Cmc04g0094981.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094981.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr04: 8113642 .. 8114097 (+)
Sequence length	456
RNA-Seq Expression	Cmc04g0094981.1
Synteny	Cmc04g0094981.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACCAGAAGGAAAGAAAAGATTGATTACATGAAGATGGTTGCTGATTTATGTTATATTTCCACCATTGAACCTTCTACTACTGACTCTGCTCCCAAAGATGAGTATTGGCTAAATGCTATGCAAGAGGAGCTACTCCAATTTAGACGAAACAATGTCTGGACATTAGTTTCAAAGCCAGAAGGTGTAAACGTTATTGGCATTAAATGGGTGTTTAAAAATAAGACTGATGAAGTTGGATGTGTGACGAAAAATAAAGCCAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTATTTACTTTGATGAAACGTTTGCTCCTGTTGCTCAACTTGAAGCCATTCGACTATTACTTGGTATATCATGCATACAGAAACTTAAATTGTATCAGATGGATGTAAAGAGTGCCTTCTTGAATGGTTATTTGAATGAGGTGGTTTATGTTGCTTAA

mRNA sequence

ATGCAGACCAGAAGGAAAGAAAAGATTGATTACATGAAGATGGTTGCTGATTTATGTTATATTTCCACCATTGAACCTTCTACTACTGACTCTGCTCCCAAAGATGAGTATTGGCTAAATGCTATGCAAGAGGAGCTACTCCAATTTAGACGAAACAATGTCTGGACATTAGTTTCAAAGCCAGAAGGTGTAAACGTTATTGGCATTAAATGGGTGTTTAAAAATAAGACTGATGAAGTTGGATGTGTGACGAAAAATAAAGCCAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTATTTACTTTGATGAAACGTTTGCTCCTGTTGCTCAACTTGAAGCCATTCGACTATTACTTGGTATATCATGCATACAGAAACTTAAATTGTATCAGATGGATGTAAAGAGTGCCTTCTTGAATGGTTATTTGAATGAGGTGGTTTATGTTGCTTAA

Coding sequence (CDS)

ATGCAGACCAGAAGGAAAGAAAAGATTGATTACATGAAGATGGTTGCTGATTTATGTTATATTTCCACCATTGAACCTTCTACTACTGACTCTGCTCCCAAAGATGAGTATTGGCTAAATGCTATGCAAGAGGAGCTACTCCAATTTAGACGAAACAATGTCTGGACATTAGTTTCAAAGCCAGAAGGTGTAAACGTTATTGGCATTAAATGGGTGTTTAAAAATAAGACTGATGAAGTTGGATGTGTGACGAAAAATAAAGCCAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTATTTACTTTGATGAAACGTTTGCTCCTGTTGCTCAACTTGAAGCCATTCGACTATTACTTGGTATATCATGCATACAGAAACTTAAATTGTATCAGATGGATGTAAAGAGTGCCTTCTTGAATGGTTATTTGAATGAGGTGGTTTATGTTGCTTAA

Protein sequence

MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLLGISCIQKLKLYQMDVKSAFLNGYLNEVVYVA

Homology

[Close]

BLAST of Cmc04g0094981.1 vs. NCBI nr
Match: KAA0066164.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 3.5e-71
Identity = 137/151 (90.73%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDYMKMVADLCYIST+EPST DSA +DEYWLNAMQEELLQFR+NNVWTLVSK
Sbjct: 538 MQTRRKEKIDYMKMVADLCYISTVEPSTVDSALRDEYWLNAMQEELLQFRQNNVWTLVSK 597

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PEGVNVIG KWVFKNKTDE GCVTKNKA+LVAQGYTQVEGI FDETFA VA+LEAIRLLL
Sbjct: 598 PEGVNVIGTKWVFKNKTDEAGCVTKNKAKLVAQGYTQVEGIDFDETFASVARLEAIRLLL 657

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKSAFL+GYLNE VYVA
Sbjct: 658 GISCIQKFKLYQMDVKSAFLDGYLNEEVYVA 688

[Close]

BLAST of Cmc04g0094981.1 vs. NCBI nr
Match: KAA0066255.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ97667.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 135/151 (89.40%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDYM MVADLCYIST EPST D A +DEYWLNAMQEELLQFRRNNVWTLVSK
Sbjct: 589 MQTRRKEKIDYMNMVADLCYISTFEPSTVDYALRDEYWLNAMQEELLQFRRNNVWTLVSK 648

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PEGVNVIG KWVFKNKTDE GCV K KARLVAQGYTQVEGI FDETFAPVA++EAIRLLL
Sbjct: 649 PEGVNVIGTKWVFKNKTDEAGCVAKYKARLVAQGYTQVEGIDFDETFAPVARVEAIRLLL 708

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKSAFLNGYLN  VYVA
Sbjct: 709 GISCIQKFKLYQMDVKSAFLNGYLNGEVYVA 739

[Close]

BLAST of Cmc04g0094981.1 vs. NCBI nr
Match: TYJ98791.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 135/151 (89.40%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDYMKMVADLCYIST EPST D + +DEY LNAMQEELLQF+RNNVWTLV K
Sbjct: 642 MQTRRKEKIDYMKMVADLCYISTFEPSTVDFSLRDEYLLNAMQEELLQFKRNNVWTLVLK 701

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PEGVNVIG KWVFKNKTDE GCVTKNKARLVAQGYTQVEGI FDETF+PVA+LEAIRLLL
Sbjct: 702 PEGVNVIGTKWVFKNKTDEAGCVTKNKARLVAQGYTQVEGIDFDETFSPVARLEAIRLLL 761

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKSAFLNGYLNE VYVA
Sbjct: 762 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVA 792

[Close]

BLAST of Cmc04g0094981.1 vs. NCBI nr
Match: KAA0033543.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95644.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 4.2e-69
Identity = 135/151 (89.40%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDY KMVADLCY STIEPST DSA K+EYWLNAMQE+LLQFRRNNVWTLVSK
Sbjct: 237 MQTRRKEKIDYTKMVADLCYTSTIEPSTVDSALKNEYWLNAMQEKLLQFRRNNVWTLVSK 296

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PEGVNVIG KWVFKNKTDE  CVTKNKARLVAQGY QV+GI F+ETFAPVA+LEAIRLLL
Sbjct: 297 PEGVNVIGTKWVFKNKTDEARCVTKNKARLVAQGYIQVKGIDFEETFAPVARLEAIRLLL 356

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKSAFLNGYLNE VYVA
Sbjct: 357 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVA 387

[Close]

BLAST of Cmc04g0094981.1 vs. NCBI nr
Match: TYK13607.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 136/151 (90.07%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCY STIEPST DSA KDEYWLNAMQEELLQFR+NNVWTLVSK
Sbjct: 90  MQTRRKEKIDYMKMVVDLCYTSTIEPSTVDSALKDEYWLNAMQEELLQFRQNNVWTLVSK 149

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PE VNVIG K VFKNKT EVGCVTKNKARLVAQGYTQV+GI FDETFAPVA LEAIRLLL
Sbjct: 150 PEDVNVIGTKLVFKNKTGEVGCVTKNKARLVAQGYTQVKGIDFDETFAPVALLEAIRLLL 209

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKS FLNGYLNE VYVA
Sbjct: 210 GISCIQKFKLYQMDVKSVFLNGYLNEEVYVA 240

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 38   WLNAMQEELLQFRRNNVWTLVSKPEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQ 97
            W  A+  EL   + NN WT+  +PE  N++  +WVF  K +E+G   + KARLVA+G+TQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 98   VEGIYFDETFAPVAQLEAIRLLLGISCIQKLKLYQMDVKSAFLNGYLNEVVYV 151
               I ++ETFAPVA++ + R +L +     LK++QMDVK+AFLNG L E +Y+
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYM 1018

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.9e-21
Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 25   EPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSKPEG-VNVIGIKWVFKNKTDEVGCV 84
            EP T   A KDE W NAM  E+     N+ W LV  P   V ++G +W+F  K +  G +
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 85   TKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLLGISCIQKLKLYQMDVKSAFLNGY 144
             + KARLVA+GY Q  G+ + ETF+PV +  +IR++LG++  +   + Q+DV +AFL G 
Sbjct: 1015 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 145  LNEVVYVA 152
            L + VY++
Sbjct: 1075 LTDDVYMS 1082

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-20
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTI--EPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLV 60
           M TR K  I+ +     L   +TI  EP +   A KD  W  AMQEEL    RN  W LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 61  SKPEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRL 120
             P   N++G KWVFK K    G + + KARLVA+G+ Q EGIYF ET++PV +   IR 
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

