Cmc04g0093211.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0093211.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol
Location	CMiso1.1chr04: 5315636 .. 5317030 (-)
Sequence length	1395
RNA-Seq Expression	Cmc04g0093211.1
Synteny	Cmc04g0093211.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTCGTAATAGAAAGGATTGGCCCAAGTGGAAAGAAGCCATCCAAGCAGAACTAAACTCACTCACGAAACGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTATGGGATTTAAATGGGTATTTGTGCGTAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTCTCTCAAAAACCAGGCATTGATTATGAGGAAACATATTCTCCTATGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAACATACTTATATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTAAATCATATAATTCAAACTTTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATTGCTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGAGATTTTTATTCATCAATCAACATATACAGAAAATATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCAAACAAAAATACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGATTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGA

mRNA sequence

ATGACAGAAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTCGTAATAGAAAGGATTGGCCCAAGTGGAAAGAAGCCATCCAAGCAGAACTAAACTCACTCACGAAACGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTATGGGATTTAAATGGGTATTTGTGCGTAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTCTCTCAAAAACCAGGCATTGATTATGAGGAAACATATTCTCCTATGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAACATACTTATATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTAAATCATATAATTCAAACTTTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATTGCTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGAGATTTTTATTCATCAATCAACATATACAGAAAATATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCAAACAAAAATACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGATTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGA

Coding sequence (CDS)

ATGACAGAAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTCGTAATAGAAAGGATTGGCCCAAGTGGAAAGAAGCCATCCAAGCAGAACTAAACTCACTCACGAAACGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTATGGGATTTAAATGGGTATTTGTGCGTAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTCTCTCAAAAACCAGGCATTGATTATGAGGAAACATATTCTCCTATGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAACATACTTATATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTAAATCATATAATTCAAACTTTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATTGCTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGAGATTTTTATTCATCAATCAACATATACAGAAAATATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCAAACAAAAATACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGATTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGTTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGA

Protein sequence

MTEKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSPMVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFRELCSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARSQTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV

Homology

[Close]

BLAST of Cmc04g0093211.1 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 759.6 bits (1960), Expect = 1.6e-215
Identity = 359/463 (77.54%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLT 61
           T ++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DWPKWKEAIQAELNSLT
Sbjct: 505 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 564

Query: 62  KREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSP 121
           KREVFGPVV TP+ VKP+G+KWVFVRKRNENNE+ RYKARLVAQGFSQ+PGIDYEETYSP
Sbjct: 565 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 624

Query: 122 MVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFREL 181
           ++DAIT R+LISLAV E LDM LMDV+T YLYGS++N+IYMKIPEGFK+P + N+  R +
Sbjct: 625 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 684

Query: 182 CSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDDL 241
            SIKLQRSLYGLKQSGRMWYN LSEYLLKEGY NNPICPC+FIKKS++GFAIIAVYVDDL
Sbjct: 685 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 744

Query: 242 NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYM 301
           N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQIEH  + + +HQSTY + +LKRFYM
Sbjct: 745 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 804

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSV
Sbjct: 805 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 864

Query: 362 NLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARS 421
           NLLARYSS+ T+ HWNG+KH+LRYLRGT DM LFYS +S   L+ YADAGYLSDPHK RS
Sbjct: 865 NLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 924

Query: 422 QTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           QTGY+F C GT ISWRSVKQTM ATSSNH+EILAIHEASREC+
Sbjct: 925 QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECI 967

[Close]

BLAST of Cmc04g0093211.1 vs. NCBI nr
Match: RVW50867.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 758.8 bits (1958), Expect = 2.7e-215
Identity = 358/463 (77.32%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLT 61
           T ++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DWPKWKEAIQAELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSP 121
           KREVFGPVV TP+ VKP+G+KWVFVRKRNENNE+ RYKARLVAQGFSQ+PGIDYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122 MVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFREL 181
           ++DAIT R+LISLAV E LDM LMDV+T YLYGS++N+IYMKIPEGFK+P + N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDDL 241
            SIKLQRSLYGLKQSGRMWYN LSEYLLKEGY NNPICPC+FIKKS++GFAIIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242 NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYM 301
           N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQIEH  + + +HQSTY + +LKRFYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDSFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARS 421
           NLLA+YSS+ T+ HWNG+KH+LRYLRGT DM LFYS +S   L+ YADAGYLSDPHK RS
Sbjct: 878 NLLAKYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422 QTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           QTGY+F C GT ISWRSVKQTM ATSSNH+EILAIHEASREC+
Sbjct: 938 QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECI 980

[Close]

BLAST of Cmc04g0093211.1 vs. NCBI nr
Match: RVW51062.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 758.4 bits (1957), Expect = 3.5e-215
Identity = 358/463 (77.32%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLT 61
           T ++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DWPKWKEAIQAELNSLT
Sbjct: 508 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 567

Query: 62  KREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSP 121
           KREVFGPVV TP+ VKP+G+KWVFVRKRNENNE+ RYKARLVAQGFSQ+PGIDYEETYSP
Sbjct: 568 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 627

Query: 122 MVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFREL 181
           ++DAIT R+LISLAV E LDM LMDV+T YLYGS++N+IYMKIPEGFK+P + N+  R +
Sbjct: 628 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 687

Query: 182 CSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDDL 241
            SIKLQRSLYGLKQSGRMWYN LSEYLLKEGY NNPICPC+FIKKS++GFAIIAVYVDDL
Sbjct: 688 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 747

Query: 242 NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYM 301
           N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQIEH  + + +HQSTY + +LKRFYM
Sbjct: 748 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 807

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYL+AIGALMYLAN TRPDIAFSV
Sbjct: 808 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLNAIGALMYLANCTRPDIAFSV 867

Query: 362 NLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARS 421
           NLLARYSS+ T+ HWNG+KH+LRYLRGT DM LFYS +S   L+ YADAGYLSDPHK RS
Sbjct: 868 NLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 927

Query: 422 QTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           QTGY+F C GT ISWRSVKQTM ATSSNH+EILAIHEASREC+
Sbjct: 928 QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECI 970

[Close]

BLAST of Cmc04g0093211.1 vs. NCBI nr
Match: RVX16158.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 755.0 bits (1948), Expect = 3.9e-214
Identity = 357/463 (77.11%), Postives = 410/463 (88.55%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLT 61
           T ++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DWPKWKEAIQAELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSP 121
           KREVFGPVV TP+ VKP+G+KWVFVRKRNENNE+ RYKARLVAQGFSQ+PGIDYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122 MVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFREL 181
           ++DAIT R+LISLAV E LDM LMDV+T YLYGS++N+IYMKIPEGFK+P + N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDDL 241
            SIKLQRSLYGLKQSGRMWYN LSEYLLK+GY NNPICPC+FIKKS++GFAIIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKKGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242 NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYM 301
           N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQIEH  + + +HQSTY + +LK FYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKCFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARS 421
           NLLARYSS+ T+ HWNG+KH+LRYLRGT DM LFYS +S   L+ YADAGYLSDPHK RS
Sbjct: 878 NLLARYSSTPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422 QTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           QTGY+F C GT ISWRSVKQTM ATSSNH+EILAIHEASREC+
Sbjct: 938 QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECI 980

[Close]

BLAST of Cmc04g0093211.1 vs. NCBI nr
Match: RVW51051.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 753.8 bits (1945), Expect = 8.6e-214
Identity = 357/463 (77.11%), Postives = 409/463 (88.34%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLT 61
           T ++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DWPKWKEAIQAELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVAFDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSP 121
           KREVFGPVV TP+ VKP+G+KWVFVRKRNENNE+ RYKARLVAQGFSQ+PG+DYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGVDYEETYSP 637

Query: 122 MVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFREL 181
           ++DAIT R+LISLAV E LDM LMDV+T YLYGS++N+IYMKIPEGFK+P + N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDDL 241
            SIKLQRSLYGLKQSGRMWYN LSEYLLKEGY NNPICPC+FIKK ++GFAIIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKLETGFAIIAVYVDDL 757

Query: 242 NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYM 301
           N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQIEH  + + +HQSTY + +LKRFYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARS 421
           NLLARYSSS T+ HWNG+KH+LRYLRGT DM LFYS +S   L+ YADAGYLSDPHK RS
Sbjct: 878 NLLARYSSSPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422 QTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           QTGY+F   GT ISWRSVKQTM ATSSNH+EILAIHEASREC+
Sbjct: 938 QTGYVFNYNGTAISWRSVKQTMVATSSNHSEILAIHEASRECI 980

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-76
Identity = 170/440 (38.64%), Postives = 257/440 (58.41%), Query Frame = 0


Query: 29   NEDYEPKSVDECRNRKDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPMGFKWVFVRK 88
            ++D EP+S+ E  +  +  +  +A+Q E+ SL K   +  +V  PKG +P+  KWVF  K
Sbjct: 806  SDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTY-KLVELPKGKRPLKCKWVFKLK 865

Query: 89   RNENNEVTRYKARLVAQGFSQKPGIDYEETYSPMVDAITLRYLISLAVCENLDMHLMDVV 148
            ++ + ++ RYKARLV +GF QK GID++E +SP+V   ++R ++SLA   +L++  +DV 
Sbjct: 866  KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVK 925

Query: 149  TTYLYGSLENEIYMKIPEGFKIPKSYNSNFRELCSIKLQRSLYGLKQSGRMWYNCLSEYL 208
            T +L+G LE EIYM+ PEGF++    +     +C  KL +SLYGLKQ+ R WY     ++
Sbjct: 926  TAFLHGDLEEEIYMEQPEGFEVAGKKHM----VC--KLNKSLYGLKQAPRQWYMKFDSFM 985

Query: 209  LKEGYQNNPICPCVFIKK-SQSGFAIIAVYVDDLNIIGTPEEL-SKAIEYLKKEFEMKDL 268
              + Y      PCV+ K+ S++ F I+ +YVDD+ I+G  + L +K    L K F+MKDL
Sbjct: 986  KSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDL 1045

Query: 269  GKTKFCLGLQI--EHLADEIFIHQSTYTENILKRFYMDKAHPLNIPMVVRSLDVKKDIFR 328
            G  +  LG++I  E  + ++++ Q  Y E +L+RF M  A P++ P+       KK    
Sbjct: 1046 GPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK--MC 1105

Query: 329  PREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSQTKIHWNGVKHVLR 388
            P    E+    +VPY SA+G+LMY    TRPDIA +V +++R+  +  K HW  VK +LR
Sbjct: 1106 PTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILR 1165

Query: 389  YLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARSQTGYLFTCGGTVISWRSVKQTMT 448
            YLRGT    L +   S+  L  Y DA    D    +S TGYLFT  G  ISW+S  Q   
Sbjct: 1166 YLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCV 1225

Query: 449  ATSSNHAEILAIHEASRECV 465
            A S+  AE +A  E  +E +
Sbjct: 1226 ALSTTEAEYIAATETGKEMI 1235

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 268.5 bits (685), Expect = 1.4e-70
Identity = 166/468 (35.47%), Postives = 253/468 (54.06%), Query Frame = 0


Query: 7    NRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLTKREVF 66
            N +N VV N      AH I ++     P S DE + R D   W+EAI  ELN+      +
Sbjct: 874  NSLNKVVLN------AHTIFND----VPNSFDEIQYRDDKSSWEEAINTELNAHKINNTW 933

Query: 67   GPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSPMVDAI 126
              +   P+    +  +WVF  K NE     RYKARLVA+GF+QK  IDYEET++P+    
Sbjct: 934  -TITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARIS 993

Query: 127  TLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFRELCSIKL 186
            + R+++SL +  NL +H MDV T +L G+L+ EIYM++P+G       + N   +C  KL
Sbjct: 994  SFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI------SCNSDNVC--KL 1053

Query: 187  QRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFI--KKSQSGFAIIAVYVDDLNI- 246
             +++YGLKQ+ R W+    + L +  + N+ +  C++I  K + +    + +YVDD+ I 
Sbjct: 1054 NKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIA 1113

Query: 247  IGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYMDK 306
             G    ++    YL ++F M DL + K  +G++IE   D+I++ QS Y + IL +F M+ 
Sbjct: 1114 TGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMEN 1173

Query: 307  AHPLNIPMVVRSLDVKKDIFRPREDNEELLGPE----VPYLSAIGALMYLANNTRPDIAF 366
             + ++ P+             P + N ELL  +     P  S IG LMY+   TRPD+  
Sbjct: 1174 CNAVSTPL-------------PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTT 1233

Query: 367  SVNLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFD--LVDYADAGYLSDPH 426
            +VN+L+RYSS      W  +K VLRYL+GTIDM L +     F+  ++ Y D+ +     
Sbjct: 1234 AVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEI 1293

Query: 427  KARSQTGYLFTC-GGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
              +S TGYLF      +I W + +Q   A SS  AE +A+ EA RE +
Sbjct: 1294 DRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREAL 1309

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-59
Identity = 136/416 (32.69%), Postives = 218/416 (52.40%), Query Frame = 0


Query: 48   KWKEAIQAELNSLTKREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGF 107
            +W++A+ +E+N+      +  V   P  V  +G +W+F +K N +  + RYKARLVA+G+
Sbjct: 950  RWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGY 1009

Query: 108  SQKPGIDYEETYSPMVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEG 167
            +Q+PG+DY ET+SP++ + ++R ++ +AV  +  +  +DV   +L G+L +E+YM  P G
Sbjct: 1010 NQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPG 1069

Query: 168  FKIPKSYNSNFRELCSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKS 227
            F + K      R     +L++++YGLKQ+ R WY  L  YLL  G+ N+     +F+ + 
Sbjct: 1070 F-VDKD-----RPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQR 1129

Query: 228  QSGFAIIAVYVDDLNIIGTPEELSK-AIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFI 287
                  + VYVDD+ I G    L K  ++ L + F +K+     + LG++ + +   + +
Sbjct: 1130 GRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHL 1189

Query: 288  HQSTYTENILKRFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGAL 347
             Q  YT ++L R  M  A P+  PM            +    +   L     Y   +G+L
Sbjct: 1190 SQRRYTLDLLARTNMLTAKPVATPMATSP--------KLTLHSGTKLPDPTEYRGIVGSL 1249

Query: 348  MYLANNTRPDIAFSVNLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVD 407
             YLA  TRPD++++VN L++Y    T  HWN +K VLRYL GT D  +F    +   L  
Sbjct: 1250 QYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHA 1309

Query: 408  YADAGYLSDPHKARSQTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRE 463
            Y+DA +  D     S  GY+   G   ISW S KQ     SS  AE  ++   S E
Sbjct: 1310 YSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSE 1350

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.7e-58
Identity = 136/416 (32.69%), Postives = 220/416 (52.88%), Query Frame = 0


Query: 48   KWKEAIQAELNSLTKREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGF 107
            +W+ A+ +E+N+      +  V   P  V  +G +W+F +K N +  + RYKARLVA+G+
Sbjct: 967  RWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGY 1026

Query: 108  SQKPGIDYEETYSPMVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEG 167
            +Q+PG+DY ET+SP++ + ++R ++ +AV  +  +  +DV   +L G+L +++YM  P G
Sbjct: 1027 NQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPG 1086

Query: 168  FKIPKSYNSNFRELCSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKS 227
            F I K      R     KL+++LYGLKQ+ R WY  L  YLL  G+ N+     +F+ + 
Sbjct: 1087 F-IDKD-----RPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQR 1146

Query: 228  QSGFAIIAVYVDDLNIIGT-PEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFI 287
                  + VYVDD+ I G  P  L   ++ L + F +KD  +  + LG++ + +   + +
Sbjct: 1147 GKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHL 1206

Query: 288  HQSTYTENILKRFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGAL 347
             Q  Y  ++L R  M  A P+  PM   +   K  ++       +L  P   Y   +G+L
Sbjct: 1207 SQRRYILDLLARTNMITAKPVTTPM---APSPKLSLY----SGTKLTDP-TEYRGIVGSL 1266

Query: 348  MYLANNTRPDIAFSVNLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVD 407
             YLA  TRPDI+++VN L+++    T+ H   +K +LRYL GT +  +F    +   L  
Sbjct: 1267 QYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHA 1326

Query: 408  YADAGYLSDPHKARSQTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRE 463
            Y+DA +  D     S  GY+   G   ISW S KQ     SS  AE  ++   S E
Sbjct: 1327 YSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSE 1367

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy Swiss-Prot
Match: Q03619 (Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-ER2 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-29
Identity = 120/441 (27.21%), Postives = 208/441 (47.17%), Query Frame = 0


Query: 44   KDWPKWKEAIQAELNSLTKREVFG-PVVYTPKGVKP---MGFKWVFVRKRNENNEVTRYK 103
            K+  K+ +A   E+N L K + +     Y  K + P   +   ++F RKR+       +K
Sbjct: 1245 KEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HK 1304

Query: 104  ARLVAQGFSQKPGIDYEETYSPMVDAITLRYL-----ISLAVCENLDMHLMDVVTTYLYG 163
            AR VA+G  Q P     +TY P + + T+ +      +SLA+  N  +  +D+ + YLY 
Sbjct: 1305 ARFVARGDIQHP-----DTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 1364

Query: 164  SLENEIYMKIPEGFKIPKSYNSNFRELCSIKLQRSLYGLKQSGRMWYNCLSEYLLKE-GY 223
             ++ E+Y++ P    +             I+L++SLYGLKQSG  WY  +  YL+K+ G 
Sbjct: 1365 DIKEELYIRPPPHLGMNDKL---------IRLKKSLYGLKQSGANWYETIKSYLIKQCGM 1424

Query: 224  QNNPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELS-KAIEYLKKEFEMKDLGKTKFC 283
            +      CVF K SQ     I ++VDD+ +       + K I  LKK+++ K +   +  
Sbjct: 1425 EEVRGWSCVF-KNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESD 1484

Query: 284  LGLQIEHLADEIFIHQSTYTENILKRFYMDKAHPLNIPMVVR----------SLDVKKDI 343
              +Q + L  EI   +  Y +  ++    +K   LN+P+  +           L + +  
Sbjct: 1485 NEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQE 1544

Query: 344  FRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSQTKIHWNGVKHV 403
                ED+ ++   E+  L  IG   Y+    R D+ + +N LA++    +K   +    +
Sbjct: 1545 LELEEDDYKMKVHEMQKL--IGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYEL 1604

Query: 404  LRYLRGTIDMSLFYSN----KSNFDLVDYADAGYLSDPHKARSQTGYLFTCGGTVISWRS 460
            ++++  T D  L +      K    LV  +DA Y + P+  +SQ G ++   G VI  +S
Sbjct: 1605 IQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQPY-YKSQIGNIYLLNGKVIGGKS 1659

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy TrEMBL
Match: A0A438FGC5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2905 PE=4 SV=1)

HSP 1 Score: 759.6 bits (1960), Expect = 7.6e-216
Identity = 359/463 (77.54%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLT 61
           T ++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DWPKWKEAIQAELNSLT
Sbjct: 505 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 564

Query: 62  KREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSP 121
           KREVFGPVV TP+ VKP+G+KWVFVRKRNENNE+ RYKARLVAQGFSQ+PGIDYEETYSP
Sbjct: 565 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 624

Query: 122 MVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFREL 181
           ++DAIT R+LISLAV E LDM LMDV+T YLYGS++N+IYMKIPEGFK+P + N+  R +
Sbjct: 625 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 684

Query: 182 CSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDDL 241
            SIKLQRSLYGLKQSGRMWYN LSEYLLKEGY NNPICPC+FIKKS++GFAIIAVYVDDL
Sbjct: 685 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 744

Query: 242 NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYM 301
           N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQIEH  + + +HQSTY + +LKRFYM
Sbjct: 745 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 804

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSV
Sbjct: 805 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 864

Query: 362 NLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARS 421
           NLLARYSS+ T+ HWNG+KH+LRYLRGT DM LFYS +S   L+ YADAGYLSDPHK RS
Sbjct: 865 NLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 924

Query: 422 QTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           QTGY+F C GT ISWRSVKQTM ATSSNH+EILAIHEASREC+
Sbjct: 925 QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECI 967

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy TrEMBL
Match: A0A438ET65 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1)

HSP 1 Score: 758.8 bits (1958), Expect = 1.3e-215
Identity = 358/463 (77.32%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLT 61
           T ++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DWPKWKEAIQAELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSP 121
           KREVFGPVV TP+ VKP+G+KWVFVRKRNENNE+ RYKARLVAQGFSQ+PGIDYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122 MVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFREL 181
           ++DAIT R+LISLAV E LDM LMDV+T YLYGS++N+IYMKIPEGFK+P + N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDDL 241
            SIKLQRSLYGLKQSGRMWYN LSEYLLKEGY NNPICPC+FIKKS++GFAIIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242 NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYM 301
           N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQIEH  + + +HQSTY + +LKRFYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TRPDIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDSFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARS 421
           NLLA+YSS+ T+ HWNG+KH+LRYLRGT DM LFYS +S   L+ YADAGYLSDPHK RS
Sbjct: 878 NLLAKYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422 QTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           QTGY+F C GT ISWRSVKQTM ATSSNH+EILAIHEASREC+
Sbjct: 938 QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECI 980

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy TrEMBL
Match: A0A438ETU3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1)

HSP 1 Score: 758.4 bits (1957), Expect = 1.7e-215
Identity = 358/463 (77.32%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWPKWKEAIQAELNSLT 61
           T ++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DWPKWKEAIQAELNSLT
Sbjct: 508 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 567

Query: 62  KREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYSP 121
           KREVFGPVV TP+ VKP+G+KWVFVRKRNENNE+ RYKARLVAQGFSQ+PGIDYEETYSP
Sbjct: 568 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 627

Query: 122 MVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFREL 181
           ++DAIT R+LISLAV E LDM LMDV+T YLYGS++N+IYMKIPEGFK+P + N+  R +
Sbjct: 628 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 687

Query: 182 CSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDDL 241
            SIKLQRSLYGLKQSGRMWYN LSEYLLKEGY NNPICPC+FIKKS++GFAIIAVYVDDL
Sbjct: 688 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 747

Query: 242 NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFYM 301
           N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQIEH  + + +HQSTY + +LKRFYM
Sbjct: 748 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 807

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYL+AIGALMYLAN TRPDIAFSV
Sbjct: 808 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLNAIGALMYLANCTRPDIAFSV 867

Query: 362 NLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKARS 421
           NLLARYSS+ T+ HWNG+KH+LRYLRGT DM LFYS +S   L+ YADAGYLSDPHK RS
Sbjct: 868 NLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 927

Query: 422 QTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           QTGY+F C GT ISWRSVKQTM ATSSNH+EILAIHEASREC+
Sbjct: 928 QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECI 970

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy TrEMBL
Match: A0A2N9G9W6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24244 PE=4 SV=1)

HSP 1 Score: 758.4 bits (1957), Expect = 1.7e-215
Identity = 365/464 (78.66%), Postives = 410/464 (88.36%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENE-DYEPKSVDECRNRKDWPKWKEAIQAELNSL 61
           T + W+R  +VVDNIF++ VA +I   N+ + EP++V++CR R DWPKWKEAIQAELNSL
Sbjct: 220 TGEIWDRNKIVVDNIFSFKVALDITRSNDHEIEPQTVEQCRRRNDWPKWKEAIQAELNSL 279

Query: 62  TKREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYS 121
            KREVFGP+V TP+GV P+G+KWVFVRKRNE NE+ RYKARLVAQGFSQ+PGIDYEETYS
Sbjct: 280 LKREVFGPIVQTPEGVMPVGYKWVFVRKRNEKNEIIRYKARLVAQGFSQRPGIDYEETYS 339

Query: 122 PMVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFRE 181
           P++DAIT R+LISL V ENLDM LMDVVT YLYGSL+N+IYMKIPEG+K+P++YNS  R 
Sbjct: 340 PVMDAITFRFLISLVVTENLDMRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRN 399

Query: 182 LCSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDD 241
           + SIKLQRSLYGLKQSGRMWYN LSEYLLKEG++NNPICPCVFIKKS+SGFAI+AVYVDD
Sbjct: 400 MYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDD 459

Query: 242 LNIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFY 301
           LN++GTPEEL+K  +YLK EFEMKDLGKTKFCLGLQIEHL D I IHQSTYTE +LK F+
Sbjct: 460 LNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFH 519

Query: 302 MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFS 361
           MDKAHPL+ PMVVRSLDVKKD FRP+E  EE LGPEVPYLSAIGALMYLAN TRPDIAFS
Sbjct: 520 MDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFS 579

Query: 362 VNLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKAR 421
           VNLLARYSS+ T  HWNGVKHVLRYLRGT DM LFY NKSN  LV YADAGYLSDPHK R
Sbjct: 580 VNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMRLFYPNKSNPQLVGYADAGYLSDPHKGR 639

Query: 422 SQTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           SQTGYLFTCG T ISWRSVKQT++ATSSNH+EI+AIHEASRECV
Sbjct: 640 SQTGYLFTCGDTAISWRSVKQTISATSSNHSEIIAIHEASRECV 683

[Close]

BLAST of Cmc04g0093211.1 vs. ExPASy TrEMBL
Match: A0A2N9HZE8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45337 PE=4 SV=1)

HSP 1 Score: 758.4 bits (1957), Expect = 1.7e-215
Identity = 365/464 (78.66%), Postives = 410/464 (88.36%), Query Frame = 0


Query: 2   TEKRWNRINVVVDNIFAYNVAHNIIHENE-DYEPKSVDECRNRKDWPKWKEAIQAELNSL 61
           T + W+R  +VVDNIF++ VA +I   N+ + EP++V++CR R DWPKWKEAIQAELNSL
Sbjct: 220 TGEIWDRNKIVVDNIFSFKVALDITRSNDHEIEPQTVEQCRRRNDWPKWKEAIQAELNSL 279

Query: 62  TKREVFGPVVYTPKGVKPMGFKWVFVRKRNENNEVTRYKARLVAQGFSQKPGIDYEETYS 121
            KREVFGP+V TP+GV P+G+KWVFVRKRNE NE+ RYKARLVAQGFSQ+PGIDYEETYS
Sbjct: 280 LKREVFGPIVQTPEGVMPVGYKWVFVRKRNEKNEIIRYKARLVAQGFSQRPGIDYEETYS 339

Query: 122 PMVDAITLRYLISLAVCENLDMHLMDVVTTYLYGSLENEIYMKIPEGFKIPKSYNSNFRE 181
           P++DAIT R+LISL V ENLDM LMDVVT YLYGSL+N+IYMKIPEG+K+P++YNS  R 
Sbjct: 340 PVMDAITFRFLISLVVTENLDMRLMDVVTAYLYGSLDNDIYMKIPEGYKMPEAYNSKSRN 399

Query: 182 LCSIKLQRSLYGLKQSGRMWYNCLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIAVYVDD 241
           + SIKLQRSLYGLKQSGRMWYN LSEYLLKEG++NNPICPCVFIKKS+SGFAI+AVYVDD
Sbjct: 400 MYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDD 459

Query: 242 LNIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTENILKRFY 301
           LN++GTPEEL+K  +YLK EFEMKDLGKTKFCLGLQIEHL D I IHQSTYTE +LK F+
Sbjct: 460 LNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFH 519

Query: 302 MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFS 361
           MDKAHPL+ PMVVRSLDVKKD FRP+E  EE LGPEVPYLSAIGALMYLAN TRPDIAFS
Sbjct: 520 MDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFS 579

Query: 362 VNLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYADAGYLSDPHKAR 421
           VNLLARYSS+ T  HWNGVKHVLRYLRGT DM LFY NKSN  LV YADAGYLSDPHK R
Sbjct: 580 VNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMRLFYPNKSNPQLVGYADAGYLSDPHKGR 639

Query: 422 SQTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAIHEASRECV 465
           SQTGYLFTCG T ISWRSVKQT++ATSSNH+EI+AIHEASRECV
Sbjct: 640 SQTGYLFTCGDTAISWRSVKQTISATSSNHSEIIAIHEASRECV 683

[Close]

BLAST of Cmc04g0093211.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 222.2 bits (565), Expect = 8.4e-58
Identity = 139/434 (32.03%), Postives = 228/434 (52.53%), Query Frame = 0


Query: 33  EPKSVDECRNRKDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPMGFKWVFVRKRNEN 92
           EP + +E    K++  W  A+  E+ ++     +  +   P   KP+G KWV+  K N +
Sbjct: 85  EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTW-EICTLPPNKKPIGCKWVYKIKYNSD 144

Query: 93  NEVTRYKARLVAQGFSQKPGIDYEETYSPMVDAITLRYLISLAVCENLDMHLMDVVTTYL 152
             + RYKARLVA+G++Q+ GID+ ET+SP+    +++ +++++   N  +H +D+   +L
Sbjct: 145 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 204

Query: 153 YGSLENEIYMKIPEGFKIPKSYNSNFRELCSIKLQRSLYGLKQSGRMWYNCLSEYLLKEG 212
            G L+ EIYMK+P G+   +  +     +C +K  +S+YGLKQ+ R W+   S  L+  G
Sbjct: 205 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFG 264

Query: 213 YQNNPICPCVFIKKSQSGFAIIAVYVDDLNIIGTPE-ELSKAIEYLKKEFEMKDLGKTKF 272
           +  +      F+K + + F  + VYVDD+ I    +  + +    LK  F+++DLG  K+
Sbjct: 265 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 324

Query: 273 CLGLQIEHLADEIFIHQSTYTENILKRFYMDKAHPLNIPM---VVRSLDVKKDIFRPRED 332
            LGL+I   A  I I Q  Y  ++L    +    P ++PM   V  S     D    +  
Sbjct: 325 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK-- 384

Query: 333 NEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSSSQTKIHWNGVKHVLRYLRG 392
                     Y   IG LMYL   TR DI+F+VN L+++S +    H   V  +L Y++G
Sbjct: 385 ---------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKG 444

Query: 393 TIDMSLFYSNKSNFDLVDYADAGYLSDPHKARSQTGYLFTCGGTVISWRSVKQTMTATSS 452
           T+   LFYS+++   L  ++DA + S     RS  GY    G ++ISW+S KQ + + SS
Sbjct: 445 TVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSS 500

Query: 453 NHAEILAIHEASRE 463
             AE  A+  A+ E
Sbjct: 505 AEAEYRALSFATDE 500

[Close]

BLAST of Cmc04g0093211.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 4.4e-22
Identity = 68/228 (29.82%), Postives = 111/228 (48.68%), Query Frame = 0


Query: 234 IAVYVDDLNIIGTPEE-LSKAIEYLKKEFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYT 293
           + +YVDD+ + G+    L+  I  L   F MKDLG   + LG+QI+     +F+ Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 294 ENILKRFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVP----YLSAIGALMY 353
           E IL    M    P++ P+             P + N  +   + P    + S +GAL Y
Sbjct: 63  EQILNNAGMLDCKPMSTPL-------------PLKLNSSVSTAKYPDPSDFRSIVGALQY 122

Query: 354 LANNTRPDIAFSVNLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVDYA 413
           L   TRPDI+++VN++ +     T   ++ +K VLRY++GTI   L+    S  ++  + 
Sbjct: 123 L-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFC 182

Query: 414 DAGYLSDPHKARSQTGYLFTCGGTVISWRSVKQTMTATSSNHAEILAI 457
           D+ +       RS TG+    G  +ISW + +Q   + SS   E  A+
Sbjct: 183 DSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRAL 216

[Close]

BLAST of Cmc04g0093211.1 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-12
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 33  EPKSVDECRNRKDWPKWKEAIQAELNSLTKREVFGPVVYTPKGVKPMGFKWVFVRKRNEN 92
           EPKSV      KD P W +A+Q EL++L++ + +  +V  P     +G KWVF  K + +
Sbjct: 27  EPKSV--IFALKD-PGWCQAMQEELDALSRNKTW-ILVPPPVNQNILGCKWVFKTKLHSD 86

Query: 93  NEVTRYKARLVAQGFSQKPGIDYEETYSPMVDAITLRYLISLA 136
             + R KARLVA+GF Q+ GI + ETYSP+V   T+R ++++A
Sbjct: 87  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc04g0093211.1 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-10
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 347 MYLANNTRPDIAFSVNLLARYSSSQTKIHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVD 406
           MYL   TRPD+ F+VN L+++SS+        V  VL Y++GT+   LFYS  S+  L  
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 407 YADAGYLSDPHKARSQTGY 426
           +AD+ + S P   RS TG+
Sbjct: 61  FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc04g0093211.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW59049.1	1.6e-215	77.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW50867.1	2.7e-215	77.32	Copia protein [Vitis vinifera]	[more]
RVW51062.1	3.5e-215	77.32	Copia protein [Vitis vinifera]	[more]
RVX16158.1	3.9e-214	77.11	Copia protein [Vitis vinifera]	[more]
RVW51051.1	8.6e-214	77.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc04g0093211.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-76	38.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-70	35.47	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.5e-59	32.69	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.7e-58	32.69	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q03619	3.6e-29	27.21	Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc04g0093211.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438FGC5	7.6e-216	77.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438ET65	1.3e-215	77.32	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1	[more]
A0A438ETU3	1.7e-215	77.32	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1	[more]
A0A2N9G9W6	1.7e-215	78.66	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9HZE8	1.7e-215	78.66	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc04g0093211.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.4e-58	32.03	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.4e-22	29.82	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	2.4e-12	41.75	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00240.1	5.0e-10	41.77	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 69..311 e-value: 1.3E-61 score: 208.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 22..392
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 407..464 e-value: 1.65422E-18 score: 79.8197
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 70..460

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0093211	Cmc04g0093211	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0093211.1-exon	Cmc04g0093211.1-exon-CMiso1.1chr04:5315636..5317030	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0093211.1-cds	Cmc04g0093211.1-cds-CMiso1.1chr04:5315636..5317030	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0093211.1	Cmc04g0093211.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding