Cmc04g0113241.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0113241.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr04: 31863436 .. 31865067 (+)
Sequence length	1632
RNA-Seq Expression	Cmc04g0113241.1
Synteny	Cmc04g0113241.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAACAAGAAGAAGAAGAAGAAGGAAAACCAGCTCAAAGAGAATAACTAACAAGAAGATGAATGTGAAAATCGTGAAGAAGAATGAAGAAGAAGCCGATGAGAAGAATCCATTCCAAAACTAACAGGTTATGTTTTTCAGTCGAGCAAATCTGACACCGCTGTCTTTCTAAAAGGATCAACTTGAGCTAATTGTTCTGCCAAAGCTTTGTTTGGAAAAACTTTATCTGCCATCATTCTCTCTCTCATACCATAGGCCGTAGTCTTGGCGTTAACATATGCTCGTATTAGAGTTCCAAATTGGCCGAAACGAGCCATGAAACCCGATTGTCTCATCCTATGAAAGATTTTCTCTGCATTGTGAACATCACCCCTCCTTGCGTAGTGATCCATGAGAGTCATGTATGAGGTAAACAATGGCTTCATCCCGTATTGTTGAACAGCCTTAACCAAGAAAGAGTCTGCCTTTTCTACCTCCCCTGCTTCCGCATAGAGCTTCACAACTGCATCACATATCAACGGATCCATGCGGCAACCGCGCTCTGCCATCTGATTGACTAGTTCCTTGCCCTTTGTCAGCATCTTACTGTCTCCATAAACCTTCAGCATGGCATGATAGTGTCTTGTGGATAGCTTCGTCCATGTTTTTACAACTCTATTAAAAATACTCTCTGCTTCCGGTACATTCTTCAGCCTTCCCCAAGCAACAATGGCAGCCATACATTCTTCAATACGAGGATTTGCCTCACAGCTCTTCCAGAGCCTCCTCACTTCATCTTCCATTTGGAGTTCTCCATAAAGGGGAAGTAAAAGTCTGCGTGACCATTGAGAACCGTTGGAGTCGAATTCTTCCATCTCCTTTAAAACGGCCTTGGCTTTATCTTTATGCCCACCTGAAACATAGTGTTTAGCTAATATGGAAAGTGTATAAACATCAAGTTCAATTCCTTCATCCTTCATTTTATCAACAACTTGTTCCATCCCTCTCATGTCATTTGAAAGGCCTTTAGCATCTATTAAGGCAATGTAAGTAAACCGAGAAGGCTTGACATTTTCTTTCTCCATCAACAATAAAACATCGGCTATTTTCTTCTTGTCAATCCTCTTGTAAAGAACAAGCATCTGGTCGTAAGCAAATGTTGTCATTGGGAACTCAAGATCCTTCATTTTGTTGAATACTTCCTCCGCTTTTTTTACATTTTTGGCAACCACATAGTTAGCTAAAAGAGTTCGGTACACCGCCTCCCCTTGGAAGGACTTTGGGATTGTAGCAATGTAACTCTCTGCCTTATGGGGACCTTTTACCTTTGCAATCAAGTCAAGGCGAGAAGCATAATCTCTTTCATTAAATTCGAGTTGTCCCCTTGCTTCCAACCACTCTGAAAACTGTGAAACTCATACAGAAAAGCAAGCGATGAGTTCAAGAAATGACAAACGAATGTCTAAAAATAGGCGGAAATATTTACCACACGCTAGCTACAAAAATTTTCAGGGACAAAAATTGCATAACCATTTTCATGGCTGTCATGGCTTTTATAGGGCCAACAATATAAATTCCGATCCAAATAAACTAGGCAGTGGTTCTACTTCTGATTCTGCGAACCAAACGTCAAACCAACCAAAAATTTGGTAA

mRNA sequence

TTGAACAAGAAGAAGAAGAAGAAGGAAAACCAGCTCAAAGAGAATAACTAACAAGAAGATGAATGTGAAAATCGTGAAGAAGAATGAAGAAGAAGCCGATGAGAAGAATCCATTCCAAAACTAACAGGTTATGTTTTTCAGTCGAGCAAATCTGACACCGCTGTCTTTCTAAAAGGATCAACTTGAGCTAATTGTTCTGCCAAAGCTTTGTTTGGAAAAACTTTATCTGCCATCATTCTCTCTCTCATACCATAGGCCGTAGTCTTGGCGTTAACATATGCTCGTATTAGAGTTCCAAATTGGCCGAAACGAGCCATGAAACCCGATTGTCTCATCCTATGAAAGATTTTCTCTGCATTGTGAACATCACCCCTCCTTGCGTAGTGATCCATGAGAGTCATGTATGAGGTAAACAATGGCTTCATCCCGTATTGTTGAACAGCCTTAACCAAGAAAGAGTCTGCCTTTTCTACCTCCCCTGCTTCCGCATAGAGCTTCACAACTGCATCACATATCAACGGATCCATGCGGCAACCGCGCTCTGCCATCTGATTGACTAGTTCCTTGCCCTTTGTCAGCATCTTACTGTCTCCATAAACCTTCAGCATGGCATGATAGTGTCTTGTGGATAGCTTCGTCCATGTTTTTACAACTCTATTAAAAATACTCTCTGCTTCCGGTACATTCTTCAGCCTTCCCCAAGCAACAATGGCAGCCATACATTCTTCAATACGAGGATTTGCCTCACAGCTCTTCCAGAGCCTCCTCACTTCATCTTCCATTTGGAGTTCTCCATAAAGGGGAAGTAAAAGTCTGCGTGACCATTGAGAACCGTTGGAGTCGAATTCTTCCATCTCCTTTAAAACGGCCTTGGCTTTATCTTTATGCCCACCTGAAACATAGTGTTTAGCTAATATGGAAAGTGTATAAACATCAAGTTCAATTCCTTCATCCTTCATTTTATCAACAACTTGTTCCATCCCTCTCATGTCATTTGAAAGGCCTTTAGCATCTATTAAGGCAATGTAAGTAAACCGAGAAGGCTTGACATTTTCTTTCTCCATCAACAATAAAACATCGGCTATTTTCTTCTTGTCAATCCTCTTGTAAAGAACAAGCATCTGGTCGTAAGCAAATGTTGTCATTGGGAACTCAAGATCCTTCATTTTGTTGAATACTTCCTCCGCTTTTTTTACATTTTTGGCAACCACATAGTTAGCTAAAAGAGTTCGGTACACCGCCTCCCCTTGGAAGGACTTTGGGATTGTAGCAATGTAACTCTCTGCCTTATGGGGACCTTTTACCTTTGCAATCAAGTCAAGGCGAGAAGCATAATCTCTTTCATTAAATTCGAGTTGTCCCCTTGCTTCCAACCACTCTGAAAACTGTGAAACTCATACAGAAAAGCAAGCGATGAGTTCAAGAAATGACAAACGAATGTCTAAAAATAGGCGGAAATATTTACCACACGCTAGCTACAAAAATTTTCAGGGACAAAAATTGCATAACCATTTTCATGGCTGTCATGGCTTTTATAGGGCCAACAATATAAATTCCGATCCAAATAAACTAGGCAGTGGTTCTACTTCTGATTCTGCGAACCAAACGTCAAACCAACCAAAAATTTGGTAA

Coding sequence (CDS)

ATGAGTTCAAGAAATGACAAACGAATGTCTAAAAATAGGCGGAAATATTTACCACACGCTAGCTACAAAAATTTTCAGGGACAAAAATTGCATAACCATTTTCATGGCTGTCATGGCTTTTATAGGGCCAACAATATAAATTCCGATCCAAATAAACTAGGCAGTGGTTCTACTTCTGATTCTGCGAACCAAACGTCAAACCAACCAAAAATTTGGTAA

Protein sequence

MSSRNDKRMSKNRRKYLPHASYKNFQGQKLHNHFHGCHGFYRANNINSDPNKLGSGSTSDSANQTSNQPKIW

Homology

The following BLAST results are available for this feature:

BLAST of Cmc04g0113241.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc04g0113241.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc04g0113241.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc04g0113241.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0113241	Cmc04g0113241	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0113241.1-exon	Cmc04g0113241.1-exon-CMiso1.1chr04:31863436..31865067	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0113241.1-five_prime_utr	Cmc04g0113241.1-five_prime_utr-CMiso1.1chr04:31863436..31864848	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0113241.1-cds	Cmc04g0113241.1-cds-CMiso1.1chr04:31864849..31865067	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0113241.1	Cmc04g0113241.1-protein	polypeptide