGAGTATTTAGAGAGGCAGATGGCTGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACTAGATCCAGGTATAGCTCGCCAGATTATGTCTATGTCTATATAGCATAGGGCAGGATCTTCTCCCTTCTTGGATGATTTGACATTAGCTCAACTTTTTATATTGAATGTTCACATTCTTGGGTCAGAAATTATTTCGCTGGTTCAGTGTTGTGAGTTTTGATTCTACTTGGTTAGCTTATATAATTTCTGATGCCCAAAACTTCGTTTCATATGCATTTCATACTCCCAAGTGTCGAACTGTCTTTGTGCTGTTTTTGTAGTTTTTATTTTTGGTTAAATTACAAATGTCAGAATTTAGTATATAGTTCGGTAAAACCTTTCTAAATAGTCCCTACAATAGTTATTATCTAAGGAAATTTTATCAAACCATCGAGACTATTTATGAGACTACATTATAGGTATTTTTTTCAAAAGAATTGTCAAAAATAGTAAATTTGACAAAAATATTTACTAACATATAGCAAAATTTCGAATTCTATCAATAATAAACATTTATAGACACTAATATGCTTCTACCAGTGACATTGATAGACAGAGTCTATCAGTCTCTTTCATCGATAGAATCCAAAATTTTGCTATAACGTCTAAATATTTTAATTTATTTTGCTATTTTAAAAAATGTCCATTTTTTAACTATAAAAACTAATTTCTAATTTTCTCCTAACTATAGGTATCAAATTTGCAATTTAACATAGAAGTTTGAAGGTTAAGATGCAAGTAGCCTTGTTGGTTGAAACTTGATTGCAAACAGTTAGAGTAGTTGATCAAAACAAAAATTTATGAGTGCAATTGTAATAAACCTTTTAGTGGTGTTTATTTTTGGGAATGTAGAAAACCATAATCATATATGTCTGTAATTATAGATATACGGAATTATAGATATTCGACATCTTTAGATTATCATGTTTGTTTGAAGATATATTTTTGTAGACATCTAAAAATATTTTGATTATTGTATTTGTTTCTTAGGACTTTTATT

mRNA sequence

GTCCTGACCAGGTTTGTTTTAGAGTCAAAGTCAGTTCTAATGAATGAGCAGGAGCAAAAGTTCAAGGATAGTGAAACTGCAATTGCCTCGCTCCAGAGCTCAAAGGAGTATTTAGAGAGGCAGATGGCTGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACTAGATCCAGGTATCAAATTTGCAATTTAACATAGAAGTTTGAAGGTTAAGATGCAAGTAGCCTTGTTGGTTGAAACTTGATTGCAAACAGTTAGAGTAGTTGATCAAAACAAAAATTTATGAGTGCAATTGTAATAAACCTTTTAGTGGTGTTTATTTTTGGGAATGTAGAAAACCATAATCATATATGTCTGTAATTATAGATATACGGAATTATAGATATTCGACATCTTTAGATTATCATGTTTGTTTGAAGATATATTTTTGTAGACATCTAAAAATATTTTGATTATTGTATTTGTTTCTTAGGACTTTTATT

Coding sequence (CDS)

ATGAATGAGCAGGAGCAAAAGTTCAAGGATAGTGAAACTGCAATTGCCTCGCTCCAGAGCTCAAAGGAGTATTTAGAGAGGCAGATGGCTGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACTAGATCCAGGTATCAAATTTGCAATTTAA

Protein sequence

MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI

Homology

[Close]

BLAST of Cmc05g0136701.1 vs. NCBI nr
Match: XP_008450466.1 (PREDICTED: prefoldin subunit 1 isoform X2 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI 51
           MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI
Sbjct: 74  MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI 123

[Close]

BLAST of Cmc05g0136701.1 vs. NCBI nr
Match: XP_004152849.1 (prefoldin subunit 1 isoform X3 [Cucumis sativus] >KAE8651696.1 hypothetical protein Csa_006195 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI 51
           MNEQEQKFKDSETAIASLQSSKEYLE+QMAEVENNLRELLQ DPGIKFAI
Sbjct: 74  MNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIKFAI 123

[Close]

BLAST of Cmc05g0136701.1 vs. NCBI nr
Match: XP_008450462.1 (PREDICTED: prefoldin subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 3.7e-14
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI 47
           MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI
Sbjct: 74  MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI 119

[Close]

BLAST of Cmc05g0136701.1 vs. NCBI nr
Match: XP_031736852.1 (prefoldin subunit 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-13
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI 47
           MNEQEQKFKDSETAIASLQSSKEYLE+QMAEVENNLRELLQ DPGI
Sbjct: 70  MNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGI 115

[Close]

BLAST of Cmc05g0136701.1 vs. NCBI nr
Match: XP_004152848.1 (prefoldin subunit 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-13
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI 47
           MNEQEQKFKDSETAIASLQSSKEYLE+QMAEVENNLRELLQ DPGI
Sbjct: 74  MNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGI 119

[Close]

BLAST of Cmc05g0136701.1 vs. ExPASy TrEMBL
Match: A0A1S3BNN6 (prefoldin subunit 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492055 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.7e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI 51
           MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI
Sbjct: 74  MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI 123

[Close]

BLAST of Cmc05g0136701.1 vs. ExPASy TrEMBL
Match: A0A1S3BP94 (prefoldin subunit 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492055 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI 47
           MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI
Sbjct: 74  MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI 119

[Close]

BLAST of Cmc05g0136701.1 vs. ExPASy TrEMBL
Match: A0A0A0LJF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070850 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI 47
           MNEQEQKFKDSETAIASLQSSKEYLE+QMAEVENNLRELLQ DPGI
Sbjct: 74  MNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGI 119

[Close]

BLAST of Cmc05g0136701.1 vs. ExPASy TrEMBL
Match: M0SKE5 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103980266 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-12
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI 51
           +NEQEQK+KDSETAI SLQ+SKEYLE+QMAEVENNLRELLQ DPG+   I
Sbjct: 74  LNEQEQKYKDSETAITSLQTSKEYLEKQMAEVENNLRELLQQDPGLAHQI 123

[Close]

BLAST of Cmc05g0136701.1 vs. ExPASy TrEMBL
Match: A0A4S8K929 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t02220 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-12
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   MNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIKFAI 51
           +NEQEQK+KDSETAI SLQ+SKEYLE+QMAEVENNLRELLQ DPG+   I
Sbjct: 74  LNEQEQKYKDSETAITSLQTSKEYLEKQMAEVENNLRELLQQDPGLAHQI 123

[Close]

BLAST of Cmc05g0136701.1 vs. TAIR 10
Match: AT2G07340.2 (PREFOLDIN 1 )

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-13
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 3   EQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI 47
           EQEQK KDSE A+ASLQ+SKEYLE+Q+AEVENNLRELLQ +PGI
Sbjct: 75  EQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGI 118

[Close]

BLAST of Cmc05g0136701.1 vs. TAIR 10
Match: AT2G07340.1 (PREFOLDIN 1 )

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-13
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 3   EQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGI 47
           EQEQK KDSE A+ASLQ+SKEYLE+Q+AEVENNLRELLQ +PGI
Sbjct: 76  EQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGI 119

The following BLAST results are available for this feature:

BLAST of Cmc05g0136701.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450466.1	1.8e-16	100.00	PREDICTED: prefoldin subunit 1 isoform X2 [Cucumis melo]	[more]
XP_004152849.1	2.0e-15	96.00	prefoldin subunit 1 isoform X3 [Cucumis sativus] >KAE8651696.1 hypothetical prot...	[more]
XP_008450462.1	3.7e-14	100.00	PREDICTED: prefoldin subunit 1 isoform X1 [Cucumis melo]	[more]
XP_031736852.1	4.1e-13	95.65	prefoldin subunit 1 isoform X2 [Cucumis sativus]	[more]
XP_004152848.1	4.1e-13	95.65	prefoldin subunit 1 isoform X1 [Cucumis sativus]	[more]

BLAST of Cmc05g0136701.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc05g0136701.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNN6	8.7e-17	100.00	prefoldin subunit 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492055 PE=3 SV=1	[more]
A0A1S3BP94	1.8e-14	100.00	prefoldin subunit 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492055 PE=3 SV=1	[more]
A0A0A0LJF7	2.0e-13	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070850 PE=3 SV=1	[more]
M0SKE5	6.4e-12	80.00	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103980...	[more]
A0A4S8K929	6.4e-12	80.00	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t02220 PE=3 SV=...	[more]

BLAST of Cmc05g0136701.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07340.2	3.4e-13	81.82	PREFOLDIN 1	[more]
AT2G07340.1	3.4e-13	81.82	PREFOLDIN 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..42
None	No IPR available	PANTHER	PTHR20903	PREFOLDIN SUBUNIT 1-RELATED	coord: 1..46
None	No IPR available	PANTHER	PTHR20903:SF0	PREFOLDIN SUBUNIT 1	coord: 1..46

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc05g0136701	Cmc05g0136701	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0136701.1-exon	Cmc05g0136701.1-exon-CMiso1.1chr05:19988417..19988725	exon
Cmc05g0136701.1-exon	Cmc05g0136701.1-exon-CMiso1.1chr05:19989388..19989463	exon
Cmc05g0136701.1-exon	Cmc05g0136701.1-exon-CMiso1.1chr05:19990511..19990606	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0136701.1-three_prime_utr	Cmc05g0136701.1-three_prime_utr-CMiso1.1chr05:19988417..19988705	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0136701.1-cds	Cmc05g0136701.1-cds-CMiso1.1chr05:19988706..19988725	CDS
Cmc05g0136701.1-cds	Cmc05g0136701.1-cds-CMiso1.1chr05:19989388..19989463	CDS
Cmc05g0136701.1-cds	Cmc05g0136701.1-cds-CMiso1.1chr05:19990511..19990567	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0136701.1-five_prime_utr	Cmc05g0136701.1-five_prime_utr-CMiso1.1chr05:19990568..19990606	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc05g0136701.1	Cmc05g0136701.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0009409	response to cold
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0044183	protein folding chaperone
molecular_function	GO:0051082	unfolded protein binding