Query: 121 LLGISCIQKLKLYQ 133
           +L ++  Q+L++ Q
Sbjct: 121 ILNVA--QQLEVGQ 132

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-20
Identity = 50/128 (39.06%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 25   EPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLV-SKPEGVNVIGIKWVFKNKTDEVGCV 84
            EP T   A KD+ W  AM  E+     N+ W LV   P  V ++G +W+F  K +  G +
Sbjct: 938  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 997

Query: 85   TKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLLGISCIQKLKLYQMDVKSAFLNGY 144
             + KARLVA+GY Q  G+ + ETF+PV +  +IR++LG++  +   + Q+DV +AFL G 
Sbjct: 998  NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1057

Query: 145  LNEVVYVA 152
            L + VY++
Sbjct: 1058 LTDEVYMS 1065

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-19
Identity = 49/120 (40.83%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 31  SAPKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGIKWVFKNKTDEVGCVTKNKARL 90
           S P+    + AMQEE+   ++N  + LV  P+G   +  KWVFK K D    + + KARL
Sbjct: 819 SHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARL 878

Query: 91  VAQGYTQVEGIYFDETFAPVAQLEAIRLLLGISCIQKLKLYQMDVKSAFLNGYLNEVVYV 150
           V +G+ Q +GI FDE F+PV ++ +IR +L ++    L++ Q+DVK+AFL+G L E +Y+
Sbjct: 879 VVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYM 938

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy TrEMBL
Match: A0A5D3CXU0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00820 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 137/151 (90.73%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDYMKMVADLCYIST+EPST DSA +DEYWLNAMQEELLQFR+NNVWTLVSK
Sbjct: 538 MQTRRKEKIDYMKMVADLCYISTVEPSTVDSALRDEYWLNAMQEELLQFRQNNVWTLVSK 597

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PEGVNVIG KWVFKNKTDE GCVTKNKA+LVAQGYTQVEGI FDETFA VA+LEAIRLLL
Sbjct: 598 PEGVNVIGTKWVFKNKTDEAGCVTKNKAKLVAQGYTQVEGIDFDETFASVARLEAIRLLL 657

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKSAFL+GYLNE VYVA
Sbjct: 658 GISCIQKFKLYQMDVKSAFLDGYLNEEVYVA 688

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy TrEMBL
Match: A0A5D3BEV2 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00360 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 135/151 (89.40%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDYM MVADLCYIST EPST D A +DEYWLNAMQEELLQFRRNNVWTLVSK
Sbjct: 589 MQTRRKEKIDYMNMVADLCYISTFEPSTVDYALRDEYWLNAMQEELLQFRRNNVWTLVSK 648

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PEGVNVIG KWVFKNKTDE GCV K KARLVAQGYTQVEGI FDETFAPVA++EAIRLLL
Sbjct: 649 PEGVNVIGTKWVFKNKTDEAGCVAKYKARLVAQGYTQVEGIDFDETFAPVARVEAIRLLL 708

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKSAFLNGYLN  VYVA
Sbjct: 709 GISCIQKFKLYQMDVKSAFLNGYLNGEVYVA 739

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy TrEMBL
Match: A0A5D3BJA9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G001000 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 135/151 (89.40%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDYMKMVADLCYIST EPST D + +DEY LNAMQEELLQF+RNNVWTLV K
Sbjct: 642 MQTRRKEKIDYMKMVADLCYISTFEPSTVDFSLRDEYLLNAMQEELLQFKRNNVWTLVLK 701

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PEGVNVIG KWVFKNKTDE GCVTKNKARLVAQGYTQVEGI FDETF+PVA+LEAIRLLL
Sbjct: 702 PEGVNVIGTKWVFKNKTDEAGCVTKNKARLVAQGYTQVEGIDFDETFSPVARLEAIRLLL 761

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKSAFLNGYLNE VYVA
Sbjct: 762 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVA 792

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy TrEMBL
Match: A0A5D3B9N4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00690 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 135/151 (89.40%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDY KMVADLCY STIEPST DSA K+EYWLNAMQE+LLQFRRNNVWTLVSK
Sbjct: 237 MQTRRKEKIDYTKMVADLCYTSTIEPSTVDSALKNEYWLNAMQEKLLQFRRNNVWTLVSK 296

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PEGVNVIG KWVFKNKTDE  CVTKNKARLVAQGY QV+GI F+ETFAPVA+LEAIRLLL
Sbjct: 297 PEGVNVIGTKWVFKNKTDEARCVTKNKARLVAQGYIQVKGIDFEETFAPVARLEAIRLLL 356

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKSAFLNGYLNE VYVA
Sbjct: 357 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVA 387

[Close]

BLAST of Cmc04g0094981.1 vs. ExPASy TrEMBL
Match: A0A5D3CNZ6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001080 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.8e-69
Identity = 136/151 (90.07%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCY STIEPST DSA KDEYWLNAMQEELLQFR+NNVWTLVSK
Sbjct: 90  MQTRRKEKIDYMKMVVDLCYTSTIEPSTVDSALKDEYWLNAMQEELLQFRQNNVWTLVSK 149

Query: 61  PEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLL 120
           PE VNVIG K VFKNKT EVGCVTKNKARLVAQGYTQV+GI FDETFAPVA LEAIRLLL
Sbjct: 150 PEDVNVIGTKLVFKNKTGEVGCVTKNKARLVAQGYTQVKGIDFDETFAPVALLEAIRLLL 209

Query: 121 GISCIQKLKLYQMDVKSAFLNGYLNEVVYVA 152
           GISCIQK KLYQMDVKS FLNGYLNE VYVA
Sbjct: 210 GISCIQKFKLYQMDVKSVFLNGYLNEEVYVA 240

[Close]

BLAST of Cmc04g0094981.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-26
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 18  LCYISTIEPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLVSKPEGVNVIGIKWVFKNKT 77
           +C     EPST + A +   W  AM +E+      + W + + P     IG KWV+K K 
Sbjct: 78  VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137

Query: 78  DEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRLLLGISCIQKLKLYQMDVKS 137
           +  G + + KARLVA+GYTQ EGI F ETF+PV +L +++L+L IS I    L+Q+D+ +
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197

Query: 138 AFLNGYLNEVVYV 151
           AFLNG L+E +Y+
Sbjct: 198 AFLNGDLDEEIYM 210

[Close]

BLAST of Cmc04g0094981.1 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-21
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVADLCYISTI--EPSTTDSAPKDEYWLNAMQEELLQFRRNNVWTLV 60
           M TR K  I+ +     L   +TI  EP +   A KD  W  AMQEEL    RN  W LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 61  SKPEGVNVIGIKWVFKNKTDEVGCVTKNKARLVAQGYTQVEGIYFDETFAPVAQLEAIRL 120
             P   N++G KWVFK K    G + + KARLVA+G+ Q EGIYF ET++PV +   IR 
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

Query: 121 LLGISCIQKLKLYQ 133
           +L ++  Q+L++ Q
Sbjct: 121 ILNVA--QQLEVGQ 132

The following BLAST results are available for this feature:

BLAST of Cmc04g0094981.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066164.1	3.5e-71	90.73	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [...	[more]
KAA0066255.1	3.2e-69	89.40	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ97667.1 gag-pol polyprotein [...	[more]
TYJ98791.1	3.2e-69	89.40	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0033543.1	4.2e-69	89.40	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95644.1 gag-pol polyprotein [...	[more]
TYK13607.1	1.6e-68	90.07	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0094981.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	1.1e-22	45.13	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	9.9e-21	40.63	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	2.9e-20	43.28	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	6.4e-20	39.06	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	2.4e-19	40.83	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Cmc04g0094981.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXU0	1.7e-71	90.73	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G...	[more]
A0A5D3BEV2	1.6e-69	89.40	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G0...	[more]
A0A5D3BJA9	1.6e-69	89.40	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G...	[more]
A0A5D3B9N4	2.0e-69	89.40	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G...	[more]
A0A5D3CNZ6	7.8e-69	90.07	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G...	[more]

BLAST of Cmc04g0094981.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.7e-26	42.11	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.0e-21	43.28	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 52..150 e-value: 2.8E-32 score: 112.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 31..150

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0094981	Cmc04g0094981	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0094981.1-exon	Cmc04g0094981.1-exon-CMiso1.1chr04:8113642..8114097	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0094981.1-cds	Cmc04g0094981.1-cds-CMiso1.1chr04:8113642..8114097	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0094981.1	Cmc04g0094981.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding