Cmc04g0121401.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0121401.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	BnaA03g55300D protein
Location	CMiso1.1chr04: 36431684 .. 36439474 (+)
Sequence length	2943
RNA-Seq Expression	Cmc04g0121401.1
Synteny	Cmc04g0121401.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAGTTGTGTTTATACTTAATTATAACAAATGCAAATGACTACTTCTTGACAACGCTTGAACACATCATCAATCAACCAATCTCATCTTCTTCTCTGCATGGGTTCTTATCAATCTACCTCAGCAGCCATAAACTAATATCACGGAATTTGGAGCTCTTCAAAATCCCACTTTCTCAACACTTTCTTCCCAAACCTGGTCTAATGTTGGATGTGTTTCGAAGCTGGAGGAAAATTTTGCTTCAGCTCCGACCAACTGAAAGCTTACCTATCGGAGAATGAAATTCGCTGGAGAATTATCCTGTTTCAGTTCAGAAAGAAGTGGAATTCATTGGCGTAACTGGTAATTGTAGGTCTTCTGACTCTAAGAAGGAGAACCAATTAAGAAATCGTGAAACTTGTGATGGGGTACCTGACAACAAGAAGTGCCGGGACCAGAAGAAGTTGGTTGCTTGTGTCCAAAGTAATCTGATTGGTAAACACCAAGTTTCTTTTGATTTTTACCATCCTTTTCCGTTTTCTTCCGACGTGGATTTTGGTTCCAGTTTCTGCTACTGGATTTAATATTCCTTGAATCCCCCCAACTCCAGATTATTATTGAAAGTTATACTGGGAACGAGGCAGTTATTTGATAGCAAAGGTCCATCCTCTATATTTTGGAATTGAGTTGACATATAATATCCGATGTGAAGCTTCAAATAGTTAACATGTGCTAGGAGCATGCCAGTAATGATTTTTCCTTTCTTAATTCAATAACATCACATCATAATCTTAACGATTTTTAAGTTTTGGTCTACAGAATCATTTGATCGAATTTCACTATACACAAAGGTTTATTATACGGTATCTGGTAGCTTAATTATTTGTTTTCCTGAGTAAATTTCCAACGAGTATTTAAACATAGGAAAGGTCTTAGATCTCACTTTTCCTTGCCATGACAAGGGAGCAAGTTTTTGTTAGTTTACCATTGAGGAAGTAAGAAAAGGCAGGAAAAAATGAGTACAGATTCTTCTCTTAAAAGTGCTTTCTCAATAAAAAGTTGTTTTGTCTCCTTCCTTTTGTGCTAATTTCTTCAACAGAGGATGTGGGAGACACAAATAATGTAAACCCTAGAATCCAAGAATCCCGAAGTCATCTGAGAAACTCAAGAGGAGTTTAGGGATTGATGTTAGTTGGAGAAAAATGGATTAAGATTGATGCTTTAAGAAAGATCGGAAAAGAATTTTATTAAGATTTGATGGTTAAGATCAAGTGTTATGGAAGATGTGTCATAGTTTTTAAGAAAAGTGTCATTCAAGCTAAGGAATGTTTGGAAATTGGCTAGGGGCTGTTTGCCCCTAGGATTAGAGAGCAGTGGCTCCATGTTTGGCCCTAGTATTGTCAGATCCTAGTATTATGATAATACTTGTTCTCACTTCCCTTCCTCCTCTTCCTCACACTCCCTCTCTCACTAAGCTCAAAATACCTACCAAGTAAAAGTATAAGGCCAAGCCAAAGTGGAAATCCCAATAGCAGCCACTACAAAAAGAAGCAATGCCGACAAAAGAGGAGATAATAATCTACACCCTAAACTATAATCCTTAAACTATTATAATCTTCGGACTATTATAAGTCATTCTTCACCTCAAATGCCCCCTAAGTGTTTAACATACTCATAGGCTACCAAGAAAGTCATAAGAACCTCCAAAGACATAAGTTGAGCGGCCAAGAAAGATTATTTTGGTATGGTCGAGAGGTGTCAAGATAACCTCTATAGGACAAGACTAGGCGGCCAAGGGCATGCTAGGTGAGCAAGACATTTTGGCTAAAAGATTAGCTAGGCGAGGAAGAAGTGCTAACTAGGCGTTTCGGAAGTGTAAAAAAACCTCTAAAGGGGTTAGCATGTGGTCCTAGCTATGCGGCCAAAAGGTTATGCAGCCAAAAGGGCCATGCGGCCAAAGGGGTGTCATGCAGCCAAGGACATGTCACCAAATGCTAATCTTGGAACAGCATGTTTTGTTAAAGGTATCATGCTATGATGGAGAGGTTAGGGGAGCAAGAGGAAGTCCTAGGTGCTCTAGGCAGCAAGAATTTACTAAAGAACCCTTATGAAAAAAGGGGTAGGCGGCCAAAGGATGGCCTAAGCAATATGAGCTAAGAGATGAGATGGAAAACAAGTGGACAACATGCAAGATACCTAAGTTTTTCCAAGTAGGAGGTGTAAGGTAAGCAGCATGAGGTGGGAAGTGCGGTATGGGGGATAAGAGGTGTCAATCAAGGAGAATGCAAGGATCACTATATAAAGAAAATTTTGGATGAATGGTATTCACAAACCACTCGTGCCAATTGGGTAATTCCACTTAGAAAATCTCCTAATTAAGTCTAGTATTAAGGGAAGGGCTTCCAAGAAGAAAAGACACCGAGAAGGAAGGCATTGAAGTGAAGGAAGACTCAAAGGTCATTTTTTAAGGAAAATTGGGAAGTGCTGAGTATTTTGGAGCTACATAACTCAATACTTGGAATTTTTTGCTGAAATCTTGATTTGAGTTATAGATTTTAAGTTATTAAGCTCCAAAGTCAAGTTAAGTTTGTGGTCGAAAATCAAATTTCTGGGCAAGGCTAAGGGTGGGCCGAGTGCCAAGATGACAGGGAAAGATGGTCATGCAAATTAGGCATTAGAAGTTATTTAGGCCTTAGCTCATGCAAGGAGCATGTCCACCGCATGGCCAGGCGGCATGAGGCGCGTGCCTAGGCCATTCAAGGTGTCATGCGCACATAGACAAGGAAGTCAAGCGCAACTGAGGACACAGAAAGCACACGGCATGCATGAGGCACGCATCGCATGCGCGAAGCATGCATCATGCCATGGTTGCGAGGTTGGCATGAGGGCAAGCCTCTAGGCCTTCGCACGTGCGTTCAACTTGCCACCCATGCCCTGTACACCAGCCAATCCACATGACAGTTTTGGACATGTTTTGATGTTTTGGCAATTTTTGCTTGGAGTTTTGGTATCTTTTGATTATTAGGGATGAAATGGAGTATAAATAGCCTATTTTGAAGAAAAGTGAAGTTTGGTGAATTTTTCCAAGATAAGGAGAAAAGCTTCAAGTTTGTGAGTGAAACTTGTTTTAAAAGATGTTCATCAAATATGATTTCAAGTTCCACAGGCAATAGCTTGTGAATCACTTGCATTAAATGATTTCTGAGGATATTTCTAAGCTTGATTTATTATGTATAATTTCAAGAGCCCAATGCAGAAAAATGCATGTTGGGCCTTTGAAACAGTTCTAATCCTTTTGATAATAAGCTTGATTTACCAAGTTTTTTTCTCTCCTCGCTCACCTCTCTCTCTATATGTGTATGTGTATGTATGTGTATATATTAGGCACTGTGAAGGATGAAAAGTATAATTAAAATGACTGCAGTGATACTGTTAAAAGTGTGTGATGTCAGATGTGATGCTTAACATGAAAAAAGAGTATTGTTGGTTGATAACTAGTCATGCACCTTTACGTTGGTAATTAGAGCAAGTTCTAATTTCTGATGAAAATGGTATTGTGTAATTCAAATCCTGTGGGTCGGCACTAGCCTTCTCTAAGTAGAGGAACATGGTAGTTTAATGAAAGAAATTAGTAGTTATTGAGAGCAATCATTAATATTTTTTAATAGCTCTTTTGTCAAGAAAAAGAAAGGCACCAAGCATTCACCCCTCTGGATTTTCTCCCTTCATTCCCACTGATCTAGGTAATTATGTTTTGAAATATCTATCACCAGAATAAAACTCTTGAAACCTTCTTGTTTTATCTAAATATTGTATCATCCCAATATTATGAGATGCCTTGTGCATAGTAAGATATTTACTTCCTATCTCTGGCCCAAATTCAATATTTGACTTGAATTTTATGTGGAACAACGAGAAAAGGGAAGTAAATTCCTGCAACTGTGTAGAATTTGATAAAAAAAGAGCACGTTTTCTCATAGTCAACCATGAAGTGGTAGCATAATAAAGTTTTATGCAGAATTTTATAGAAAGGAGCATGTTTGAGATAGAACGGAAATATCACATCCCCAATAGTCCGATTTTGAAAATCTAAAACCCTAATTATGGATTTTTCAACCAGGAAAAAGATGTAAATATAAGGTAATTATGAGTTTCTTAAACTGATAGGGTTGCTTAATTTCTGATATATCATATTGTCTAATATTAATAGTTAATGAGAATACCCTTAGCCCTTATGCTTGCATTTTTTTTCCTTGCTGAAAAGTCCAGAAATTGGGCTGTTCTAGTCCTGAACGAAGGAGAAGATACGTTAGAAGTGAATGCCACCAGAGGAAACTTTTGAGAGGGGCTTAAGATTTTAAAACTTCAACGAAAAGGGTAGGGGCTTGTCATTTCAACCTACTAATCTTTCCCACATGGCACTTGGAAGCCATGTGTGTCTTTGATTCACCTGTTTCTCTATTCTAACTATATTCTTTTTTTTAGATAAGAAACAATTTCATGATTGAATGAAATATCCAGAAAGTATTTTCTTTACCACAGATAATGTATTCAATTAGACTTCATGCATCAAATGCAGGCAGCTTCTAGAATTTTTGTTTTTCCACTTCTCAAACGAATGTTTGCACGTCTTACAGTTCAAAACAGATTCCTTACTTCTAAGATAGTTTAGTTATGTATCAAATTTTTGTCATGATAATTTTTTGTGGTCGAGTGGTTGAATTCGTTAATTTTATTGTGCACGTGTCCTGTGAAAATATTAAAACAAGTTCCAACTATTTTCAATTTATTACAGTTCTTTGAAGATCTTACTCTTTGTTTGTTTGACGAGCTTGACTCTGCCAGGATCTTTGAAGTCCTTATTCTAGTTCGTCTGTTACAAACTTATAAGTAACTCACCGTTGCATCCTACCATTTGAGTATCTGGAATGTTTTGGAGTCATTAGTAATCCGCTGTGCCTGAACACTAAGAAATAGAAATTAGAGTTTTCTACTCTCTTATTTTTCACTTTTCAGATCACCATTCCTCAGACGACTGATAATAAGCAGGAAGCTGATATTAGATGATGGAAATGGAGAGTGCGTGCTTTACACAAGACCTCTTGTATCTGGAGAAAACTTTTTCTGCGTCTACCCTCATTAGACCAGCTAGCAACACCAGTAACCGGTGCGTATTTCCTAATTATTACAGTCCTAATCTTTGAGGTTCTTGGGCTTGCTGCAAGTTTAGTAGGATGCAAGCAGGTGGTATCCCATATCAAGAGCTTGAAATGGCAGTGCCAGAATCTTCCTCGGCTTGAAACGGCTGAAGGTTGGGATGATGATTGGGATGAATAAAAATTCTGTGAAATCACCAGGGAGGCCTCATATTGGGAACATTTCAGCTAATGGCCTTACTGCTAGGTCCAACAAAGATGGGCGAGAGAATGATTGGGATGTTTAGTTAATGAAACAGGGTGATAAGAAAACAAACTTCTGGTCTATCGACAAACTGGAAGGCAGGAAGAACAACAACGCGAATCATATAAAGTTGCCCTGAAGTTTCCCTAGTTGAGTGTAACTGTAAACCTTCTTCCTACATCTGATTAGGTTATAGAGTTTGTACTTGTAGCCGTCGCATATTGGGTCAGAAGCCATAAAGCTGTTTCATACCAAATTTTGGGTTTGTTTTGGTGCGATGTAGCATGCATCATAGCTTTTTGTGTCTTTTTTGAATTTTTACTTCTTTAGATAGCAGTTCCAATTTTTTCTTTATGATAGCTTTACATCAAATAAATGTTCATGCGAGCTTTCAAATTATGATTGGGTTTGCCATTGCAAAACTTTGGTAAGAGAACCATAAATGATACAGTACACATGCTCATGTGCGTGCGTCCGTATCTTTTTGGGAATGGGGAACAGTTTCTCTCTCTATGGTTACTGTGTAATAATTTTGAATACACTTCTGAATTATATTTTTTCTATTGATTACTGGTAAGCATTACCTCTAATGTATTGTCACGCCTGAATTTTATTTTTACCTCCGCGTGCTTCTTTTTCTTTTTATGCATGTCGGGAGTAATTGTGAAACTGCTTTGTTGTCTCTTACTGAAGCAAAAGGGCAGAGAAGGCCGATTTAATAATTCTGTTTCCTACGTTATTCTGTCTTTTAAAGTTTTGATTTTTTTTTTTTTTTTGTTTCTTAATTTTTGTTTCCAAATAAACAATGGGTTTTACTTGAACTGCTTACAGGATTCTTTCCTATATATACACTTTTTATTATTATGGATATGTTATGTATTGCTACCGCTTCTTCTCCATTCGTTCACTTATGGATGATTCCTTTTATGTTACTGCTTCTGCTCTTGGCAATTACGCATTTGGATTGATTATTACGATACATAATAACTTCTAACATGATTTTGAACAGTTAGTTTCTTTAACTTAAATCTTTGATTGCCCCTGCATTAAGGAATCAAGATAAAGATAAAGGAAGAGGAATAACGATGGGTCCCCACATGAAATGACATCATATGGAGAAGAAAAAAGGTGTTGCTATTTTAAAGGGTTGAAAGTGCCAAGGAGGACCCGCATGTGAATGGGGGTATTGATTATATTGAAGGCATTTTGAATTGGGTTCACTGTTCACTAGGTATGTCAGGTCTGCTATCATGTAATTATCTAAAACTTGACGTCTAAGTCTTAATTATGAAACATGGCTCCCAGGGCGGGGGGCTTACATTCATTGTGAGATGTGGGAAGCTGCAATGGGAAGCTTTCCCATGAAATAGTGAGAATGAGTTGGGCATATCATTACCATCGCAATAATAGGAGTGCTAAAGATAGCAACCCATGCCCATCTCAATCAAGTGTAAATAAATAAAGCAGAAGTATAGTTTTGTTTGTTTTTACTGTAGAATCATTTATGTTAAAAGCAAAGGTATCAATCCTTTTTAACACATTTCTCATGTTTTGGCAGATTTGGAAATGGTGCAAACTGCTGAGTACTAGACAGATTTTCCATTGGGCACCTATCTGCATGCTGCATCATTGACGTACATTCTAAATTCTATGGACAAAGAATATGGCATAGGAAACAAAAACATAACCAAGCAAAAGATAGTTTCACGCCATGTTTGAAGGGATATACTATATGGAATACTATGTAACTCTTCATGGTGAAATGAATATGGTGTGGTGGAACTTTAAGGAAATGAATAAAACTACAAGAAAAATTACAGTAAAATGTTGTAAATCAACTCGATTGAAGTTGAAAAAGCATTTGATTCTCCATGTAGTTCATCTTCTTTCTCTTTTTGTGAAAACAAATCGAGCAGATTAGCTTCACCCAAGGAATCGCAAGTATCCATTTTGCTCGTTAGTTTCATTCCAACTCCTCATCAACTTCAGAGGGAGATTGGATCAACTCTAATATATTGACAACCTCATTCATGTCTGGTCTGTTAGATGGTACTTGAGATGCGCATATTAAACCCAGTTTCATTACAGGAATCGCTTCTTCAACACGGAAGTTCAGTTGGAGCCTCTCATCAACACATCGTTCCACTGTCCCTTCATCCAGAGCTACCCTCACCATATCACAGAGAACTATAACATCATCTTCCATGTACTCAACGGGTCTTTTTCCTGTCACCACTTCCAGAACCAAGATGCCAAAACCATACACATCACACTTTTCGGTTATAGTCACTGTCTTGCAGGCAAACTCCGGAGCCATGTATCCTAAAGCGCTTTGGATTTTACTGCTTAAGATGCAACGGTCCAACATTGGCAATAACATTGCCAACCCATAGTCCCCTACTTTTGGTTTC

mRNA sequence

ATTTAGTTGTGTTTATACTTAATTATAACAAATGCAAATGACTACTTCTTGACAACGCTTGAACACATCATCAATCAACCAATCTCATCTTCTTCTCTGCATGGGTTCTTATCAATCTACCTCAGCAGCCATAAACTAATATCACGGAATTTGGAGCTCTTCAAAATCCCACTTTCTCAACACTTTCTTCCCAAACCTGGTCTAATGTTGGATGTGTTTCGAAGCTGGAGGAAAATTTTGCTTCAGCTCCGACCAACTGAAAGCTTACCTATCGGAGAATGAAATTCGCTGGAGAATTATCCTGTTTCAGTTCAGAAAGAAGTGGAATTCATTGGCGTAACTGGTAATTGTAGGTCTTCTGACTCTAAGAAGGAGAACCAATTAAGAAATCGTGAAACTTGTGATGGGGTACCTGACAACAAGAAGTGCCGGGACCAGAAGAAGTTGGTTGCTTGTGTCCAAAGTAATCTGATTGATCACCATTCCTCAGACGACTGATAATAAGCAGGAAGCTGATATTAGATGATGGAAATGGAGAGTGCGTGCTTTACACAAGACCTCTTGTATCTGGAGAAAACTTTTTCTGCGTCTACCCTCATTAGACCAGCTAGCAACACCAGTAACCGGTGCGTATTTCCTAATTATTACAGTCCTAATCTTTGAGGTTCTTGGGCTTGCTGCAAGTTTAGTAGGATGCAAGCAGGTGGTATCCCATATCAAGAGCTTGAAATGGCAGTGCCAGAATCTTCCTCGGCTTGAAACGGCTGAAGGTTGGGATGATGATTGGGATGAATAAAAATTCTGTGAAATCACCAGGGAGGCCTCATATTGGGAACATTTCAGCTAATGGCCTTACTGCTAGGTCCAACAAAGATGGGCGAGAGAATGATTGGGATGTTTAGTTAATGAAACAGGGTGATAAGAAAACAAACTTCTGGTCTATCGACAAACTGGAAGGCAGGAAGAACAACAACGCGAATCATATAAAGTTGCCCTGAAGTTTCCCTAGTTGAGTGTAACTGTAAACCTTCTTCCTACATCTGATTAGGTTATAGAGTTTGTACTTGTAGCCGTCGCATATTGGGTCAGAAGCCATAAAGCTGTTTCATACCAAATTTTGGGTTTGTTTTGGTGCGATGTAGCATGCATCATAGCTTTTTGTGTCTTTTTTGAATTTTTACTTCTTTAGATAGCAGTTCCAATTTTTTCTTTATGATAGCTTTACATCAAATAAATGTTCATGCGAGCTTTCAAATTATGATTGGGTTTGCCATTGCAAAACTTTGGTAAGAGAACCATAAATGATACAGTACACATGCTCATGTGCGTGCGTCCGTATCTTTTTGGGAATGGGGAACAGTTTCTCTCTCTATGGTTACTGTGTAATAATTTTGAATACACTTCTGAATTATATTTTTTCTATTGATTACTGGTAAGCATTACCTCTAATGTATTGTCACGCCTGAATTTTATTTTTACCTCCGCGTGCTTCTTTTTCTTTTTATGCATGTCGGGAGTAATTGTGAAACTGCTTTGTTGTCTCTTACTGAAGCAAAAGGGCAGAGAAGGCCGATTTAATAATTCTGTTTCCTACGTTATTCTGTCTTTTAAAGTTTTGATTTTTTTTTTTTTTTTGTTTCTTAATTTTTGTTTCCAAATAAACAATGGGTTTTACTTGAACTGCTTACAGGATTCTTTCCTATATATACACTTTTTATTATTATGGATATGTTATGTATTGCTACCGCTTCTTCTCCATTCGTTCACTTATGGATGATTCCTTTTATGTTACTGCTTCTGCTCTTGGCAATTACGCATTTGGATTGATTATTACGATACATAATAACTTCTAACATGATTTTGAACAGTTAGTTTCTTTAACTTAAATCTTTGATTGCCCCTGCATTAAGGAATCAAGATAAAGATAAAGGAAGAGGAATAACGATGGGTCCCCACATGAAATGACATCATATGGAGAAGAAAAAAGGTGTTGCTATTTTAAAGGGTTGAAAGTGCCAAGGAGGACCCGCATGTGAATGGGGGTATTGATTATATTGAAGGCATTTTGAATTGGGTTCACTGTTCACTAGATTTGGAAATGGTGCAAACTGCTGAGTACTAGACAGATTTTCCATTGGGCACCTATCTGCATGCTGCATCATTGACGTACATTCTAAATTCTATGGACAAAGAATATGGCATAGGAAACAAAAACATAACCAAGCAAAAGATAGTTTCACGCCATGTTTGAAGGGATATACTATATGGAATACTATGTAACTCTTCATGGTGAAATGAATATGGTGTGGTGGAACTTTAAGGAAATGAATAAAACTACAAGAAAAATTACAGTAAAATGTTGTAAATCAACTCGATTGAAGTTGAAAAAGCATTTGATTCTCCATGTAGTTCATCTTCTTTCTCTTTTTGTGAAAACAAATCGAGCAGATTAGCTTCACCCAAGGAATCGCAAGTATCCATTTTGCTCGTTAGTTTCATTCCAACTCCTCATCAACTTCAGAGGGAGATTGGATCAACTCTAATATATTGACAACCTCATTCATGTCTGGTCTGTTAGATGGTACTTGAGATGCGCATATTAAACCCAGTTTCATTACAGGAATCGCTTCTTCAACACGGAAGTTCAGTTGGAGCCTCTCATCAACACATCGTTCCACTGTCCCTTCATCCAGAGCTACCCTCACCATATCACAGAGAACTATAACATCATCTTCCATGTACTCAACGGGTCTTTTTCCTGTCACCACTTCCAGAACCAAGATGCCAAAACCATACACATCACACTTTTCGGTTATAGTCACTGTCTTGCAGGCAAACTCCGGAGCCATGTATCCTAAAGCGCTTTGGATTTTACTGCTTAAGATGCAACGGTCCAACATTGGCAATAACATTGCCAACCCATAGTCCCCTACTTTTGGTTTC

Coding sequence (CDS)

ATGTACTCAACGGGTCTTTTTCCTGTCACCACTTCCAGAACCAAGATGCCAAAACCATACACATCACACTTTTCGGTTATAGTCACTGTCTTGCAGGCAAACTCCGGAGCCATGTATCCTAAAGCGCTTTGGATTTTACTGCTTAAGATGCAACGGTCCAACATTGGCAATAACATTGCCAACCCATAG

Protein sequence

MYSTGLFPVTTSRTKMPKPYTSHFSVIVTVLQANSGAMYPKALWILLLKMQRSNIGNNIANP

Homology

[Close]

BLAST of Cmc04g0121401.1 vs. NCBI nr
Match: CDY67471.1 (BnaA03g55300D [Brassica napus])

HSP 1 Score: 60.5 bits (145), Expect = 6.1e-06
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 2   YSTGLFPVTTSRTKMPKPYTSHFSVIVTVLQANSGAMYPKALWILLLKMQR 53
           YSTGLFP+TTS TK+P PYTSHFSVI+TV  AN  A+  + LW L+  + R
Sbjct: 60  YSTGLFPITTSSTKIPNPYTSHFSVILTVRHANFRAV--QRLWSLIFGVPR 108

[Close]

BLAST of Cmc04g0121401.1 vs. NCBI nr
Match: VDC71120.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 2  YSTGLFPVTTSRTKMPKPYTSHFSVIVTVLQANSGAM 39
          YSTGLFPVTTS TK+P PYTSHFSVI+TV  AN  A+
Sbjct: 60 YSTGLFPVTTSSTKIPNPYTSHFSVILTVRHANFRAV 96

[Close]

BLAST of Cmc04g0121401.1 vs. NCBI nr
Match: VDC58443.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 2  YSTGLFPVTTSRTKMPKPYTSHFSVIVTVLQANSGAM 39
          YSTGLFPVTTS TK+P PYTSHFSVI+TV  AN  A+
Sbjct: 59 YSTGLFPVTTSSTKIPNPYTSHFSVILTVRHANFRAV 95

[Close]

BLAST of Cmc04g0121401.1 vs. NCBI nr
Match: VDC69426.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 54.3 bits (129), Expect = 4.3e-04
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 2  YSTGLFPVTTSRTKMPKPYTSHFSVIVTV 31
          YSTGLFPVTTS TK+P PYTSHFSVI+TV
Sbjct: 60 YSTGLFPVTTSSTKIPNPYTSHFSVILTV 88

[Close]

BLAST of Cmc04g0121401.1 vs. ExPASy TrEMBL
Match: A0A078JP12 (BnaA03g55300D protein OS=Brassica napus OX=3708 GN=BnaA03g55300D PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 2   YSTGLFPVTTSRTKMPKPYTSHFSVIVTVLQANSGAMYPKALWILLLKMQR 53
           YSTGLFP+TTS TK+P PYTSHFSVI+TV  AN  A+  + LW L+  + R
Sbjct: 60  YSTGLFPITTSSTKIPNPYTSHFSVILTVRHANFRAV--QRLWSLIFGVPR 108

[Close]

BLAST of Cmc04g0121401.1 vs. ExPASy TrEMBL
Match: A0A0A9R115 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1   MYSTGLFPVTTSRTKMPKPYTSHFSVIVTVLQANSGAM 39
           MYSTG+ PV  SR +MP PYTSHFSVI TV  ANSGAM
Sbjct: 65  MYSTGVLPVRISRIRMPNPYTSHFSVIFTVRHANSGAM 102

[Close]

BLAST of Cmc04g0121401.1 vs. ExPASy TrEMBL
Match: A0A0A9IHC8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1   MYSTGLFPVTTSRTKMPKPYTSHFSVIVTVLQANSGAM 39
           MYSTG+ PV  SR + P PYTSHFSVI TVL ANSGAM
Sbjct: 65  MYSTGVLPVRISRIRTPNPYTSHFSVIFTVLHANSGAM 102

[Close]

BLAST of Cmc04g0121401.1 vs. ExPASy TrEMBL
Match: A0A0A9R2F1 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  MYSTGLFPVTTSRTKMPKPYTSHFSVIVTVLQANSGAM 39
          MYSTG+ PV  SR + P PYTSHFSVI TVL ANSGAM
Sbjct: 1  MYSTGVLPVRISRIRTPNPYTSHFSVIFTVLHANSGAM 38

[Close]

BLAST of Cmc04g0121401.1 vs. ExPASy TrEMBL
Match: A0A3P5ZE36 (Uncharacterized protein (Fragment) OS=Brassica campestris OX=3711 GN=BRAA05T20834Z PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 2  YSTGLFPVTTSRTKMPKPYTSHFSVIVTVLQANSGAM 39
          YSTGLFPVTTS TK+P PYTSHFSVI+TV  AN  A+
Sbjct: 60 YSTGLFPVTTSSTKIPNPYTSHFSVILTVRHANFRAV 96

The following BLAST results are available for this feature:

BLAST of Cmc04g0121401.1 vs. NCBI nr


Match Name	E-value	Identity	Description
CDY67471.1	6.1e-06	60.78	BnaA03g55300D [Brassica napus]	[more]
VDC71120.1	3.0e-05	75.68	unnamed protein product, partial [Brassica rapa]	[more]
VDC58443.1	3.0e-05	75.68	unnamed protein product, partial [Brassica rapa]	[more]
VDC69426.1	4.3e-04	86.21	unnamed protein product, partial [Brassica rapa]	[more]

BLAST of Cmc04g0121401.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0121401.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A078JP12	2.9e-06	60.78	BnaA03g55300D protein OS=Brassica napus OX=3708 GN=BnaA03g55300D PE=4 SV=1	[more]
A0A0A9R115	1.1e-05	73.68	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9IHC8	1.1e-05	73.68	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9R2F1	1.1e-05	73.68	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A3P5ZE36	1.5e-05	75.68	Uncharacterized protein (Fragment) OS=Brassica campestris OX=3711 GN=BRAA05T2083...	[more]

BLAST of Cmc04g0121401.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0121401	Cmc04g0121401	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0121401.1-exon	Cmc04g0121401.1-exon-CMiso1.1chr04:36431684..36432158	exon
Cmc04g0121401.1-exon	Cmc04g0121401.1-exon-CMiso1.1chr04:36436680..36438294	exon
Cmc04g0121401.1-exon	Cmc04g0121401.1-exon-CMiso1.1chr04:36438622..36439474	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0121401.1-five_prime_utr	Cmc04g0121401.1-five_prime_utr-CMiso1.1chr04:36431684..36432158	five_prime_UTR
Cmc04g0121401.1-five_prime_utr	Cmc04g0121401.1-five_prime_utr-CMiso1.1chr04:36436680..36438294	five_prime_UTR
Cmc04g0121401.1-five_prime_utr	Cmc04g0121401.1-five_prime_utr-CMiso1.1chr04:36438622..36439267	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0121401.1-cds	Cmc04g0121401.1-cds-CMiso1.1chr04:36439268..36439456	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0121401.1-three_prime_utr	Cmc04g0121401.1-three_prime_utr-CMiso1.1chr04:36439457..36439474	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0121401.1	Cmc04g0121401.1-protein	polypeptide