Cmc04g0087801.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0087801.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr04: 666306 .. 668518 (-)
Sequence length	486
RNA-Seq Expression	Cmc04g0087801.1
Synteny	Cmc04g0087801.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCCCTGTCATTTTTTTCCTTCAACTCATGCACTTGATTCTTCTTCTTACTCTTCATTTTTCTTCTTTTACTCTTAAAAACAGGAGCATTCAGCAAGCAACCTCTGACCTGATCACCATCACCACACCATCCTTCATTGTTTGTATTGCTTAACGTCACACTTCTGTACCTTTTTTCTTCTGTCCGGTGAACTTAGCACACAGACCCACCGGACCACCTTTGTCATGCCATCCTCCACCAAAAAGACACAAGTCCGATTCAAACATTCGGCTGAAACTTTTTATAAACTAAAACAGATCCAAGCTAATTCGAGTCGGAGCAATTCAATTCAAAACCAAAACTCAGGTATATTCTACTTTGATTAGTTCAACAAGGCTAACAGATTCTTTTTGGTCTATGGTTCTTTTAGAACTTGACAAAACAGAACCCGTAAACACCCCTAATTTTGAGTGTCTAAGAGAGATTGTAGAGCTTGTTCCTTTTTCATTCTTAAAAGCAGCAACATGGGTAAAACTATGATAAAATAATTTACCTACTAAACAACTTACATAATATCACTCCAGTTGGCGCTAATGTACAGAAGAAAGAGTTTAATTACAGAAGAAAACCTACATTTTGAAGCTTAGACTAACGATGGGAAATCAAAACCCAAAAACAACTACTTAAACCAACGTCAATTCAGTTTGAAACCGGTTTTGGTTGACAGTTCCAATTTCCATACAAGGAAAACCAATTATATTCAGTCAGATCTGGATTTGGCAGACCAAACATACTTCACGCTGACAGAGAGCATTAATACTAAAATGGCTTTGAAGTTGGCTTCTAACCTTAAGGTCTCATTCGTTGGAGAAGCTGCACGAGCACATCTTATTGAGATATTAACCTTCATCTCTGGTTCATCATGTATTTAGATCATGCTACAGGTCCACTCACCACCGACTAGTACGTGTGCCTATGTTGAATCAAATAACAAATCACATCACTAAAACATCAATAATTGAATTTGAGGGGGTTCGGTTATAGTATGTCATCTAGCAATTTGGTTTGGTTCTCTTATCAGATCAGTTCCACTAAAGGACTACTCAACATATCAGCAAAGATAAAACTCTTTTTGCTTTCTGCGTTCCCAAAAAGACCCTTGAATAAAGTACTTTCATTTCAAACATACACAAAGTTTATACAAAGTCCGGACAAGAGCCTCTCTACTTTGTACAAGGTCTTGAGAAAATCCTTTCATGAAAGTTATAGCAGCAGCTACCAACTTGAGCTATATTCCCAAAACTATGCAATTTATCATAAATGAATACCTTTAATTCAGAAAGACAGCCCCCCAACAAGTGCGCGTCTGTAGGGATGTTAGTTTTACCATTGTTCATAGCCAATTCTATTCACCAGTTGCTTGGGGATGAACTCTGTTAAACAAACGATATATCGTGGTCGATCTGGACATCTGGGGTTCCCTTTGCAGCACAGCAATGACATCTTTAACAGAAATGCTACGAGCCACCTTAGTTTGAGTTGCATTAGTTTGATTCCTTCCAAATTTCCTGGAAGTTCCTGTGCAAAAACATGATAGATGGGGTTAAAATCATGCTTATTTTCATTTACTTTTCTTTCGTTTTAATCATTTTTTTATATCAATTGAGAGTATTCATGCTAGCTTTCATGCATCTCGACTAATCTCACGGGACAATCCACCTAACCCTACAACATTTGAATTTCCTTTTCCATCTCTCTAATTTGATGAATGTGATCTAACAGAAAAATAAGTGGACCATAATCTCAAACAAGTTATGACTAAGCTATTGATGCTGATGAGATTTCCGATTGCATTTCACTGGAAACAAACTTGCAATAGCTTGGGTTCCTTGTCAGTTTATGATTTCCACATGATAAATGTGCTCTTTTTTCTTTTCATCCTCCTGTGTTTCTTTTATTTATTACTATCATTTTATGATGTCCAAAGCATGTTCGAGAAAATGGCAATATTGTCAAGTTTAATTTTGACAAACATCCGCTGTCATATTAGACATGCCAAATGGAGTATTGCTACCTTTTCTTTCACCTTCTAGGTTGTCCTTCCCGTGTCTTCCTGCTGCTGAAGAAGACTTACGGACAGCATCTTTCCCTGCCTGAGAACTAGAAGCTGAATCCATTCCACCTTCACGTTTCTGTCGCGCCTGCTCAGCCATAAGCTGCCATTTTGATAGC

mRNA sequence

CCACCCCTGTCATTTTTTTCCTTCAACTCATGCACTTGATTCTTCTTCTTACTCTTCATTTTTCTTCTTTTACTCTTAAAAACAGGAGCATTCAGCAAGCAACCTCTGACCTGATCACCATCACCACACCATCCTTCATTGTTTGTATTGCTTAACGTCACACTTCTGTACCTTTTTTCTTCTGTCCGGTGAACTTAGCACACAGACCCACCGGACCACCTTTGTCATGCCATCCTCCACCAAAAAGACACAAGTCCGATTCAAACATTCGGCTGAAACTTTTTATAAACTAAAACAGATCCAAGCTAATTCGAGTCGGAGCAATTCAATTCAAAACCAAAACTCAGGTTGTCCTTCCCGTGTCTTCCTGCTGCTGAAGAAGACTTACGGACAGCATCTTTCCCTGCCTGAGAACTAGAAGCTGAATCCATTCCACCTTCACGTTTCTGTCGCGCCTGCTCAGCCATAAGCTGCCATTTTGATAGC

Coding sequence (CDS)

ATGCCATCCTCCACCAAAAAGACACAAGTCCGATTCAAACATTCGGCTGAAACTTTTTATAAACTAAAACAGATCCAAGCTAATTCGAGTCGGAGCAATTCAATTCAAAACCAAAACTCAGGTTGTCCTTCCCGTGTCTTCCTGCTGCTGAAGAAGACTTACGGACAGCATCTTTCCCTGCCTGAGAACTAG

Protein sequence

MPSSTKKTQVRFKHSAETFYKLKQIQANSSRSNSIQNQNSGCPSRVFLLLKKTYGQHLSLPEN

Homology

The following BLAST results are available for this feature:

BLAST of Cmc04g0087801.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc04g0087801.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc04g0087801.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc04g0087801.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0087801	Cmc04g0087801	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0087801.1-exon	Cmc04g0087801.1-exon-CMiso1.1chr04:666306..666444	exon
Cmc04g0087801.1-exon	Cmc04g0087801.1-exon-CMiso1.1chr04:668172..668518	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0087801.1-three_prime_utr	Cmc04g0087801.1-three_prime_utr-CMiso1.1chr04:666306..666373	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0087801.1-cds	Cmc04g0087801.1-cds-CMiso1.1chr04:666374..666444	CDS
Cmc04g0087801.1-cds	Cmc04g0087801.1-cds-CMiso1.1chr04:668172..668292	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0087801.1-five_prime_utr	Cmc04g0087801.1-five_prime_utr-CMiso1.1chr04:668293..668518	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0087801.1	Cmc04g0087801.1-protein	polypeptide