Cmc04g0109851.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0109851.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 29186297 .. 29186857 (+)
Sequence length	561
RNA-Seq Expression	Cmc04g0109851.1
Synteny	Cmc04g0109851.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATCTTTGGATCAAACTTGCACGTTATGAATGATGTAAAATATATGTTGAGTGCAAACTTTGACTTGAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAAGTACAAGAACTGAAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTATAACTACTTTGAAAGTAAACCAGCTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAACACTGGTGATAGTGTTAACCAATCCGAGTACGCTAATATCGTAGGTAGTTTAAGGTATGCTGCTGATTGCACTAGACCAGACATAACTTATGCCGTAGAATTACTATGTAGGTTTACCAGCAAACCCAGTCTAGAATACTGGAATGTAATAGAGAGAGCAATGAGATACCTTAAGAAAACCCAAAACTTAGGATTACATTATAATAAGTTTTCCGCTGTACTTGAAGGTTACAACGATGCTGTTTGGAACTCTCTCTCAGATGACTCAAAGGCTATAAGTGGCTATATTTTTAATATAGTAGGAGGAGCTGTTGCTTGA

mRNA sequence

ATGTTAATCTTTGGATCAAACTTGCACGTTATGAATGATGTAAAATATATGTTGAGTGCAAACTTTGACTTGAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAAGTACAAGAACTGAAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTATAACTACTTTGAAAGTAAACCAGCTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAACACTGGTGATAGTGTTAACCAATCCGAGTACGCTAATATCGTAGGTAGTTTAAGGTATGCTGCTGATTGCACTAGACCAGACATAACTTATGCCGTAGAATTACTATGTAGGTTTACCAGCAAACCCAGTCTAGAATACTGGAATGTAATAGAGAGAGCAATGAGATACCTTAAGAAAACCCAAAACTTAGGATTACATTATAATAAGTTTTCCGCTGTACTTGAAGGTTACAACGATGCTGTTTGGAACTCTCTCTCAGATGACTCAAAGGCTATAAGTGGCTATATTTTTAATATAGTAGGAGGAGCTGTTGCTTGA

Coding sequence (CDS)

ATGTTAATCTTTGGATCAAACTTGCACGTTATGAATGATGTAAAATATATGTTGAGTGCAAACTTTGACTTGAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAAGTACAAGAACTGAAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTATAACTACTTTGAAAGTAAACCAGCTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAACACTGGTGATAGTGTTAACCAATCCGAGTACGCTAATATCGTAGGTAGTTTAAGGTATGCTGCTGATTGCACTAGACCAGACATAACTTATGCCGTAGAATTACTATGTAGGTTTACCAGCAAACCCAGTCTAGAATACTGGAATGTAATAGAGAGAGCAATGAGATACCTTAAGAAAACCCAAAACTTAGGATTACATTATAATAAGTTTTCCGCTGTACTTGAAGGTTACAACGATGCTGTTTGGAACTCTCTCTCAGATGACTCAAAGGCTATAAGTGGCTATATTTTTAATATAGTAGGAGGAGCTGTTGCTTGA

Protein sequence

MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFTSKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNIVGGAVA

Homology

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BLAST of Cmc04g0109851.1 vs. NCBI nr
Match: KAA0057193.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK18768.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 161/163 (98.77%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 24  LKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTG 83
           +KDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTG
Sbjct: 1   MKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTG 60

Query: 84  DSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFTSKPSLEYWNVIERAMRYLKKTQN 143
           DSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFTSKPSLEYWNVIER MRYLKKTQN
Sbjct: 61  DSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFTSKPSLEYWNVIERVMRYLKKTQN 120

Query: 144 LGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNIVGGAVA 187
           LGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNIVGGAVA
Sbjct: 121 LGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNIVGGAVA 163

[Close]

BLAST of Cmc04g0109851.1 vs. NCBI nr
Match: KAA0032842.1 (hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK21198.1 hypothetical protein E5676_scaffold359G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 161/186 (86.56%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           MLIFGSNLHV+NDVK ML+ NFD+KDLGEADVILGIK TR ENGI LDQSHYIEKILKKY
Sbjct: 91  MLIFGSNLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKY 150

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
           NYF+SKPACTPYDSSVKLFKNTGDSVNQSEYA+I+GSLRYAADCTRPDI YAV LLCRFT
Sbjct: 151 NYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIAYAVGLLCRFT 210

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNI 180
           S+PSLE+WN IER MRYLKK QNLGLHYNKF AVLEGYNDA WNS SDDSKA SGYIFNI
Sbjct: 211 SRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNI 270

Query: 181 VGGAVA 187
            G  VA
Sbjct: 271 AGEVVA 276

[Close]

BLAST of Cmc04g0109851.1 vs. NCBI nr
Match: TYK00058.1 (hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 6.1e-86
Identity = 161/186 (86.56%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           MLIFGSNLH++NDVK MLSANFD+KDLGEADVILGIK  RTENGI LDQSHYIEKILKKY
Sbjct: 91  MLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEKILKKY 150

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
           NYFESKPACTPYDSSVKLFKNTGDSVNQSEYA+I+GSLRYAADCTRPDI Y + LLCRFT
Sbjct: 151 NYFESKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIAYTIGLLCRFT 210

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNI 180
           S+ SLE+WN IER MRYLKKTQNLGLHYNKFS VLEGY DA WNSLSDDSKAISGYIF I
Sbjct: 211 SRLSLEHWNAIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISGYIFKI 270

Query: 181 VGGAVA 187
              AVA
Sbjct: 271 TEEAVA 276

[Close]

BLAST of Cmc04g0109851.1 vs. NCBI nr
Match: KAA0060459.1 (hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK18544.1 hypothetical protein E5676_scaffold119G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 327.4 bits (838), Expect = 8.0e-86
Identity = 159/186 (85.48%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           MLIFGSNLHV+NDVK MLS NFD+KDLGEADVILGIK TRTENGIFLDQSHYIEK LKKY
Sbjct: 91  MLIFGSNLHVINDVKSMLSVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKTLKKY 150

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
           NYF+SKP CTPYDSSVKLFKNTGDSVNQ+EYA+I+GSLRYA D TRP I YAV LLCRFT
Sbjct: 151 NYFDSKPTCTPYDSSVKLFKNTGDSVNQTEYASIIGSLRYAVDYTRPSIAYAVGLLCRFT 210

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNI 180
           S+PSLE+WN IER MRYLKKTQNLGLHYNKF  VLEGY+DA WNSL DDSKA SGYIFNI
Sbjct: 211 SRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSDADWNSLLDDSKATSGYIFNI 270

Query: 181 VGGAVA 187
            GGAVA
Sbjct: 271 AGGAVA 276

[Close]

BLAST of Cmc04g0109851.1 vs. NCBI nr
Match: KAA0058878.1 (putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-84
Identity = 156/186 (83.87%), Postives = 167/186 (89.78%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           ML F SNLHV+NDVK MLS NFD+KDLGEAD+ILGIK TRT+NGI LDQS+YIEKILKKY
Sbjct: 207 MLSFVSNLHVINDVKSMLSVNFDMKDLGEADIILGIKITRTKNGISLDQSYYIEKILKKY 266

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
           NYF+SKPACTPYDSSVKLFKNTGD+VNQSEY +I+GSLRY ADCTRPDI YAV LLCRFT
Sbjct: 267 NYFDSKPACTPYDSSVKLFKNTGDNVNQSEYTSIIGSLRYVADCTRPDIAYAVGLLCRFT 326

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNI 180
           S+P LE+WN IER MRYLKKTQNLGLHYNKFS VLEGYND  WNSLSDDSKA SGYIFNI
Sbjct: 327 SRPCLEHWNAIERIMRYLKKTQNLGLHYNKFSTVLEGYNDVDWNSLSDDSKATSGYIFNI 386

Query: 181 VGGAVA 187
            GG VA
Sbjct: 387 AGGVVA 392

[Close]

BLAST of Cmc04g0109851.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-28
Identity = 72/195 (36.92%), Postives = 110/195 (56.41%), Query Frame = 0


Query: 1    MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIK--STRTENGIFLDQSHYIEKILK 60
            MLI G +  ++  +K  LS +FD+KDLG A  ILG+K    RT   ++L Q  YIE++L+
Sbjct: 1012 MLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLE 1071

Query: 61   KYNYFESKPACTPYDSSVKLFKNTGDSVNQSE-------YANIVGSLRYAADCTRPDITY 120
            ++N   +KP  TP    +KL K    +  + +       Y++ VGSL YA  CTRPDI +
Sbjct: 1072 RFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAH 1131

Query: 121  AVELLCRFTSKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSK 180
            AV ++ RF   P  E+W  ++  +RYL+ T    L +     +L+GY DA      D+ K
Sbjct: 1132 AVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRK 1191

Query: 181  AISGYIFNIVGGAVA 187
            + +GY+F   GGA++
Sbjct: 1192 SSTGYLFTFSGGAIS 1206

[Close]

BLAST of Cmc04g0109851.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 0


Query: 11   MNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKYNYFESKPACT 70
            MN+ K  L   F + DL E    +GI+    E+ I+L QS Y++KIL K+N        T
Sbjct: 1101 MNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVST 1160

Query: 71   PYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFTSKPSLEYWNV 130
            P  S +       D    +   +++G L Y   CTRPD+T AV +L R++SK + E W  
Sbjct: 1161 PLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1220

Query: 131  IERAMRYLKKTQNLGLHYNK---FSAVLEGYNDAVWNSLSDDSKAISGYIFNI 181
            ++R +RYLK T ++ L + K   F   + GY D+ W     D K+ +GY+F +
Sbjct: 1221 LKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKM 1273

[Close]

BLAST of Cmc04g0109851.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-22
Identity = 67/179 (37.43%), Postives = 99/179 (55.31%), Query Frame = 0


Query: 1    MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
            +LI G++  ++++    LS  F +KD  E    LGI++ R   G+ L Q  YI  +L + 
Sbjct: 1154 ILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLART 1213

Query: 61   NYFESKPACTPYDSSVKLFKNTGDSV-NQSEYANIVGSLRYAADCTRPDITYAVELLCRF 120
            N   +KP  TP   S KL   +G  + + +EY  IVGSL+Y A  TRPDI+YAV  L +F
Sbjct: 1214 NMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLA-FTRPDISYAVNRLSQF 1273

Query: 121  TSKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAV-LEGYNDAVWNSLSDDSKAISGYI 178
               P+ E+   ++R +RYL  T N G+   K + + L  Y+DA W    DD  + +GYI
Sbjct: 1274 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYI 1331

[Close]

BLAST of Cmc04g0109851.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-22
Identity = 62/179 (34.64%), Postives = 101/179 (56.42%), Query Frame = 0


Query: 1    MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
            +LI G++  ++      LS  F +K+  +    LGI++ R   G+ L Q  Y   +L + 
Sbjct: 1137 ILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLART 1196

Query: 61   NYFESKPACTPYDSSVKLFKNTGDSV-NQSEYANIVGSLRYAADCTRPDITYAVELLCRF 120
            N   +KP  TP  +S KL  ++G  + + +EY  IVGSL+Y A  TRPD++YAV  L ++
Sbjct: 1197 NMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLA-FTRPDLSYAVNRLSQY 1256

Query: 121  TSKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAV-LEGYNDAVWNSLSDDSKAISGYI 178
               P+ ++WN ++R +RYL  T + G+   K + + L  Y+DA W   +DD  + +GYI
Sbjct: 1257 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYI 1314

[Close]

BLAST of Cmc04g0109851.1 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-21
Identity = 56/177 (31.64%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           +L+ GS+  ++N + + LS+ F +KDLG     LGI+     +G+FL Q+ Y E+IL   
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
              + KP  TP    +    +T    + S++ +IVG+L+Y    TRPDI+YAV ++C+  
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAVNIVCQRM 129

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAV-LEGYNDAVWNSLSDDSKAISGY 177
            +P+L  +++++R +RY+K T   GL+ +K S + ++ + D+ W   +   ++ +G+
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGF 185

[Close]

BLAST of Cmc04g0109851.1 vs. ExPASy TrEMBL
Match: A0A5D3D5D8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00750 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.0e-87
Identity = 161/163 (98.77%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 24  LKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTG 83
           +KDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTG
Sbjct: 1   MKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTG 60

Query: 84  DSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFTSKPSLEYWNVIERAMRYLKKTQN 143
           DSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFTSKPSLEYWNVIER MRYLKKTQN
Sbjct: 61  DSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFTSKPSLEYWNVIERVMRYLKKTQN 120

Query: 144 LGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNIVGGAVA 187
           LGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNIVGGAVA
Sbjct: 121 LGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNIVGGAVA 163

[Close]

BLAST of Cmc04g0109851.1 vs. ExPASy TrEMBL
Match: A0A5A7SNZ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00010 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.8e-87
Identity = 161/186 (86.56%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           MLIFGSNLHV+NDVK ML+ NFD+KDLGEADVILGIK TR ENGI LDQSHYIEKILKKY
Sbjct: 91  MLIFGSNLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEKILKKY 150

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
           NYF+SKPACTPYDSSVKLFKNTGDSVNQSEYA+I+GSLRYAADCTRPDI YAV LLCRFT
Sbjct: 151 NYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIAYAVGLLCRFT 210

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNI 180
           S+PSLE+WN IER MRYLKK QNLGLHYNKF AVLEGYNDA WNS SDDSKA SGYIFNI
Sbjct: 211 SRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSGYIFNI 270

Query: 181 VGGAVA 187
            G  VA
Sbjct: 271 AGEVVA 276

[Close]

BLAST of Cmc04g0109851.1 vs. ExPASy TrEMBL
Match: A0A5D3BLQ7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00040 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.0e-86
Identity = 161/186 (86.56%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           MLIFGSNLH++NDVK MLSANFD+KDLGEADVILGIK  RTENGI LDQSHYIEKILKKY
Sbjct: 91  MLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEKILKKY 150

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
           NYFESKPACTPYDSSVKLFKNTGDSVNQSEYA+I+GSLRYAADCTRPDI Y + LLCRFT
Sbjct: 151 NYFESKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIAYTIGLLCRFT 210

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNI 180
           S+ SLE+WN IER MRYLKKTQNLGLHYNKFS VLEGY DA WNSLSDDSKAISGYIF I
Sbjct: 211 SRLSLEHWNAIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISGYIFKI 270

Query: 181 VGGAVA 187
              AVA
Sbjct: 271 TEEAVA 276

[Close]

BLAST of Cmc04g0109851.1 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.9e-86
Identity = 159/186 (85.48%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           MLIFGSNLHV+NDVK MLS NFD+KDLGEADVILGIK TRTENGIFLDQSHYIEK LKKY
Sbjct: 91  MLIFGSNLHVINDVKSMLSVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEKTLKKY 150

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
           NYF+SKP CTPYDSSVKLFKNTGDSVNQ+EYA+I+GSLRYA D TRP I YAV LLCRFT
Sbjct: 151 NYFDSKPTCTPYDSSVKLFKNTGDSVNQTEYASIIGSLRYAVDYTRPSIAYAVGLLCRFT 210

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNI 180
           S+PSLE+WN IER MRYLKKTQNLGLHYNKF  VLEGY+DA WNSL DDSKA SGYIFNI
Sbjct: 211 SRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSDADWNSLLDDSKATSGYIFNI 270

Query: 181 VGGAVA 187
            GGAVA
Sbjct: 271 AGGAVA 276

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BLAST of Cmc04g0109851.1 vs. ExPASy TrEMBL
Match: A0A5D3DJH9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00620 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.6e-85
Identity = 156/186 (83.87%), Postives = 167/186 (89.78%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           ML F SNLHV+NDVK MLS NFD+KDLGEAD+ILGIK TRT+NGI LDQS+YIEKILKKY
Sbjct: 207 MLSFVSNLHVINDVKSMLSVNFDMKDLGEADIILGIKITRTKNGISLDQSYYIEKILKKY 266

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
           NYF+SKPACTPYDSSVKLFKNTGD+VNQSEY +I+GSLRY ADCTRPDI YAV LLCRFT
Sbjct: 267 NYFDSKPACTPYDSSVKLFKNTGDNVNQSEYTSIIGSLRYVADCTRPDIAYAVGLLCRFT 326

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAVLEGYNDAVWNSLSDDSKAISGYIFNI 180
           S+P LE+WN IER MRYLKKTQNLGLHYNKFS VLEGYND  WNSLSDDSKA SGYIFNI
Sbjct: 327 SRPCLEHWNAIERIMRYLKKTQNLGLHYNKFSTVLEGYNDVDWNSLSDDSKATSGYIFNI 386

Query: 181 VGGAVA 187
            GG VA
Sbjct: 387 AGGVVA 392

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BLAST of Cmc04g0109851.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-22
Identity = 56/177 (31.64%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           +L+ GS+  ++N + + LS+ F +KDLG     LGI+     +G+FL Q+ Y E+IL   
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  NYFESKPACTPYDSSVKLFKNTGDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRFT 120
              + KP  TP    +    +T    + S++ +IVG+L+Y    TRPDI+YAV ++C+  
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAVNIVCQRM 129

Query: 121 SKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAV-LEGYNDAVWNSLSDDSKAISGY 177
            +P+L  +++++R +RY+K T   GL+ +K S + ++ + D+ W   +   ++ +G+
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGF 185

[Close]

BLAST of Cmc04g0109851.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-17
Identity = 53/178 (29.78%), Postives = 93/178 (52.25%), Query Frame = 0


Query: 1   MLIFGSNLHVMNDVKYMLSANFDLKDLGEADVILGIKSTRTENGIFLDQSHYIEKILKKY 60
           ++I  +N   ++++K  L + F L+DLG     LG++  R+  GI + Q  Y   +L + 
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 61  NYFESKPACTPYDSSVKLFKNT-GDSVNQSEYANIVGSLRYAADCTRPDITYAVELLCRF 120
                KP+  P D SV    ++ GD V+   Y  ++G L Y    TR DI++AV  L +F
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMY-LQITRLDISFAVNKLSQF 406

Query: 121 TSKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAV-LEGYNDAVWNSLSDDSKAISGY 177
           +  P L +   + + + Y+K T   GL Y+  + + L+ ++DA + S  D  ++ +GY
Sbjct: 407 SEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGY 463

[Close]

BLAST of Cmc04g0109851.1 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-05
Identity = 23/73 (31.51%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 105 TRPDITYAVELLCRFTSKPSLEYWNVIERAMRYLKKTQNLGLHYNKFSAV-LEGYNDAVW 164
           TRPD+T+AV  L +F+S         + + + Y+K T   GL Y+  S + L+ + D+ W
Sbjct: 6   TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDW 65

Query: 165 NSLSDDSKAISGY 177
            S  D  ++++G+
Sbjct: 66  ASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc04g0109851.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057193.1	1.2e-86	98.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0032842.1	1.6e-86	86.56	hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK211...	[more]
TYK00058.1	6.1e-86	86.56	hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa]	[more]
KAA0060459.1	8.0e-86	85.48	hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK1854...	[more]
KAA0058878.1	1.2e-84	83.87	putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein...	[more]

BLAST of Cmc04g0109851.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.1e-28	36.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.0e-22	34.68	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.2e-22	37.43	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.2e-22	34.64	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	3.2e-21	31.64	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0109851.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5D8	6.0e-87	98.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SNZ1	7.8e-87	86.56	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BLQ7	3.0e-86	86.56	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3D4T4	3.9e-86	85.48	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3DJH9	5.6e-85	83.87	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold160...	[more]

BLAST of Cmc04g0109851.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.3e-22	31.64	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	3.8e-17	29.78	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	1.5e-05	31.51	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..71 e-value: 1.2E-12 score: 48.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0109851	Cmc04g0109851	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0109851.1-exon	Cmc04g0109851.1-exon-CMiso1.1chr04:29186297..29186857	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0109851.1-cds	Cmc04g0109851.1-cds-CMiso1.1chr04:29186297..29186857	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0109851.1	Cmc04g0109851.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding