Cmc04g0117281.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0117281.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	60S ribosomal protein L24-like
Location	CMiso1.1chr04: 34516489 .. 34518719 (-)
Sequence length	878
RNA-Seq Expression	Cmc04g0117281.1
Synteny	Cmc04g0117281.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAAGCAAGAGTCAGGCCCAAAAGACTATCCAACAATTCCAATATAAGCTACCGATTCGGCAGGGTTTTGTCTCTAGGGTTTCATCGTCAACAGCGCGGCAGCAAGTTAAGCCTCACCAGCGGCCATGGTTCTCAAGTTCGTCAAATCCTTCATCTCTGTCTTTTTTTTCTCTAGTTAGATCTCGTTTTCATTTTGATTACATGTTTTCCGTTTTCATTTTACATGTCAACGTTTTTTCCTGGTTCAGTTTTTTCATTTGTACCTCCAATGCTAGCGATGAAGAATTTTAGGGATTTGCGTATTTTTGATTGAGGAATACGAAAAATGACCCAATATTTGGGATTGGCATCTGTTGGGGGTTTAGTAATCTGGTTGGAAGGAATTAGTCACAGGGCTGGTAATTCAATTAACGGGGAAGATGTAGATGTAAAGTTGTTTGCTTCTAGGAAGCATTGCTCTAGTTTATTGTTCGAGCAAGCGAGTGCTTTGGATAATTGTTTCATGATTACGTGCTTGAACTAAGCTATGAAAGTTTCGATATTAATGTGCTCGGTCTCGTTCATGAACTCTGTATGTGGGAAAAGAATTTCATGAATTCTGCTCTTAATTGTTTGATATTGGGCTTTTCAGGACCGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATTAGATTCGTCAGGGCTGATTCTCAGGTGATTTTGATTATACCATGTACTGGACGTGTTTCGAGATGAATGGATGAATTTCATTCTTTACTAATTATTAAAATGTTTTGTGAATTTTGGTTTGCTCTAGTTAACCTGAACCTCTTTGACTTGAATGGAGTTTTGGAGGCTTATTCTTTTATATATTTGAATCATTCTTACTGATTTTCCCCTGTTTATTTGGCCTTTTTCTTTATCAATCTGTTAGGTGTTTCTCTTTGCCAACTCGAAATGCAAGAGGTATTTCCACAACCGGTTGAAGCCTTCGAAGCTTACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGTAATATTAAGATTTTCTATGGACTTTGTTTAGTTATTTTTTTTTGGTTCATTTTTCTTGATTTGATGTCAAGATTATTTGGTGAATATTGTCTTTAAATATACCATATACAATCCCCATCGCGTGGGTAAAGATCATCCTCATCATCCGAGCTTTGATTCTACCATAAATTTTAAAACAATCTGGGGCTTGCTAATATGAGTCATATTACTGTTATTTGTGTCGCAACAAAAACAATGACTTGATCCAAACCTAGAGTTTATGGTATTGAGCCTAGTGGTAATTTAACAGCAATAATGAGGCATGACATAGACGAAGTTGTCTTTATCATTGCTATTTTTATGTTATAAGTATTAACAGATTTAAGTTCCAAGTTTTATGATTAATCAAAATGATTTCCTAGTCCTCAATTTGCAAGAAGTGTTAAAGTTTTAATAAATCATCCCTAACCCTGTGTCTTGAGCTATTCTCTGTGAATGCCGTTTTGTGTGTTTGGTGTGGGCTCATCTTTTATCTAATCTTATTTTGATATGTGTAGGATATTGCTCAAGAGGCTGTGAAGAAAAGGAGACGTACCACCAAGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGGGCCGAAAAGCCAGAAGTACGTGATGCTGCTAGAGAAGCTGCTCTCCGGTGTGTACTCTCATGAACGACCGATTGAAACTATAATTGAAATTTTATAACATACAAACATGAATTTGTACTGAATCCATGGATTTTGATTGAATTTCAGTGAAATTAAGGAAAGGATTAAGAAAACTAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCTCCAGGTAAGGGCAACGTTGCCAAGGGGCCTGCATCCAAGGGTCCAAAGCTCGGCGGTGGTGGTGGGAAGCGTTGATCTCCTTTTTTGGTTTGTTTTGTTATTTAAATTGGCAAGTTTAGTAGATAGGACATGTGTTAATTCGGAGTACTTCACGTGTTATGAGAAGTTATCTGTATTCTTCGTTGGTTTTGGAAATTTTTTTACAATCGAGCAATGCTGTTATTTTTTGTTTCTGAGTTCTTTCATTCACATGTTACTCAATTTTGTGCTGCTAGTGAGGCTTTCATCATGCATTTCTTTACTATTTAACCACCAAGGGAGATCTTGTGTC

mRNA sequence

CCCAAAGCAAGAGTCAGGCCCAAAAGACTATCCAACAATTCCAATATAAGCTACCGATTCGGCAGGGTTTTGTCTCTAGGGTTTCATCGTCAACAGCGCGGCAGCAAGTTAAGCCTCACCAGCGGCCATGGTTCTCAAGACCGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATTAGATTCGTCAGGGCTGATTCTCAGGTGTTTCTCTTTGCCAACTCGAAATGCAAGAGGTATTTCCACAACCGGTTGAAGCCTTCGAAGCTTACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAAAGGAGACGTACCACCAAGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGGGCCGAAAAGCCAGAAGTACGTGATGCTGCTAGAGAAGCTGCTCTCCGTGAAATTAAGGAAAGGATTAAGAAAACTAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCTCCAGGTAAGGGCAACGTTGCCAAGGGGCCTGCATCCAAGGGTCCAAAGCTCGGCGGTGGTGGTGGGAAGCGTTGATCTCCTTTTTTGGTTTGTTTTGTTATTTAAATTGGCAAGTTTAGTAGATAGGACATGTGTTAATTCGGAGTACTTCACGTGTTATGAGAAGTTATCTGTATTCTTCGTTGGTTTTGGAAATTTTTTTACAATCGAGCAATGCTGTTATTTTTTGTTTCTGAGTTCTTTCATTCACATGTTACTCAATTTTGTGCTGCTAGTGAGGCTTTCATCATGCATTTCTTTACTATTTAACCACCAAGGGAGATCTTGTGTC

Coding sequence (CDS)

ATGGTTCTCAAGACCGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATTAGATTCGTCAGGGCTGATTCTCAGGTGTTTCTCTTTGCCAACTCGAAATGCAAGAGGTATTTCCACAACCGGTTGAAGCCTTCGAAGCTTACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAAAGGAGACGTACCACCAAGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGGGCCGAAAAGCCAGAAGTACGTGATGCTGCTAGAGAAGCTGCTCTCCGTGAAATTAAGGAAAGGATTAAGAAAACTAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCTCCAGGTAAGGGCAACGTTGCCAAGGGGCCTGCATCCAAGGGTCCAAAGCTCGGCGGTGGTGGTGGGAAGCGTTGA

Protein sequence

MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR

Homology

[Close]

BLAST of Cmc04g0117281.1 vs. NCBI nr
Match: XP_008442779.1 (PREDICTED: 60S ribosomal protein L24-like [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 6.4e-79
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Cmc04g0117281.1 vs. NCBI nr
Match: XP_004137862.1 (60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa_002195 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 2.4e-78
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Cmc04g0117281.1 vs. NCBI nr
Match: XP_022935353.1 (60S ribosomal protein L24-like [Cucurbita moschata] >XP_022983124.1 60S ribosomal protein L24-like isoform X2 [Cucurbita maxima] >XP_023527804.1 60S ribosomal protein L24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.4 bits (768), Expect = 9.2e-78
Identity = 160/164 (97.56%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG+KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Cmc04g0117281.1 vs. NCBI nr
Match: XP_038903235.1 (60S ribosomal protein L24-like [Benincasa hispida])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Cmc04g0117281.1 vs. NCBI nr
Match: KAG6580651.1 (60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298.9 bits (764), Expect = 2.7e-77
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG+KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKK EVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKTEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.7e-72
Identity = 145/163 (88.96%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVKKRRR TKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGK 164
           KTKDEKKAKKAEV +K+QK+ GKGNV KG   KGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.6e-71
Identity = 147/160 (91.88%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPAS-KGPKLGG 160
           KTKDEKKAKKAEV  KSQK+ GKG++AKG A  KGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 8.1e-69
Identity = 144/164 (87.80%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDI  EA KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEV    +   GKG V KG  SKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTKSQKSQGGKGAVQKG--SKGPKLGGGGGKR 162

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 256.5 bits (654), Expect = 2.0e-67
Identity = 137/164 (83.54%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+  KGN+ K  A K  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.7e-66
Identity = 140/165 (84.85%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAK-GPASKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  K   ASKGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy TrEMBL
Match: A0A1S3B6I5 (60S ribosomal protein L24-like OS=Cucumis melo OX=3656 GN=LOC103486557 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.1e-79
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy TrEMBL
Match: A0A0A0LGG6 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy TrEMBL
Match: A0A6J1J6E9 (60S ribosomal protein L24-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481766 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.5e-78
Identity = 160/164 (97.56%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG+KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy TrEMBL
Match: A0A6J1FAB6 (60S ribosomal protein L24-like OS=Cucurbita moschata OX=3662 GN=LOC111442264 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.5e-78
Identity = 160/164 (97.56%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG+KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRTT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Cmc04g0117281.1 vs. ExPASy TrEMBL
Match: A0A5A7TPC8 (60S ribosomal protein L24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003320 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.2e-77
Identity = 160/163 (98.16%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 2   VLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQH 61
           ++ TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQH
Sbjct: 60  MITTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQH 119

Query: 62  KKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 121
           KKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK
Sbjct: 120 KKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 179

Query: 122 TKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           TKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 180 TKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 222

[Close]

BLAST of Cmc04g0117281.1 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-68
Identity = 137/164 (83.54%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+  KGN+ K  A K  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Cmc04g0117281.1 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-67
Identity = 140/165 (84.85%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAK-GPASKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  K   ASKGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Cmc04g0117281.1 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

[Close]

BLAST of Cmc04g0117281.1 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

The following BLAST results are available for this feature:

BLAST of Cmc04g0117281.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442779.1	6.4e-79	100.00	PREDICTED: 60S ribosomal protein L24-like [Cucumis melo]	[more]
XP_004137862.1	2.4e-78	99.39	60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa...	[more]
XP_022935353.1	9.2e-78	97.56	60S ribosomal protein L24-like [Cucurbita moschata] >XP_022983124.1 60S ribosoma...	[more]
XP_038903235.1	1.6e-77	98.17	60S ribosomal protein L24-like [Benincasa hispida]	[more]
KAG6580651.1	2.7e-77	96.95	60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cmc04g0117281.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	2.7e-72	88.96	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q9FUL4	6.6e-71	91.88	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
P50888	8.1e-69	87.80	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]
Q42347	2.0e-67	83.54	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
P38666	1.7e-66	84.85	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]

BLAST of Cmc04g0117281.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B6I5	3.1e-79	100.00	60S ribosomal protein L24-like OS=Cucumis melo OX=3656 GN=LOC103486557 PE=3 SV=1	[more]
A0A0A0LGG6	1.2e-78	99.39	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 ...	[more]
A0A6J1J6E9	4.5e-78	97.56	60S ribosomal protein L24-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FAB6	4.5e-78	97.56	60S ribosomal protein L24-like OS=Cucurbita moschata OX=3662 GN=LOC111442264 PE=...	[more]
A0A5A7TPC8	2.2e-77	98.16	60S ribosomal protein L24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Cmc04g0117281.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	1.4e-68	83.54	ribosomal protein L24	[more]
AT3G53020.1	1.2e-67	84.85	Ribosomal protein L24e family protein	[more]
AT2G44860.1	4.2e-12	36.72	Ribosomal protein L24e family protein	[more]
AT2G44860.2	4.2e-12	36.72	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..136
None	No IPR available	GENE3D	6.10.250.1270		coord: 69..139 e-value: 3.6E-22 score: 80.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..136
None	No IPR available	PANTHER	PTHR10792:SF37	60S RIBOSOMAL PROTEIN L24	coord: 1..164
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 6..58
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 8..46 e-value: 4.1E-4 score: 29.7
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 3..64 e-value: 9.4E-34 score: 117.5
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 3..67 e-value: 8.1E-29 score: 99.7
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..164
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 3..56 e-value: 4.25556E-20 score: 76.457
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 10..27

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0117281	Cmc04g0117281	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0117281.1-exon	Cmc04g0117281.1-exon-CMiso1.1chr04:34516489..34516901	exon
Cmc04g0117281.1-exon	Cmc04g0117281.1-exon-CMiso1.1chr04:34517002..34517150	exon
Cmc04g0117281.1-exon	Cmc04g0117281.1-exon-CMiso1.1chr04:34517689..34517790	exon
Cmc04g0117281.1-exon	Cmc04g0117281.1-exon-CMiso1.1chr04:34518011..34518086	exon
Cmc04g0117281.1-exon	Cmc04g0117281.1-exon-CMiso1.1chr04:34518582..34518719	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0117281.1-three_prime_utr	Cmc04g0117281.1-three_prime_utr-CMiso1.1chr04:34516489..34516744	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0117281.1-cds	Cmc04g0117281.1-cds-CMiso1.1chr04:34516745..34516901	CDS
Cmc04g0117281.1-cds	Cmc04g0117281.1-cds-CMiso1.1chr04:34517002..34517150	CDS
Cmc04g0117281.1-cds	Cmc04g0117281.1-cds-CMiso1.1chr04:34517689..34517790	CDS
Cmc04g0117281.1-cds	Cmc04g0117281.1-cds-CMiso1.1chr04:34518011..34518086	CDS
Cmc04g0117281.1-cds	Cmc04g0117281.1-cds-CMiso1.1chr04:34518582..34518592	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0117281.1-five_prime_utr	Cmc04g0117281.1-five_prime_utr-CMiso1.1chr04:34518593..34518719	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0117281.1	Cmc04g0117281.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome