Cmc05g0135121.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc05g0135121.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposase
Location	CMiso1.1chr05: 16953311 .. 16955322 (-)
Sequence length	1264
RNA-Seq Expression	Cmc05g0135121.1
Synteny	Cmc05g0135121.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAGACAATGATACTGAGAGGAGAGATGATGTATTTATATAAATGGAGTCCAAATTAAATGAGTGTTAATGTGGAAAACTCAAGCTTTAATGGAATTGAAATACAAGACAGCGTAGAAAAAGTTCGTGAGTCGCCGTCAGATTGAGAAGCATTGTCACTGATGGGTTGATCGTCGTCATCAGATGGGCAGAATGCCAATGTAGAAGACTCCTGCTGCTAATGTGTTAGTAAACCCTAAACAAAAAATTGCAGATCTGTTAAATGTGTAGACTAAAACAATAAAGAAATAAATAATGAGCTAAGAACCTGGTGATAGCGGCGGACATAACAAGCAGAAACGACGACGAACACAACTGAGGAAAGTTAAAAGACGACAACGGCTTGAGCAAATAAATCGATCTGGACTGGAAACGTGCATAAATGGTTGTGGACGTAACTGGTGGCGAACGAACTAGTGGTGGACGCTACGACAGACGAAGACACAGCGGCGACTTGAGGAGATCGACTAGAAACGCTGCAAGCAGACGAAGAGATCCACTAGAAATGGGCAGAAGGTACAGAAATGCTTTCTTCGTCATTGAGAAATACGGGAGAAATTAGGGTTTTTTTTACAAAATTTGGGGAAAAGGGAAATTGGGGTTTAGGTTTTTGAAAAAAAGAAAATAGTTTTTATTTAAAAAGTAAAAAGAATTAGTTTTTTTTTTTAAATAGGTTTTTATTTTTGTTTTCAATTATTTAGTAATTCTGGACGTTTTTGAAATGTCAAGGAAAATTATCTTACTTGACATTTTAAAAATGTCAAGAAATTTTAAAAATTACTCCCCTCCGCCTTTTCATAAAAATTCTTGACGGTTTTCTTTTTAAATTATCCCTTTCTTTACGCTTTTTTCAAAAACCGTCAAGAAAGACTCTTTTTCTAGTAGTGGACCCTCATCCTTTTGTCATTAAGTATAATAGTTATGTCATTAATGGATGTCGCTATCACACAAAGTTTTACGATAAGAATTGAAGTGTTCAAAATGGTGGAGTTAGTTTAGTGGCAAAAAGAATGCAAGTGTCCAGTTCGAAAGATAAAAAACCCCATCATCGGAGATATTTCCTTTTACGAAGTGATTCAAGATATATATGAACTTAATTATAATATATTCAATGTTGCAATGTTTAGATGCGATTAGGTTGAGAACAATAGTGGTATGAAGATCGATGACCTTGGTTTTGTCTTAGTTGATTTAAAAAGAATAGGTCACAAGTCTAATTCATTTATAATGGCAACCCAAGTAAGACAATTTTTTTATGTTGAAGATCAAGTGATGTTAGGTGGTCAATTGTGCTTACTCCACCACAGAGAGATTGTGAAGGTCAATCAAATGATGATGAACTCGAAGATATCGTGTTACATTGTGAAGGAGTACCTAGTGATATGCCAAATATCGATGGAAGCAATGATTTGGATGATAGTATCTCAACATATGTGCAATCAGACTGTGAAGGCACATGGATTCCTAAATAACGCATTTTGGGTGGGTTTCTACTTATTATGTACGTATATGCTATGTTTGATTTTGTATATGCCTAGTATGCCTAATATAATCTACATTGTAAAATTAATTTTTAATATTACTTTGTTCTTCTTACACATGGAGCCAACGATAGTAAGAGACGATCAAGACAAGGAGGTTGGTGGAGTTGAGATTGATTGATTAGTTGTTGGAGGAGTTACTGAACAAAATGTAGAAAGGCCTAAGAAACAAAGAAAATGGGGACCTACGATTATGTTCGATGTGACACGTGTTTGAAGTAAAGGTGGGAGAAAATTGGTTTAATACAATGAAGATGACGTACCTATTGGAGAAAATGGGATAAAGCTAAGCTCTTTTATTAACAAGGTCGTGTGTACACTACCATATTTCCATTAACTATATCATGGACAGATGTGTCTGTAAAAATTGAAGGAAAAGATCTATATCATAGTTGAGGTAAATTTGTTTACAGTTTTTGTACAAGTTTATT

mRNA sequence

AATAAGACAATGATACTGAGAGGAGAGATGATGTATTTATATAAATGGAGTCCAAATTAAATGAGTGTTAATGTGGAAAACTCAAGCTTTAATGGAATTGAAATACAAGACAGCGTAGAAAAAGTTCGTGAGTCGCCGTCAGATTGAGAAGCATTGTCACTGATGGGTTGATCGTCGTCATCAGATGGGCAGAATGCCAATGTAGAAGACTCCTGCTGCTAATGTGTTAGTAAACCCTAAACAAAAAATTGCAGATCTGTTAAATGTGTAGACTAAAACAATAAAGAAATAAATAATGAGCTAAGAACCTGGTGATAGCGGCGGACATAACAAGCAGAAACGACGACGAACACAACTGAGGAAAGTTAAAAGACGACAACGGCTTGAGCAAATAAATCGATCTGGACTGGAAACGTGCATAAATGGTTGTGGACGTAACTGGTGGCGAACGAACTAGTGGTGGACGCTACGACAGACGAAGACACAGCGGCGACTTGAGGAGATCGACTAGAAACGCTGCAAGCAGACGAAGAGATCCACTAGAAATGGGCAGAAGATCAAGTGATGTTAGGTGGTCAATTGTGCTTACTCCACCACAGAGAGATTGTGAAGGTCAATCAAATGATGATGAACTCGAAGATATCGTGTTACATTGTGAAGGAGTACCTAGTGATATGCCAAATATCGATGGAAGCAATGATTTGGATGATAGTATCTCAACATATGTGCAATCAGACTGTGAAGGCACATGGATTCCTAAATAACGCATTTTGGGTGGGTTTCTACTTATTATGTACGTATATGCTATGTTTGATTTTGTATATGCCTAGTATGCCTAATATAATCTACATTGTAAAATTAATTTTTAATATTACTTTGTTCTTCTTACACATGGAGCCAACGATAGTAAGAGACGATCAAGACAAGGAGGTTGGTGGAGTTGAGATTGATTGATTAGTTGTTGGAGGAGTTACTGAACAAAATGTAGAAAGGCCTAAGAAACAAAGAAAATGGGGACCTACGATTATGTTCGATGTGACACGTGTTTGAAGTAAAGGTGGGAGAAAATTGGTTTAATACAATGAAGATGACGTACCTATTGGAGAAAATGGGATAAAGCTAAGCTCTTTTATTAACAAGGTCGTGTGTACACTACCATATTTCCATTAACTATATCATGGACAGATGTGTCTGTAAAAATTGAAGGAAAAGATCTATATCATAGTTGAGGTAAATTTGTTTACAGTTTTTGTACAAGTTTATT

Coding sequence (CDS)

ATGGTTGTGGACGTAACTGGTGGCGAACGAACTAGTGGTGGACGCTACGACAGACGAAGACACAGCGGCGACTTGAGGAGATCGACTAGAAACGCTGCAAGCAGACGAAGAGATCCACTAGAAATGGGCAGAAGATCAAGTGATGTTAGGTGGTCAATTGTGCTTACTCCACCACAGAGAGATTGTGAAGGTCAATCAAATGATGATGAACTCGAAGATATCGTGTTACATTGTGAAGGAGTACCTAGTGATATGCCAAATATCGATGGAAGCAATGATTTGGATGATAGTATCTCAACATATGTGCAATCAGACTGTGAAGGCACATGGATTCCTAAATAA

Protein sequence

MVVDVTGGERTSGGRYDRRRHSGDLRRSTRNAASRRRDPLEMGRRSSDVRWSIVLTPPQRDCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDCEGTWIPK

Homology

[Close]

BLAST of Cmc05g0135121.1 vs. NCBI nr
Match: KAA0040428.1 (uncharacterized protein E6C27_scaffold35G00600 [Cucumis melo var. makuwa] >TYJ98687.1 uncharacterized protein E5676_scaffold429G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 1.6e-57
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MVVDVTGGERTSGGRYDRRRHSGDLRRSTRNAASRRRDPLEMGRRSSDVRWSIVLTPPQR 60
           MVVDVTGGERTSGGRYDRRRHSGDLRRSTRNAASRRRDPLEMGRRSSDVRWSIVLTPPQR
Sbjct: 1   MVVDVTGGERTSGGRYDRRRHSGDLRRSTRNAASRRRDPLEMGRRSSDVRWSIVLTPPQR 60

Query: 61  DCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDCEGTWIPK 114
           DCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDCEGTWIPK
Sbjct: 61  DCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDCEGTWIPK 113

[Close]

BLAST of Cmc05g0135121.1 vs. NCBI nr
Match: KAA0037124.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 47  SDVRWSIVLTPPQRDCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDC 106
           SD RWSIVLTPPQRD E QSNDDEL DI+LHC+GVPSDM NIDG N+LD+++STYV+SDC
Sbjct: 499 SDARWSIVLTPPQRDYEDQSNDDELGDIMLHCQGVPSDMSNIDGGNNLDENMSTYVRSDC 558

Query: 107 EGTWIP 113
           EGTWIP
Sbjct: 559 EGTWIP 564

[Close]

BLAST of Cmc05g0135121.1 vs. NCBI nr
Match: KAA0054810.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 47  SDVRWSIVLTPPQRDCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDC 106
           SDVRWS+VLTPPQRD E + NDDEL D +L CEG+P+DMP++D  NDLDD+ISTY++SDC
Sbjct: 215 SDVRWSVVLTPPQRDFEDRYNDDELGDTILRCEGIPNDMPDVDLDNDLDDNISTYIKSDC 274

Query: 107 EGTWIP 113
           EGTWIP
Sbjct: 275 EGTWIP 280

[Close]

BLAST of Cmc05g0135121.1 vs. NCBI nr
Match: TYJ99651.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 47  SDVRWSIVLTPPQRDCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDC 106
           SDVRWS+VLTPPQRD E + NDDEL D +L CEG+P+DMP++D  NDLDD+ISTY++SDC
Sbjct: 390 SDVRWSVVLTPPQRDFEDRYNDDELGDTILRCEGIPNDMPDVDLDNDLDDNISTYIKSDC 449

Query: 107 EGTWIP 113
           EGTWIP
Sbjct: 450 EGTWIP 455

[Close]

BLAST of Cmc05g0135121.1 vs. NCBI nr
Match: KAA0026061.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 47  SDVRWSIVLTPPQRDCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDC 106
           SDVRWS+VLTPPQRD E + NDDEL D +L CEG+P+DMP++D +NDLD+++S YV+SDC
Sbjct: 468 SDVRWSVVLTPPQRDFEDRYNDDELGDTILRCEGIPNDMPDVDLNNDLDENVSMYVRSDC 527

Query: 107 EGTWIP 113
           EGTWIP
Sbjct: 528 EGTWIP 533

[Close]

BLAST of Cmc05g0135121.1 vs. ExPASy TrEMBL
Match: A0A5D3BHU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00160 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 7.9e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MVVDVTGGERTSGGRYDRRRHSGDLRRSTRNAASRRRDPLEMGRRSSDVRWSIVLTPPQR 60
           MVVDVTGGERTSGGRYDRRRHSGDLRRSTRNAASRRRDPLEMGRRSSDVRWSIVLTPPQR
Sbjct: 1   MVVDVTGGERTSGGRYDRRRHSGDLRRSTRNAASRRRDPLEMGRRSSDVRWSIVLTPPQR 60

Query: 61  DCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDCEGTWIPK 114
           DCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDCEGTWIPK
Sbjct: 61  DCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDCEGTWIPK 113

[Close]

BLAST of Cmc05g0135121.1 vs. ExPASy TrEMBL
Match: A0A5A7T0W5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00280 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.4e-24
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 47  SDVRWSIVLTPPQRDCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDC 106
           SD RWSIVLTPPQRD E QSNDDEL DI+LHC+GVPSDM NIDG N+LD+++STYV+SDC
Sbjct: 499 SDARWSIVLTPPQRDYEDQSNDDELGDIMLHCQGVPSDMSNIDGGNNLDENMSTYVRSDC 558

Query: 107 EGTWIP 113
           EGTWIP
Sbjct: 559 EGTWIP 564

[Close]

BLAST of Cmc05g0135121.1 vs. ExPASy TrEMBL
Match: A0A5A7UHP5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00980 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.3e-22
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 47  SDVRWSIVLTPPQRDCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDC 106
           SDVRWS+VLTPPQRD E + NDDEL D +L CEG+P+DMP++D  NDLDD+ISTY++SDC
Sbjct: 215 SDVRWSVVLTPPQRDFEDRYNDDELGDTILRCEGIPNDMPDVDLDNDLDDNISTYIKSDC 274

Query: 107 EGTWIP 113
           EGTWIP
Sbjct: 275 EGTWIP 280

[Close]

BLAST of Cmc05g0135121.1 vs. ExPASy TrEMBL
Match: A0A5D3BLQ2 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00290 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.3e-22
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 47  SDVRWSIVLTPPQRDCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDC 106
           SDVRWS+VLTPPQRD E + NDDEL D +L CEG+P+DMP++D  NDLDD+ISTY++SDC
Sbjct: 390 SDVRWSVVLTPPQRDFEDRYNDDELGDTILRCEGIPNDMPDVDLDNDLDDNISTYIKSDC 449

Query: 107 EGTWIP 113
           EGTWIP
Sbjct: 450 EGTWIP 455

[Close]

BLAST of Cmc05g0135121.1 vs. ExPASy TrEMBL
Match: A0A5A7SPD6 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00520 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.9e-21
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 47  SDVRWSIVLTPPQRDCEGQSNDDELEDIVLHCEGVPSDMPNIDGSNDLDDSISTYVQSDC 106
           SDVRWS+VLTPPQRD E + NDDEL D +L CEG+P+DMP++D +NDLD+++S YV+SDC
Sbjct: 468 SDVRWSVVLTPPQRDFEDRYNDDELGDTILRCEGIPNDMPDVDLNNDLDENVSMYVRSDC 527

Query: 107 EGTWIP 113
           EGTWIP
Sbjct: 528 EGTWIP 533

The following BLAST results are available for this feature:

BLAST of Cmc05g0135121.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040428.1	1.6e-57	100.00	uncharacterized protein E6C27_scaffold35G00600 [Cucumis melo var. makuwa] >TYJ98...	[more]
KAA0037124.1	1.5e-23	80.30	transposase [Cucumis melo var. makuwa]	[more]
KAA0054810.1	1.1e-21	72.73	transposase [Cucumis melo var. makuwa]	[more]
TYJ99651.1	1.1e-21	72.73	transposase [Cucumis melo var. makuwa]	[more]
KAA0026061.1	1.2e-20	69.70	transposase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0135121.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc05g0135121.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHU1	7.9e-58	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T0W5	7.4e-24	80.30	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00280 PE...	[more]
A0A5A7UHP5	5.3e-22	72.73	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00980 PE...	[more]
A0A5D3BLQ2	5.3e-22	72.73	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00290 PE...	[more]
A0A5A7SPD6	5.9e-21	69.70	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00520 PE...	[more]

BLAST of Cmc05g0135121.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..45

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc05g0135121	Cmc05g0135121	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0135121.1-exon	Cmc05g0135121.1-exon-CMiso1.1chr05:16953311..16954018	exon
Cmc05g0135121.1-exon	Cmc05g0135121.1-exon-CMiso1.1chr05:16954767..16955322	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0135121.1-three_prime_utr	Cmc05g0135121.1-three_prime_utr-CMiso1.1chr05:16953311..16953810	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0135121.1-cds	Cmc05g0135121.1-cds-CMiso1.1chr05:16953811..16954018	CDS
Cmc05g0135121.1-cds	Cmc05g0135121.1-cds-CMiso1.1chr05:16954767..16954900	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0135121.1-five_prime_utr	Cmc05g0135121.1-five_prime_utr-CMiso1.1chr05:16954901..16955322	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc05g0135121.1	Cmc05g0135121.1-protein	polypeptide