Cmc04g0094721.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094721.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 7673881 .. 7675236 (-)
Sequence length	1293
RNA-Seq Expression	Cmc04g0094721.1
Synteny	Cmc04g0094721.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAGGTAATCTCAACCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCAGTGGTGAGGGACTATCCAGATGTCTTTCCTGAAGAACTTCCAGGGTTACATCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCAGTTGGGATATCATCAACTGAGGATTAAGGATGGTGATGTACCGAAGACAGCTTTTCGTTCCAGATATGGACACTATGAGTTCATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATTGTGTTTATTGATGATATCTTGATATACTCCAAGACGGAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTAGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTCCTAGGCCATGTGGTTTCTAAGGATGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAATCACCTGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGAGGTTTGTGGAAAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCATGTGAAGACAGTTTCCAAAACCTTAAACAGAAGCTAGTTATTGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTAATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAATGA

mRNA sequence

ATGCCTCAGGTAATCTCAACCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCAGTGGTGAGGGACTATCCAGATGTCTTTCCTGAAGAACTTCCAGGGTTACATCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCAGTTGGGATATCATCAACTGAGGATTAAGGATGGTGATGTACCGAAGACAGCTTTTCGTTCCAGATATGGACACTATGAGTTCATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATTGTGTTTATTGATGATATCTTGATATACTCCAAGACGGAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTAGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTCCTAGGCCATGTGGTTTCTAAGGATGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAATCACCTGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGAAGGGAGCTCCTTTTGTTTGGAGCATGTGAAGACAGTTTCCAAAACCTTAAACAGAAGCTAGTTATTGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTAATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAATGA

Coding sequence (CDS)

ATGCCTCAGGTAATCTCAACCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCAGTGGTGAGGGACTATCCAGATGTCTTTCCTGAAGAACTTCCAGGGTTACATCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCAGTTGGGATATCATCAACTGAGGATTAAGGATGGTGATGTACCGAAGACAGCTTTTCGTTCCAGATATGGACACTATGAGTTCATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATTGTGTTTATTGATGATATCTTGATATACTCCAAGACGGAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTAGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTCCTAGGCCATGTGGTTTCTAAGGATGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAATCACCTGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGAAGGGAGCTCCTTTTGTTTGGAGCATGTGAAGACAGTTTCCAAAACCTTAAACAGAAGCTAGTTATTGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTAATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAATGA

Protein sequence

MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTVSEVRSFLGLAGRELLLFGACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ

Homology

[Close]

BLAST of Cmc04g0094721.1 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 812.8 bits (2098), Expect = 1.4e-231
Identity = 414/453 (91.39%), Postives = 418/453 (92.27%), Query Frame = 0


Query: 1   MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
           +PQVIS IRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 500 LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 559

Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 560 VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 619

Query: 121 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
           GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKD DVPK
Sbjct: 620 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 679

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
           TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 680 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 739

Query: 241 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
           EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 740 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 799

Query: 301 SEVRSFLGLAG----------------RELLLFG-------ACEDSFQNLKQKLVIAPVL 360
           SEVRSFLGLAG                 +L   G       ACEDSFQNLKQKLV APVL
Sbjct: 800 SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL 859

Query: 361 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
           TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 860 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 919

Query: 421 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 431
           IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ
Sbjct: 920 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 952

[Close]

BLAST of Cmc04g0094721.1 vs. NCBI nr
Match: KAA0043391.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 811.2 bits (2094), Expect = 4.2e-231
Identity = 413/453 (91.17%), Postives = 418/453 (92.27%), Query Frame = 0


Query: 1    MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
            +PQVIS IRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 826  LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 885

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 886  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 945

Query: 121  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
            GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKD DVPK
Sbjct: 946  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 1005

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
            TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 1006 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 1065

Query: 241  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
            EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 1066 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 1125

Query: 301  SEVRSFLGLAG----------------RELLLFG-------ACEDSFQNLKQKLVIAPVL 360
            SEVRSFLGLAG                 +L   G       ACEDSFQNLKQKLV APVL
Sbjct: 1126 SEVRSFLGLAGYYGRFVENFSLIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL 1185

Query: 361  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSH+QNYPTHDLELAAVVFALK
Sbjct: 1186 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHKQNYPTHDLELAAVVFALK 1245

Query: 421  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 431
            IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ
Sbjct: 1246 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 1278

[Close]

BLAST of Cmc04g0094721.1 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 810.8 bits (2093), Expect = 5.5e-231
Identity = 413/453 (91.17%), Postives = 419/453 (92.49%), Query Frame = 0


Query: 1    MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
            +PQVIS IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 872  LPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHRE 931

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKKKD
Sbjct: 932  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKD 991

Query: 121  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
            GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKDGDVPK
Sbjct: 992  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK 1051

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
            TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 1052 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 1111

Query: 241  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
            EHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 1112 EHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 1171

Query: 301  SEVRSFLGLAG----------------RELLLFG-------ACEDSFQNLKQKLVIAPVL 360
            SEVRSFLGLAG                 +L   G       ACEDSFQNLKQKLV A VL
Sbjct: 1172 SEVRSFLGLAGYYRRFVENFSRIAAPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTALVL 1231

Query: 361  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 1232 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 1291

Query: 421  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 431
            IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ
Sbjct: 1292 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 1324

[Close]

BLAST of Cmc04g0094721.1 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 810.4 bits (2092), Expect = 7.2e-231
Identity = 413/453 (91.17%), Postives = 417/453 (92.05%), Query Frame = 0


Query: 1    MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
            +PQVIS IRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 754  LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 813

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 814  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 873

Query: 121  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
            GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKD DVPK
Sbjct: 874  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 933

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
            TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 934  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 993

Query: 241  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
            EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 994  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 1053

Query: 301  SEVRSFLGLAG----------------RELLLFG-------ACEDSFQNLKQKLVIAPVL 360
            SEVRSFLGLAG                 +L   G       ACEDSFQ LKQKLV APVL
Sbjct: 1054 SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVL 1113

Query: 361  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 1114 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 1173

Query: 421  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 431
            IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ
Sbjct: 1174 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 1206

[Close]

BLAST of Cmc04g0094721.1 vs. NCBI nr
Match: KAA0037817.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 809.3 bits (2089), Expect = 1.6e-230
Identity = 406/430 (94.42%), Postives = 415/430 (96.51%), Query Frame = 0


Query: 1   MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
           +PQVIS IRASKLLSQGTWGILASVVDT+EVDVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 362 LPQVISAIRASKLLSQGTWGILASVVDTKEVDVSLSSEPVVRDYPDVFPEELPGLPPHRE 421

Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           VEFAIEL+PGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKKKD
Sbjct: 422 VEFAIELKPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSLSPWGAPVLFVKKKD 481

Query: 121 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
           GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKDGDVPK
Sbjct: 482 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK 541

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
           TAFRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 542 TAFRSRYGHYEFIVMSFCLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 601

Query: 241 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
           EHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 602 EHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 661

Query: 301 SEVRSFLGLAGRELLLFGACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCV 360
           SEVRSFLGLAG       ACEDSF+NLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCV
Sbjct: 662 SEVRSFLGLAG--YYRRKACEDSFENLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCV 721

Query: 361 LMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYF 420
           LMQQGKVVAYASRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIFT HKSLKYF
Sbjct: 722 LMQQGKVVAYASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFTIHKSLKYF 781

Query: 421 FTQKELNMRQ 431
           FTQKELNMRQ
Sbjct: 782 FTQKELNMRQ 789

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.7e-71
Identity = 140/382 (36.65%), Postives = 214/382 (56.02%), Query Frame = 0


Query: 73  PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCI 132
           PI    Y +A     E++ Q+QE+L++G IR S SP+ +P   V KK         R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 133 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPKTAFRSRY 192
           DYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  + KTAF ++ 
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 193 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL 252
           GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V 
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 253 QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTVSEVRSFL 312
             L D  L  +  KCEF  K+ +FLGH+V+ DG+  +P K++AI  +  P+   E+R+FL
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445

Query: 313 GLAGRELLLFGACED------------------------SFQNLKQKLVIAPVLTVPDGS 372
           GL G          D                        +F+ LK  ++  P+L +PD  
Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFE 505

Query: 373 GSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYL 426
             FV+ +DAS   LG VL Q G  +++ SR L  HE NY   + EL A+V+A K +RHYL
Sbjct: 506 KKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYL 565

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 5.1e-70
Identity = 142/380 (37.37%), Postives = 222/380 (58.42%), Query Frame = 0


Query: 79  YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELN 138
           Y    A  +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 139 KVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPKTAFRSRYGHYEFI 198
           ++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    V KTAF +++GHYE++
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 199 VMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDN 258
            M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L   
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392

Query: 259 KLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTVSEVRSFLGLAG-- 318
            L  +  KCEF  ++ +FLGHV++ DG+  +P KIEAI  +  P+   E+++FLGL G  
Sbjct: 393 NLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYY 452

Query: 319 RELLLFGA----------------------CEDSFQNLKQKLVIAPVLTVPDGSGSFVIY 378
           R+ +   A                       + +F+ LK  +   P+L VPD +  F + 
Sbjct: 453 RKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLT 512

Query: 379 SDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQ 430
           +DAS   LG VL Q G  ++Y SR L  HE NY T + EL A+V+A K +RHYL G   +
Sbjct: 513 TDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFE 572

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 2.4e-64
Identity = 140/384 (36.46%), Postives = 211/384 (54.95%), Query Frame = 0


Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           V+  IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+ V KKD
Sbjct: 610 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 669

Query: 121 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
           G+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL  GYHQ+ ++  D  K
Sbjct: 670 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 729

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
           TAF +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH 
Sbjct: 730 TAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHW 789

Query: 241 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
           +HL  VL+ L++  L  K  KC+F  ++  FLG+ +    ++    K  AI  +  P TV
Sbjct: 790 KHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 849

Query: 301 SEVRSFLGLAGRELLLFGAC---------------------EDSFQNLKQKLVIAPVLTV 360
            + + FLG+          C                     + + + LK  L  +PVL  
Sbjct: 850 KQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQDKAIEKLKAALCNSPVLVP 909

Query: 361 PDGSGSFVIYSDASKKGLGCVLMQQGK------VVAYASRQLKSHEQNYPTHDLELAAVV 418
            +   ++ + +DASK G+G VL +         VV Y S+ L+S ++NYP  +LEL  ++
Sbjct: 910 FNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGII 969

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 247.3 bits (630), Expect = 3.2e-64
Identity = 140/384 (36.46%), Postives = 210/384 (54.69%), Query Frame = 0


Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           V+  IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+ V KKD
Sbjct: 584 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 643

Query: 121 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
           G+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL  GYHQ+ ++  D  K
Sbjct: 644 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 703

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
           TAF +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH 
Sbjct: 704 TAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHW 763

Query: 241 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
           +HL  VL+ L++  L  K  KC+F  ++  FLG+ +    ++    K  AI  +  P TV
Sbjct: 764 KHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 823

Query: 301 SEVRSFLGLAGRELLLFGAC---------------------EDSFQNLKQKLVIAPVLTV 360
            + + FLG+          C                     + +   LK  L  +PVL  
Sbjct: 824 KQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVP 883

Query: 361 PDGSGSFVIYSDASKKGLGCVLMQQGK------VVAYASRQLKSHEQNYPTHDLELAAVV 418
            +   ++ + +DASK G+G VL +         VV Y S+ L+S ++NYP  +LEL  ++
Sbjct: 884 FNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGII 943

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.7e-62
Identity = 137/398 (34.42%), Postives = 218/398 (54.77%), Query Frame = 0


Query: 50  EELPGLHPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPW 109
           E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +  
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 110 GAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYH 169
             PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+  YH
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYH 510

Query: 170 QLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDI 229
            +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDI
Sbjct: 511 LIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDI 570

Query: 230 LIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIE 289
           LI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+
Sbjct: 571 LIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENID 630

Query: 290 AITCWTRPSTVSEVRSFLGLAG----------------RELL-------LFGACEDSFQN 349
            +  W +P    E+R FLG                     LL              + +N
Sbjct: 631 KVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIEN 690

Query: 350 LKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----VVAYASRQLKSHEQN 409
           +KQ LV  PVL   D S   ++ +DAS   +G VL Q+        V Y S ++   + N
Sbjct: 691 IKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLN 750

Query: 410 YPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSL 418
           Y   D E+ A++ +LK WRHYL    E  +I TDH++L
Sbjct: 751 YSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 812.8 bits (2098), Expect = 7.0e-232
Identity = 414/453 (91.39%), Postives = 418/453 (92.27%), Query Frame = 0


Query: 1   MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
           +PQVIS IRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 500 LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 559

Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 560 VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 619

Query: 121 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
           GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKD DVPK
Sbjct: 620 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 679

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
           TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 680 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 739

Query: 241 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
           EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 740 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 799

Query: 301 SEVRSFLGLAG----------------RELLLFG-------ACEDSFQNLKQKLVIAPVL 360
           SEVRSFLGLAG                 +L   G       ACEDSFQNLKQKLV APVL
Sbjct: 800 SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL 859

Query: 361 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
           TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 860 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 919

Query: 421 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 431
           IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ
Sbjct: 920 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 952

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy TrEMBL
Match: A0A5A7TP96 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00630 PE=4 SV=1)

HSP 1 Score: 811.2 bits (2094), Expect = 2.0e-231
Identity = 413/453 (91.17%), Postives = 418/453 (92.27%), Query Frame = 0


Query: 1    MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
            +PQVIS IRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 826  LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 885

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 886  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 945

Query: 121  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
            GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKD DVPK
Sbjct: 946  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 1005

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
            TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 1006 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 1065

Query: 241  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
            EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 1066 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 1125

Query: 301  SEVRSFLGLAG----------------RELLLFG-------ACEDSFQNLKQKLVIAPVL 360
            SEVRSFLGLAG                 +L   G       ACEDSFQNLKQKLV APVL
Sbjct: 1126 SEVRSFLGLAGYYGRFVENFSLIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL 1185

Query: 361  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSH+QNYPTHDLELAAVVFALK
Sbjct: 1186 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHKQNYPTHDLELAAVVFALK 1245

Query: 421  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 431
            IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ
Sbjct: 1246 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 1278

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 810.8 bits (2093), Expect = 2.7e-231
Identity = 413/453 (91.17%), Postives = 419/453 (92.49%), Query Frame = 0


Query: 1    MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
            +PQVIS IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 872  LPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHRE 931

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKKKD
Sbjct: 932  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKD 991

Query: 121  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
            GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKDGDVPK
Sbjct: 992  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK 1051

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
            TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 1052 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 1111

Query: 241  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
            EHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 1112 EHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 1171

Query: 301  SEVRSFLGLAG----------------RELLLFG-------ACEDSFQNLKQKLVIAPVL 360
            SEVRSFLGLAG                 +L   G       ACEDSFQNLKQKLV A VL
Sbjct: 1172 SEVRSFLGLAGYYRRFVENFSRIAAPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTALVL 1231

Query: 361  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 1232 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 1291

Query: 421  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 431
            IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ
Sbjct: 1292 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 1324

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 810.4 bits (2092), Expect = 3.5e-231
Identity = 413/453 (91.17%), Postives = 417/453 (92.05%), Query Frame = 0


Query: 1    MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
            +PQVIS IRASKLLSQGTWGILASVVDTRE DVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 754  LPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHRE 813

Query: 61   VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
            VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD
Sbjct: 814  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 873

Query: 121  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
            GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKD DVPK
Sbjct: 874  GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK 933

Query: 181  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
            TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 934  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 993

Query: 241  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
            EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 994  EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 1053

Query: 301  SEVRSFLGLAG----------------RELLLFG-------ACEDSFQNLKQKLVIAPVL 360
            SEVRSFLGLAG                 +L   G       ACEDSFQ LKQKLV APVL
Sbjct: 1054 SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVL 1113

Query: 361  TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 420
            TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK
Sbjct: 1114 TVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 1173

Query: 421  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 431
            IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ
Sbjct: 1174 IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ 1206

[Close]

BLAST of Cmc04g0094721.1 vs. ExPASy TrEMBL
Match: A0A5A7T8B6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4066G00070 PE=4 SV=1)

HSP 1 Score: 809.3 bits (2089), Expect = 7.8e-231
Identity = 406/430 (94.42%), Postives = 415/430 (96.51%), Query Frame = 0


Query: 1   MPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLHPHRE 60
           +PQVIS IRASKLLSQGTWGILASVVDT+EVDVSLSSEPVVRDYPDVFPEELPGL PHRE
Sbjct: 362 LPQVISAIRASKLLSQGTWGILASVVDTKEVDVSLSSEPVVRDYPDVFPEELPGLPPHRE 421

Query: 61  VEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 120
           VEFAIEL+PGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKKKD
Sbjct: 422 VEFAIELKPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSLSPWGAPVLFVKKKD 481

Query: 121 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLQLGYHQLRIKDGDVPK 180
           GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL+ GYHQLRIKDGDVPK
Sbjct: 482 GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK 541

Query: 181 TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 240
           TAFRSRYGHYEFIVMSF LTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE
Sbjct: 542 TAFRSRYGHYEFIVMSFCLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE 601

Query: 241 EHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAITCWTRPSTV 300
           EHLR+VLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA+T WTRPSTV
Sbjct: 602 EHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV 661

Query: 301 SEVRSFLGLAGRELLLFGACEDSFQNLKQKLVIAPVLTVPDGSGSFVIYSDASKKGLGCV 360
           SEVRSFLGLAG       ACEDSF+NLKQKLV APVLTVPDGSGSFVIYSDASKKGLGCV
Sbjct: 662 SEVRSFLGLAG--YYRRKACEDSFENLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCV 721

Query: 361 LMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYF 420
           LMQQGKVVAYASRQLKSHEQNYPTHDLELAA+VFALKIWRHYLYGEKIQIFT HKSLKYF
Sbjct: 722 LMQQGKVVAYASRQLKSHEQNYPTHDLELAAMVFALKIWRHYLYGEKIQIFTIHKSLKYF 781

Query: 421 FTQKELNMRQ 431
           FTQKELNMRQ
Sbjct: 782 FTQKELNMRQ 789

[Close]

BLAST of Cmc04g0094721.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-13
Identity = 47/130 (36.15%), Postives = 65/130 (50.00%), Query Frame = 0


Query: 242 HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKDGVSVDPAKIEAITCWTRPST 301
           HL MVLQ    ++ YA   KC F   Q+++LG  H++S +GVS DPAK+EA+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 302 VSEVRSFLGLAG----------------RELLLFGACE------DSFQNLKQKLVIAPVL 348
            +E+R FLGL G                 ELL   + +       +F+ LK  +   PVL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

The following BLAST results are available for this feature:

BLAST of Cmc04g0094721.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048687.1	1.4e-231	91.39	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043391.1	4.2e-231	91.17	pol protein [Cucumis melo var. makuwa]	[more]
KAA0031931.1	5.5e-231	91.17	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	7.2e-231	91.17	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037817.1	1.6e-230	94.42	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0094721.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.7e-71	36.65	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	5.1e-70	37.37	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q7LHG5	2.4e-64	36.46	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	3.2e-64	36.46	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.7e-62	34.42	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc04g0094721.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U330	7.0e-232	91.39	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7TP96	2.0e-231	91.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold58...	[more]
A0A5A7SQU8	2.7e-231	91.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5D3BPI1	3.5e-231	91.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7T8B6	7.8e-231	94.42	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40...	[more]

BLAST of Cmc04g0094721.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.2e-13	36.15	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 62..201 e-value: 1.0E-93 score: 314.5
None	No IPR available	GENE3D	3.10.20.370		coord: 341..411 e-value: 6.3E-9 score: 37.7
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 73..309 coord: 319..423
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 319..423
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 73..309
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 347..430 e-value: 2.38994E-41 score: 140.706
None	No IPR available	CDD	cd01647	RT_LTR	coord: 100..276 e-value: 6.09308E-97 score: 286.029
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 344..430 e-value: 7.9E-31 score: 106.5
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 116..275 e-value: 2.6E-28 score: 99.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 97..276 score: 10.556535
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 141..276 e-value: 1.0E-93 score: 314.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 40..430

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0094721	Cmc04g0094721	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0094721.1-exon	Cmc04g0094721.1-exon-CMiso1.1chr04:7673881..7674242	exon
Cmc04g0094721.1-exon	Cmc04g0094721.1-exon-CMiso1.1chr04:7674306..7675236	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0094721.1-cds	Cmc04g0094721.1-cds-CMiso1.1chr04:7673881..7674242	CDS
Cmc04g0094721.1-cds	Cmc04g0094721.1-cds-CMiso1.1chr04:7674306..7675236	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0094721.1	Cmc04g0094721.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding