Cmc04g0104771.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0104771.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 22910340 .. 22911836 (-)
Sequence length	1497
RNA-Seq Expression	Cmc04g0104771.1
Synteny	Cmc04g0104771.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGTAATCCAATTTCTGTAGTAGTGAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGACAACTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTACTGGAAAAGGTCTTAGAGCCAAAACATCTTTAGAACTTGTACATTCGGACCTTTGTGGACCAATGAATGTCAAAGCTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGATCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGTTGAAGTTGAAAATGAATCAGATAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTGCAATTCCAAGACTATTTAATAGAACATGGAATTCAATCACAACTCTCTGTACCTAGTATGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACCGAACTTTATTAGACATGGTTCACTCTATGATGAGTTTTTCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAACAACTATCTATATTTTAAAGAATGTTCCCTCTAAAAGTGTTTCTGAAACACCTTTTGAGCTATGGAAAGGGCGTAAAGGTAGTTTGCGTCACTTTAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAATCCTAAAAAGTTGGAACGTCGTTCAAAGTTATGCCTATTTATAGGTTATCCAAAAGAATCTAAAGGTGGTTTGTTTTATGACCCTCAAGAAAATAAAGTATTTGTGTCGACAAATGCTACGTTCTTAGAGGAAGACCACATAAGAAATCATCAAACTCACAGTAAACTAGTATTAGAAGAAATTTCCAAAAATACTACAGATAGACCTAGTTCATCCACTAAAGTAGTTGATAAAACTAGGAATATTGGTCAAACACATCCTGCTCAAGAGTTGGGAGAACCTCGATGTAGTGGGAGGATTTTACGACAGCCTGATCGCTATTTGGGTTTAAGTGAAGCTCAAATCGTCATACCTGATGATGGGATAGAGGATCCATTGACCTATAAACAGGTAATGAATGATGTCAACTGTGACAAATGGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTCCAATTCTTTCTGGACTCTAGTAGATCAACCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAAACTTTCAAAGCTCGACTAGTGGCAAAAGGTTATATACAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTCCTGTTGCCATGCTAAAGTCGATTAGAATACTCTTATCCATCGACACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTGAATGGAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACAAAAGGGTTAA

mRNA sequence

ATGTCAAGTAATCCAATTTCTGTAGTAGTGAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGACAACTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTACTGGAAAAGGTCTTAGAGCCAAAACATCTTTAGAACTTGTACATTCGGACCTTTGTGGACCAATGAATGTCAAAGCTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGATCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGTTGAAGTTGAAAATGAATCAGATAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTGCAATTCCAAGACTATTTAATAGAACATGGAATTCAATCACAACTCTCTGTACCTAGTATGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACCGAACTTTATTAGACATGGTTCACTCTATGATGAGTTTTTCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAACAACTATCTATATTTTAAAGAATGTTCCCTCTAAAAGTGTTTCTGAAACACCTTTTGAGCTATGGAAAGGGCGTAAAGGTAGTTTGCGTCACTTTAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAATCCTAAAAAGTTGGAACGTCGTTCAAAGTTATGCCTATTTATAGGTTATCCAAAAGAATCTAAAGGTGGTTTGTTTTATGACCCTCAAGAAAATAAAGTATTTGTGTCGACAAATGCTACGTTCTTAGAGGAAGACCACATAAGAAATCATCAAACTCACAGTAAACTAGTATTAGAAGAAATTTCCAAAAATACTACAGATAGACCTAGTTCATCCACTAAAGTAGTTGATAAAACTAGGAATATTGGTCAAACACATCCTGCTCAAGAGTTGGGAGAACCTCGATGTAGTGGGAGGATTTTACGACAGCCTGATCGCTATTTGGGTTTAAGTGAAGCTCAAATCGTCATACCTGATGATGGGATAGAGGATCCATTGACCTATAAACAGGTAATGAATGATGTCAACTGTGACAAATGGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTCCAATTCTTTCTGGACTCTAGTAGATCAACCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAAACTTTCAAAGCTCGACTAGTGGCAAAAGGTTATATACAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTCCTGTTGCCATGCTAAAGTCGATTAGAATACTCTTATCCATCGACACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTGAATGGAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACAAAAGGGTTAA

Coding sequence (CDS)

ATGTCAAGTAATCCAATTTCTGTAGTAGTGAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGACAACTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTACTGGAAAAGGTCTTAGAGCCAAAACATCTTTAGAACTTGTACATTCGGACCTTTGTGGACCAATGAATGTCAAAGCTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGATCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGTTGAAGTTGAAAATGAATCAGATAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTGCAATTCCAAGACTATTTAATAGAACATGGAATTCAATCACAACTCTCTGTACCTAGTATGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACCGAACTTTATTAGACATGGTTCACTCTATGATGAGTTTTTCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAACAACTATCTATATTTTAAAGAATGTTCCCTCTAAAAGTGTTTCTGAAACACCTTTTGAGCTATGGAAAGGGCGTAAAGGTAGTTTGCGTCACTTTAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAATCCTAAAAAGTTGGAACGTCGTTCAAAGTTATGCCTATTTATAGGTTATCCAAAAGAATCTAAAGGTGGTTTGTTTTATGACCCTCAAGAAAATAAAGTATTTGTGTCGACAAATGCTACGTTCTTAGAGGAAGACCACATAAGAAATCATCAAACTCACAGTAAACTAGTATTAGAAGAAATTTCCAAAAATACTACAGATAGACCTAGTTCATCCACTAAAGTAGTTGATAAAACTAGGAATATTGGTCAAACACATCCTGCTCAAGAGTTGGGAGAACCTCGATGTAGTGGGAGGATTTTACGACAGCCTGATCGCTATTTGGGTTTAAGTGAAGCTCAAATCGTCATACCTGATGATGGGATAGAGGATCCATTGACCTATAAACAGGTAATGAATGATGTCAACTGTGACAAATGGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTCCAATTCTTTCTGGACTCTAGTAGATCAACCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAAACTTTCAAAGCTCGACTAGTGGCAAAAGGTTATATACAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTCCTGTTGCCATGCTAAAGTCGATTAGAATACTCTTATCCATCGACACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTGAATGGAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACAAAAGGGTTAA

Protein sequence

MSSNPISVVVNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYALETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLFIGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQVMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKG

Homology

[Close]

BLAST of Cmc04g0104771.1 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 845.9 bits (2184), Expect = 1.8e-241
Identity = 410/486 (84.36%), Postives = 443/486 (91.15%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           +NRI RLVKSG+L+QLEDNSLPPC+SCLEGKMTKRSFTGKGLRAK  LELVHSDLCGPMN
Sbjct: 454 LNRIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMN 513

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARGGYEYFISFIDD+SRY HVYL+ +KS+SFEKFKEYK EVENE  KTIKTLRSDRGG
Sbjct: 514 VKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGG 573

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMD +FQDYLIE GIQSQLS PS PQQNGVSERRNRTLLDMV SMMS++QLPDSFWGYA
Sbjct: 574 EYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYA 633

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           LET I+IL NVPSKSV ETP+ELWKGRK SLR+FRIWGCPAHVLVQNPKKLE RSKLCLF
Sbjct: 634 LETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLF 693

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTTDRPSSST 309
           +GYPKES+GGLFY PQENKVFVSTNATFLEEDH RNHQ  SK+VL+E+ KN TD+PSSST
Sbjct: 694 VGYPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSST 753

Query: 310 KVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQVMN 369
           KVVDK     Q+H +QEL  PR SGR++ QP+RYLGL E QI+IPDDG+EDPLTYKQ MN
Sbjct: 754 KVVDKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMN 813

Query: 370 DVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLV 429
           DV+ D+WIKAM+LEMESMY NS WTLVD P+DVKPIGCKWIYKRKRDQAGKVQTFKARLV
Sbjct: 814 DVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLV 873

Query: 430 AKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESIYMV 489
           AKGY QKEG+DYEETFSPVAMLKSIRILLSI TFY+YEIWQMDVKTAFLNGNLEESIYMV
Sbjct: 874 AKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMV 933

Query: 490 QPEGFI 496
           QPEGFI
Sbjct: 934 QPEGFI 939

[Close]

BLAST of Cmc04g0104771.1 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 787.7 bits (2033), Expect = 5.8e-224
Identity = 378/492 (76.83%), Postives = 431/492 (87.60%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           ++RIGRLVK+GLL++L+D SLPPC+SCLEGKMTKR FTGKG RAK  LEL+HSDLCGPMN
Sbjct: 360 LDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMN 419

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARGG+EYFISFIDDYSRY ++YL+++KS++ EKFKEYK EVEN   K IK LRSDRGG
Sbjct: 420 VKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGG 479

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMDL+FQDY+IEHGIQSQLS P  PQQNGVSERRNRTLLDMV SMMS++QLP SFWGYA
Sbjct: 480 EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYA 539

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           +ET ++IL NVPSKSVSETPFELW+GRK SL HFRIWGCPAHVLV NPKKLE RS+LC F
Sbjct: 540 VETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQF 599

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTT---DRPS 309
           +GYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+  SKLVL E +  +T   D   
Sbjct: 600 VGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVG 659

Query: 310 SSTKVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQ 369
            S++ VD+T   GQ+HP+Q L  PR SGR++ QP+RYLGL+E Q+VIPDDG+EDPL+YKQ
Sbjct: 660 PSSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 719

Query: 370 VMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKA 429
            MNDV+ D+W+KAMDLEMESMY NS W LVD P  VKPIGCKWIYKRKRD AGKVQTFKA
Sbjct: 720 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 779

Query: 430 RLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESI 489
           RLVAKGY Q+EG+DYEETFSPVAMLKSIRILLSI TFYDYEIWQMDVKTAFLNGNLEESI
Sbjct: 780 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 839

Query: 490 YMVQPEGFIQKG 499
           +M QPEGFI +G
Sbjct: 840 FMSQPEGFITQG 850

[Close]

BLAST of Cmc04g0104771.1 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 787.7 bits (2033), Expect = 5.8e-224
Identity = 378/492 (76.83%), Postives = 431/492 (87.60%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           ++RIGRLVK+GLL++L+D SLPPC+SCLEGKMTKR FTGKG RAK  LEL+HSDLCGPMN
Sbjct: 234 LDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMN 293

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARGG+EYFISFIDDYSRY ++YL+++KS++ EKFKEYK EVEN   K IK LRSDRGG
Sbjct: 294 VKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGG 353

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMDL+FQDY+IEHGIQSQLS P  PQQNGVSERRNRTLLDMV SMMS++QLP SFWGYA
Sbjct: 354 EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYA 413

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           +ET ++IL NVPSKSVSETPFELW+GRK SL HFRIWGCPAHVLV NPKKLE RS+LC F
Sbjct: 414 VETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQF 473

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTT---DRPS 309
           +GYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+  SKLVL E +  +T   D   
Sbjct: 474 VGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVG 533

Query: 310 SSTKVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQ 369
            S++ VD+T   GQ+HP+Q L  PR SGR++ QP+RYLGL+E Q+VIPDDG+EDPL+YKQ
Sbjct: 534 PSSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 593

Query: 370 VMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKA 429
            MNDV+ D+W+KAMDLEMESMY NS W LVD P  VKPIGCKWIYKRKRD AGKVQTFKA
Sbjct: 594 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 653

Query: 430 RLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESI 489
           RLVAKGY Q+EG+DYEETFSPVAMLKSIRILLSI TFYDYEIWQMDVKTAFLNGNLEESI
Sbjct: 654 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 713

Query: 490 YMVQPEGFIQKG 499
           +M QPEGFI +G
Sbjct: 714 FMSQPEGFITQG 724

[Close]

BLAST of Cmc04g0104771.1 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 784.6 bits (2025), Expect = 4.9e-223
Identity = 377/492 (76.63%), Postives = 430/492 (87.40%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           ++RIGRLVK+GLL++L+D SLPPC+SCLEGKMTKR FTGKG RAK  LEL+HSDLCGPMN
Sbjct: 234 LDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMN 293

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARGG+EYFISFIDDYSRY ++YL+++KS++ EKFKEYK EVEN   K IK LRSDRGG
Sbjct: 294 VKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGG 353

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMDL+FQDY+IEHGIQSQLS P  PQQNGVSERRNRTLLDMV SMMS++QLP SFWGYA
Sbjct: 354 EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYA 413

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           +ET ++IL NVPSKSVSETPFELW+GRK SL HFRIWGCPAHVLV NPKKLE RS+LC F
Sbjct: 414 VETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQF 473

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTT---DRPS 309
           +GYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+  SKLVL E +  +T   D   
Sbjct: 474 VGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVG 533

Query: 310 SSTKVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQ 369
            S++ VD+T   GQ+HP+Q L  PR SGR++ QP+RYLGL+E Q+VIPDDG+EDPL+YKQ
Sbjct: 534 PSSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 593

Query: 370 VMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKA 429
            MNDV+ D+W+KAMDLEMESMY NS W LVD P  VKPIGCKWIYKRKRD AGKVQTFKA
Sbjct: 594 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 653

Query: 430 RLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESI 489
           RLVAKGY Q+EG+DYEETFSPVAMLKSIRILLSI TFYDYEIWQMDVKTAFLNGNLEESI
Sbjct: 654 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 713

Query: 490 YMVQPEGFIQKG 499
           +M QPE FI +G
Sbjct: 714 FMSQPERFITQG 724

[Close]

BLAST of Cmc04g0104771.1 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 774.6 bits (1999), Expect = 5.1e-220
Identity = 373/492 (75.81%), Postives = 425/492 (86.38%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           ++RIGRLVK GLL++L+D SLPPC+SCLEGKMTKR FTGKG RAK  LEL+HSDLCGPMN
Sbjct: 360 LDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMN 419

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARG +EYFISFIDDYSRY ++YL+++KS++ EKFKEYK EVEN   K IK  RSDRGG
Sbjct: 420 VKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGG 479

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMDL FQDY+IEHGIQSQLS P  PQQNGVSERRNRTLLDMV SMMS++QLP SFWGYA
Sbjct: 480 EYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYA 539

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           +ET ++IL NVPSKSVSETPFELW+GRK SL HFRIWGCPAHVLV NPKKLE RS+LC F
Sbjct: 540 VETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQF 599

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTT---DRPS 309
           +GYPKE++GGLF+DP+EN+VFVSTNATFLEEDH+RNH+  SKLVL E +  +T   D   
Sbjct: 600 VGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVG 659

Query: 310 SSTKVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQ 369
            S++ VD+T   GQ+HP+Q L  PR SGR++ QP+RYLGL+E Q+VIPDDG+EDPL+YKQ
Sbjct: 660 PSSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 719

Query: 370 VMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKA 429
            MNDV+ D+W+KAMDLEMESMY NS W LVD P  VKPIGCKWIYKRKRD AGKVQTFKA
Sbjct: 720 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 779

Query: 430 RLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESI 489
           RLVAKGY +KEG+DYEETFS VAMLKSIRILLSI  FYDYEIWQMDVKTAFLNGNLEESI
Sbjct: 780 RLVAKGYTRKEGVDYEETFSSVAMLKSIRILLSIAKFYDYEIWQMDVKTAFLNGNLEESI 839

Query: 490 YMVQPEGFIQKG 499
           +M QPEGFI +G
Sbjct: 840 FMSQPEGFITQG 850

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.5e-94
Identity = 198/510 (38.82%), Postives = 295/510 (57.84%), Query Frame = 0


Query: 16  LVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMNVKARGG 75
           L K  L+S  +  ++ PCD CL GK  + SF     R    L+LV+SD+CGPM +++ GG
Sbjct: 440 LAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGG 499

Query: 76  YEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGGEYMDLQ 135
            +YF++FIDD SR   VY+++ K   F+ F+++   VE E+ + +K LRSD GGEY   +
Sbjct: 500 NKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSRE 559

Query: 136 FQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYALETTIY 195
           F++Y   HGI+ + +VP  PQ NGV+ER NRT+++ V SM+  ++LP SFWG A++T  Y
Sbjct: 560 FEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACY 619

Query: 196 ILKNVPSKSVS-ETPFELWKGRKGSLRHFRIWGCP--AHVLVQNPKKLERRSKLCLFIGY 255
           ++   PS  ++ E P  +W  ++ S  H +++GC   AHV  +   KL+ +S  C+FIGY
Sbjct: 620 LINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGY 679

Query: 256 PKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKN------TTDRPS 315
             E  G   +DP + KV  S +  F  E  +R     S+ V   I  N      T++ P+
Sbjct: 680 GDEEFGYRLWDPVKKKVIRSRDVVF-RESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPT 739

Query: 316 SSTKVVDKTRNIGQ-------------------THPAQ--ELGEP-RCSGRILRQPDRYL 375
           S+    D+    G+                    HP Q  E  +P R S R   +  RY 
Sbjct: 740 SAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRY- 799

Query: 376 GLSEAQIVIPDDGIEDPLTYKQVMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKP 435
             S   ++I DD   +P + K+V++    ++ +KAM  EMES+  N  + LV+ P   +P
Sbjct: 800 -PSTEYVLISDD--REPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRP 859

Query: 436 IGCKWIYKRKRDQAGKVQTFKARLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFY 495
           + CKW++K K+D   K+  +KARLV KG+ QK+GID++E FSPV  + SIR +LS+    
Sbjct: 860 LKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASL 919

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-62
Identity = 172/596 (28.86%), Postives = 280/596 (46.98%), Query Frame = 0


Query: 10   VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLE----LVHSDLC 69
            + R        LL+ LE  S   C+ CL GK  +  F  K L+ KT ++    +VHSD+C
Sbjct: 433  IKRKNMFSDQSLLNNLE-LSCEICEPCLNGKQARLPF--KQLKDKTHIKRPLFVVHSDVC 492

Query: 70   GPMNVKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRS 129
            GP+         YF+ F+D ++ Y   YLI+ KSD F  F+++  + E   +  +  L  
Sbjct: 493  GPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYI 552

Query: 130  DRGGEYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSF 189
            D G EY+  + + + ++ GI   L+VP  PQ NGVSER  RT+ +   +M+S ++L  SF
Sbjct: 553  DNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSF 612

Query: 190  WGYALETTIYILKNVPSKSV---SETPFELWKGRKGSLRHFRIWGCPAHVLVQNPK-KLE 249
            WG A+ T  Y++  +PS+++   S+TP+E+W  +K  L+H R++G   +V ++N + K +
Sbjct: 613  WGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFD 672

Query: 250  RRSKLCLFIGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNT 309
             +S   +F+GY  E  G   +D    K  V+ +    E + + +     + V  + SK +
Sbjct: 673  DKSFKSIFVGY--EPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKES 732

Query: 310  TDR--PSSSTKVV-----------------------------DKTRNIGQTHPAQE---- 369
             ++  P+ S K++                             + +R I QT    E    
Sbjct: 733  ENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKEC 792

Query: 370  ----------------------------LGEPRCSG--RILRQPDRYLGLSEAQIVIP-- 429
                                        L E + SG     R+ +    L E  I  P  
Sbjct: 793  DNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTK 852

Query: 430  DDGIE------------DPLTYKQ--------------VMNDV-----------NCDKWI 489
            +DGIE              ++Y +              + NDV           +   W 
Sbjct: 853  NDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWE 912

Query: 490  KAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYIQKE 494
            +A++ E+ +   N+ WT+  +P +   +  +W++  K ++ G    +KARLVA+G+ QK 
Sbjct: 913  EAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKY 972

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.8e-53
Identity = 153/594 (25.76%), Postives = 246/594 (41.41%), Query Frame = 0


Query: 33   CDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMNVKARGGYEYFISFIDDYSRYDHV 92
            C  CL  K  K  F+   + +   LE ++SD+     + +   Y Y++ F+D ++RY  +
Sbjct: 500  CSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWL 559

Query: 93   YLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSVP 152
            Y ++ KS   E F  +K  +EN     I T  SD GGE++ L   +Y  +HGI    S P
Sbjct: 560  YPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPP 619

Query: 153  SMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYALETTIYILKNVPSKSVS-ETPFE 212
              P+ NG+SER++R +++   +++S + +P ++W YA    +Y++  +P+  +  E+PF+
Sbjct: 620  HTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQ 679

Query: 213  LWKGRKGSLRHFRIWGCPAHVLVQ--NPKKLERRSKLCLFIGYPKESKGGLFYDPQENKV 272
               G   +    R++GC  +  ++  N  KL+ +S+ C+F+GY       L    Q +++
Sbjct: 680  KLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRL 739

Query: 273  FVSTNATFLE---------------------------------------------EDH-- 332
            ++S +  F E                                             + H  
Sbjct: 740  YISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHA 799

Query: 333  ----------IRNHQTHSKLVLEEISKN----------------TTDRPSSSTKVVDKTR 392
                       RN Q  S  +    S +                 T +P+ +      ++
Sbjct: 800  ATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQ 859

Query: 393  NIGQTHP--------AQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQVM 452
            N  Q +P        AQ L  P  S      P      S      P   I  P    Q++
Sbjct: 860  NTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIV 919

Query: 453  NDVN--------------------------------------------CDKWIKAMDLEM 498
            N+ N                                             ++W  AM  E+
Sbjct: 920  NNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEI 979

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.5e-53
Identity = 165/632 (26.11%), Postives = 264/632 (41.77%), Query Frame = 0


Query: 11   NRIGRLVKSGLLSQLEDNSLP---------PCDSCLEGKMTKRSFTGKGLRAKTSLELVH 70
            +R+G    + L S + ++SLP          C  C   K  K  F+   + +   LE ++
Sbjct: 448  SRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIY 507

Query: 71   SDLCGPMNVKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIK 130
            SD+     + +   Y Y++ F+D ++RY  +Y ++ KS   + F  +K  VEN     I 
Sbjct: 508  SDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIG 567

Query: 131  TLRSDRGGEYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQL 190
            TL SD GGE++ L  +DYL +HGI    S P  P+ NG+SER++R +++M  +++S + +
Sbjct: 568  TLYSDNGGEFVVL--RDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASV 627

Query: 191  PDSFWGYALETTIYILKNVPSKSVS-ETPFELWKGRKGSLRHFRIWGCPAHVLVQ--NPK 250
            P ++W YA    +Y++  +P+  +  ++PF+   G+  +    +++GC  +  ++  N  
Sbjct: 628  PKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRH 687

Query: 251  KLERRSKLCLFIGYPKESKGGLFYDPQENKVFVSTNATFLE------------------- 310
            KLE +SK C F+GY       L       +++ S +  F E                   
Sbjct: 688  KLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQR 747

Query: 311  EDHIRNHQTHSKLVLEEI----------SKNTTDRPSSSTKVVDKTRNIGQTHPAQELGE 370
             D   N  +H+ L    +            +T+ RP SS   +  T+      P+  +  
Sbjct: 748  SDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISS 807

Query: 371  PRCS-------------------------GRIL----------RQPDRYLGLSEAQIVIP 430
            P  S                           IL            P++   L ++ I  P
Sbjct: 808  PSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSP 867

Query: 431  ----------------------------------------------------DDGI---- 490
                                                                 DGI    
Sbjct: 868  HIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPN 927

Query: 491  ------------EDPLTYKQVMNDVNCDKWIKAMDLEMESMYSNSFWTLV-DQPNDVKPI 498
                         +P T  Q M D   D+W +AM  E+ +   N  W LV   P  V  +
Sbjct: 928  QKYSYATSLAANSEPRTAIQAMKD---DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIV 987

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy Swiss-Prot
Match: Q12193 (Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-BR PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-17
Identity = 70/255 (27.45%), Postives = 120/255 (47.06%), Query Frame = 0


Query: 33  CDSCLEGKMTK-RSFTGKGLRAKTSLE---LVHSDLCGPMNVKARGGYEYFISFIDDYSR 92
           C  CL GK TK R   G  L+ + S E    +H+D+ GP++   +    YFISF D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696

Query: 93  YDHVYLIQNKSDS--FEKFKEYKVEVENESDKTIKTLRSDRGGEYMDLQFQDYLIEHGIQ 152
           +  VY + ++ +    + F      ++N+   ++  ++ DRG EY +     +L ++GI 
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756

Query: 153 SQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYALETTIYILKNVPSKSVS 212
              +  +  + +GV+ER NRTLLD   + +  S LP+  W  A+E +  I++N  +   S
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFST-IVRNSLASPKS 816

Query: 213 ETPFELWKGRKG-SLRHFRIWGCPAHVLVQNP-KKLERRSKLCLFIGYPKESKGGLFYDP 272
           +       G  G  +     +G P  V   NP  K+  R      +   + S G + Y P
Sbjct: 817 KKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLP 876

Query: 273 QENKVFVSTNATFLE 280
              K   +TN   L+
Sbjct: 877 SLKKTVDTTNYVILQ 890

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 845.9 bits (2184), Expect = 8.7e-242
Identity = 410/486 (84.36%), Postives = 443/486 (91.15%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           +NRI RLVKSG+L+QLEDNSLPPC+SCLEGKMTKRSFTGKGLRAK  LELVHSDLCGPMN
Sbjct: 454 LNRIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMN 513

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARGGYEYFISFIDD+SRY HVYL+ +KS+SFEKFKEYK EVENE  KTIKTLRSDRGG
Sbjct: 514 VKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGG 573

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMD +FQDYLIE GIQSQLS PS PQQNGVSERRNRTLLDMV SMMS++QLPDSFWGYA
Sbjct: 574 EYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYA 633

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           LET I+IL NVPSKSV ETP+ELWKGRK SLR+FRIWGCPAHVLVQNPKKLE RSKLCLF
Sbjct: 634 LETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLF 693

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTTDRPSSST 309
           +GYPKES+GGLFY PQENKVFVSTNATFLEEDH RNHQ  SK+VL+E+ KN TD+PSSST
Sbjct: 694 VGYPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSST 753

Query: 310 KVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQVMN 369
           KVVDK     Q+H +QEL  PR SGR++ QP+RYLGL E QI+IPDDG+EDPLTYKQ MN
Sbjct: 754 KVVDKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMN 813

Query: 370 DVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLV 429
           DV+ D+WIKAM+LEMESMY NS WTLVD P+DVKPIGCKWIYKRKRDQAGKVQTFKARLV
Sbjct: 814 DVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLV 873

Query: 430 AKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESIYMV 489
           AKGY QKEG+DYEETFSPVAMLKSIRILLSI TFY+YEIWQMDVKTAFLNGNLEESIYMV
Sbjct: 874 AKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMV 933

Query: 490 QPEGFI 496
           QPEGFI
Sbjct: 934 QPEGFI 939

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 787.7 bits (2033), Expect = 2.8e-224
Identity = 378/492 (76.83%), Postives = 431/492 (87.60%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           ++RIGRLVK+GLL++L+D SLPPC+SCLEGKMTKR FTGKG RAK  LEL+HSDLCGPMN
Sbjct: 360 LDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMN 419

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARGG+EYFISFIDDYSRY ++YL+++KS++ EKFKEYK EVEN   K IK LRSDRGG
Sbjct: 420 VKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGG 479

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMDL+FQDY+IEHGIQSQLS P  PQQNGVSERRNRTLLDMV SMMS++QLP SFWGYA
Sbjct: 480 EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYA 539

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           +ET ++IL NVPSKSVSETPFELW+GRK SL HFRIWGCPAHVLV NPKKLE RS+LC F
Sbjct: 540 VETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQF 599

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTT---DRPS 309
           +GYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+  SKLVL E +  +T   D   
Sbjct: 600 VGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVG 659

Query: 310 SSTKVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQ 369
            S++ VD+T   GQ+HP+Q L  PR SGR++ QP+RYLGL+E Q+VIPDDG+EDPL+YKQ
Sbjct: 660 PSSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 719

Query: 370 VMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKA 429
            MNDV+ D+W+KAMDLEMESMY NS W LVD P  VKPIGCKWIYKRKRD AGKVQTFKA
Sbjct: 720 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 779

Query: 430 RLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESI 489
           RLVAKGY Q+EG+DYEETFSPVAMLKSIRILLSI TFYDYEIWQMDVKTAFLNGNLEESI
Sbjct: 780 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 839

Query: 490 YMVQPEGFIQKG 499
           +M QPEGFI +G
Sbjct: 840 FMSQPEGFITQG 850

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 787.7 bits (2033), Expect = 2.8e-224
Identity = 378/492 (76.83%), Postives = 431/492 (87.60%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           ++RIGRLVK+GLL++L+D SLPPC+SCLEGKMTKR FTGKG RAK  LEL+HSDLCGPMN
Sbjct: 234 LDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMN 293

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARGG+EYFISFIDDYSRY ++YL+++KS++ EKFKEYK EVEN   K IK LRSDRGG
Sbjct: 294 VKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGG 353

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMDL+FQDY+IEHGIQSQLS P  PQQNGVSERRNRTLLDMV SMMS++QLP SFWGYA
Sbjct: 354 EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYA 413

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           +ET ++IL NVPSKSVSETPFELW+GRK SL HFRIWGCPAHVLV NPKKLE RS+LC F
Sbjct: 414 VETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQF 473

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTT---DRPS 309
           +GYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+  SKLVL E +  +T   D   
Sbjct: 474 VGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVG 533

Query: 310 SSTKVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQ 369
            S++ VD+T   GQ+HP+Q L  PR SGR++ QP+RYLGL+E Q+VIPDDG+EDPL+YKQ
Sbjct: 534 PSSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 593

Query: 370 VMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKA 429
            MNDV+ D+W+KAMDLEMESMY NS W LVD P  VKPIGCKWIYKRKRD AGKVQTFKA
Sbjct: 594 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 653

Query: 430 RLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESI 489
           RLVAKGY Q+EG+DYEETFSPVAMLKSIRILLSI TFYDYEIWQMDVKTAFLNGNLEESI
Sbjct: 654 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 713

Query: 490 YMVQPEGFIQKG 499
           +M QPEGFI +G
Sbjct: 714 FMSQPEGFITQG 724

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 784.6 bits (2025), Expect = 2.4e-223
Identity = 377/492 (76.63%), Postives = 430/492 (87.40%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           ++RIGRLVK+GLL++L+D SLPPC+SCLEGKMTKR FTGKG RAK  LEL+HSDLCGPMN
Sbjct: 234 LDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMN 293

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARGG+EYFISFIDDYSRY ++YL+++KS++ EKFKEYK EVEN   K IK LRSDRGG
Sbjct: 294 VKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGG 353

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMDL+FQDY+IEHGIQSQLS P  PQQNGVSERRNRTLLDMV SMMS++QLP SFWGYA
Sbjct: 354 EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYA 413

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           +ET ++IL NVPSKSVSETPFELW+GRK SL HFRIWGCPAHVLV NPKKLE RS+LC F
Sbjct: 414 VETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQF 473

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTT---DRPS 309
           +GYPKE++GGLF+DPQEN+VFVSTNATFLEEDH+RNH+  SKLVL E +  +T   D   
Sbjct: 474 VGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVG 533

Query: 310 SSTKVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQ 369
            S++ VD+T   GQ+HP+Q L  PR SGR++ QP+RYLGL+E Q+VIPDDG+EDPL+YKQ
Sbjct: 534 PSSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 593

Query: 370 VMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKA 429
            MNDV+ D+W+KAMDLEMESMY NS W LVD P  VKPIGCKWIYKRKRD AGKVQTFKA
Sbjct: 594 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 653

Query: 430 RLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESI 489
           RLVAKGY Q+EG+DYEETFSPVAMLKSIRILLSI TFYDYEIWQMDVKTAFLNGNLEESI
Sbjct: 654 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 713

Query: 490 YMVQPEGFIQKG 499
           +M QPE FI +G
Sbjct: 714 FMSQPERFITQG 724

[Close]

BLAST of Cmc04g0104771.1 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 774.6 bits (1999), Expect = 2.5e-220
Identity = 373/492 (75.81%), Postives = 425/492 (86.38%), Query Frame = 0


Query: 10  VNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKMTKRSFTGKGLRAKTSLELVHSDLCGPMN 69
           ++RIGRLVK GLL++L+D SLPPC+SCLEGKMTKR FTGKG RAK  LEL+HSDLCGPMN
Sbjct: 360 LDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMN 419

Query: 70  VKARGGYEYFISFIDDYSRYDHVYLIQNKSDSFEKFKEYKVEVENESDKTIKTLRSDRGG 129
           VKARG +EYFISFIDDYSRY ++YL+++KS++ EKFKEYK EVEN   K IK  RSDRGG
Sbjct: 420 VKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGG 479

Query: 130 EYMDLQFQDYLIEHGIQSQLSVPSMPQQNGVSERRNRTLLDMVHSMMSFSQLPDSFWGYA 189
           EYMDL FQDY+IEHGIQSQLS P  PQQNGVSERRNRTLLDMV SMMS++QLP SFWGYA
Sbjct: 480 EYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYA 539

Query: 190 LETTIYILKNVPSKSVSETPFELWKGRKGSLRHFRIWGCPAHVLVQNPKKLERRSKLCLF 249
           +ET ++IL NVPSKSVSETPFELW+GRK SL HFRIWGCPAHVLV NPKKLE RS+LC F
Sbjct: 540 VETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQF 599

Query: 250 IGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTHSKLVLEEISKNTT---DRPS 309
           +GYPKE++GGLF+DP+EN+VFVSTNATFLEEDH+RNH+  SKLVL E +  +T   D   
Sbjct: 600 VGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVG 659

Query: 310 SSTKVVDKTRNIGQTHPAQELGEPRCSGRILRQPDRYLGLSEAQIVIPDDGIEDPLTYKQ 369
            S++ VD+T   GQ+HP+Q L  PR SGR++ QP+RYLGL+E Q+VIPDDG+EDPL+YKQ
Sbjct: 660 PSSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 719

Query: 370 VMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKA 429
            MNDV+ D+W+KAMDLEMESMY NS W LVD P  VKPIGCKWIYKRKRD AGKVQTFKA
Sbjct: 720 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 779

Query: 430 RLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFLNGNLEESI 489
           RLVAKGY +KEG+DYEETFS VAMLKSIRILLSI  FYDYEIWQMDVKTAFLNGNLEESI
Sbjct: 780 RLVAKGYTRKEGVDYEETFSSVAMLKSIRILLSIAKFYDYEIWQMDVKTAFLNGNLEESI 839

Query: 490 YMVQPEGFIQKG 499
           +M QPEGFI +G
Sbjct: 840 FMSQPEGFITQG 850

[Close]

BLAST of Cmc04g0104771.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 133.7 bits (335), Expect = 4.2e-31
Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 0


Query: 359 EDPLTYKQVMNDVNCDKWIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQA 418
           ++P TY +    +    W  AMD E+ +M +   W +   P + KPIGCKW+YK K +  
Sbjct: 84  KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 419 GKVQTFKARLVAKGYIQKEGIDYEETFSPVAMLKSIRILLSIDTFYDYEIWQMDVKTAFL 478
           G ++ +KARLVAKGY Q+EGID+ ETFSPV  L S++++L+I   Y++ + Q+D+  AFL
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 203

Query: 479 NGNLEESIYMVQPEGF 495
           NG+L+E IYM  P G+
Sbjct: 204 NGDLDEEIYMKLPPGY 216

[Close]

BLAST of Cmc04g0104771.1 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 80.5 bits (197), Expect = 4.2e-15
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 376 WIKAMDLEMESMYSNSFWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYIQ 435
           W +AM  E++++  N  W LV  P +   +GCKW++K K    G +   KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 436 KEGIDYEETFSPVAMLKSIRILLSI 461
           +EGI + ET+SPV    +IR +L++
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNV 124

[Close]

BLAST of Cmc04g0104771.1 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 5.2e-05
Identity = 24/82 (29.27%), Postives = 41/82 (50.00%), Query Frame = 0


Query: 165 NRTLLDMVHSMMSFSQLPDSFWGYALETTIYILKNVPSKSVS-ETPFELWKGRKGSLRHF 224
           NRT+++ V SM+    LP +F   A  T ++I+   PS +++   P E+W     +  + 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 225 RIWGCPAHVLVQNPKKLERRSK 246
           R +GC A++     K   R  K
Sbjct: 62  RRFGCVAYIHCDEGKLKPRAKK 83

The following BLAST results are available for this feature:

BLAST of Cmc04g0104771.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.8e-241	84.36	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	5.8e-224	76.83	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	5.8e-224	76.83	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02840.1	4.9e-223	76.63	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	5.1e-220	75.81	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0104771.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-94	38.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-62	28.86	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.8e-53	25.76	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	6.5e-53	26.11	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q12193	1.2e-17	27.45	Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2...	[more]

BLAST of Cmc04g0104771.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	8.7e-242	84.36	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	2.8e-224	76.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	2.8e-224	76.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5D3BUN8	2.4e-223	76.63	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]
A0A5A7T2V9	2.5e-220	75.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]

BLAST of Cmc04g0104771.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.2e-31	44.85	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.2e-15	42.35	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00710.1	5.2e-05	29.27	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 56..152 e-value: 3.5E-9 score: 36.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 52..217 score: 22.048107
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 51..229 e-value: 8.2E-37 score: 128.4
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 390..496 e-value: 1.0E-36 score: 126.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 33..494
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 52..211

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0104771	Cmc04g0104771	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0104771.1-exon	Cmc04g0104771.1-exon-CMiso1.1chr04:22910340..22911836	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0104771.1-cds	Cmc04g0104771.1-cds-CMiso1.1chr04:22910340..22911836	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0104771.1	Cmc04g0104771.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0008270	zinc ion binding