Cmc04g0087491.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0087491.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	CMiso1.1chr04: 482959 .. 483369 (+)
Sequence length	411
RNA-Seq Expression	Cmc04g0087491.1
Synteny	Cmc04g0087491.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGTTTTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGAGAAATATTACTTTTTTTAGGCCAAGAGGTTGATAGTGAGATTTTGAATCAACTCATTGGTCTTATAGTATATCTCAGTATGGAGGATGATACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGGCGGAGTAGGTATTTATGATACTATGCAATTTGTGCAACCTCATGTACAGACAATATGCATGGAATTAGCCGCTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAATGTCTAGCATTCCCGCAAGCTTGTTTTTTTCAAAAACAAAATGAGACAACAAATAAATGTTACTATAGTTCATTTGTACTAAACATGCAAAAATAG

mRNA sequence

ATGGATTGTTTTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGAGAAATATTACTTTTTTTAGGCCAAGAGGTTGATAGTGAGATTTTGAATCAACTCATTGGTCTTATAGTATATCTCAGTATGGAGGATGATACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGGCGGAGTAGGTATTTATGATACTATGCAATTTGTGCAACCTCATGTACAGACAATATGCATGGAATTAGCCGCTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAATGTCTAGCATTCCCGCAAGCTTGTTTTTTTCAAAAACAAAATGAGACAACAAATAAATGTTACTATAGTTCATTTGTACTAAACATGCAAAAATAG

Coding sequence (CDS)

ATGGATTGTTTTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGAGAAATATTACTTTTTTTAGGCCAAGAGGTTGATAGTGAGATTTTGAATCAACTCATTGGTCTTATAGTATATCTCAGTATGGAGGATGATACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGGCGGAGTAGGTATTTATGATACTATGCAATTTGTGCAACCTCATGTACAGACAATATGCATGGAATTAGCCGCTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAATGTCTAGCATTCCCGCAAGCTTGTTTTTTTCAAAAACAAAATGAGACAACAAATAAATGTTACTATAGTTCATTTGTACTAAACATGCAAAAATAG

Protein sequence

MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQACFFQKQNETTNKCYYSSFVLNMQK

Homology

[Close]

BLAST of Cmc04g0087491.1 vs. NCBI nr
Match: YP_009176028.1 (clp protease proteolytic subunit [Ficus racemosa] >ALI30724.1 clp protease proteolytic subunit [Ficus racemosa])

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-43
Identity = 96/111 (86.49%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 2   DCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSP 61
           D  TV KGYNFI INRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSP
Sbjct: 77  DACTVPKGYNFISINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSP 136

Query: 62  GGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           GG VI G+GIYDTMQFVQP VQTICM LAASMGSFILVGGEITK LAFP A
Sbjct: 137 GGWVIPGLGIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHA 187

[Close]

BLAST of Cmc04g0087491.1 vs. NCBI nr
Match: QEZ90582.1 (ClpP [Archidasyphyllum excelsum])

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-42
Identity = 93/112 (83.04%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINS 60
           +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINS
Sbjct: 21  VDICTVSKGYNLTLINRLYRERLLFLGQEVDSEISNQLIGLMVYLSMEDDTKDLYLFINS 80

Query: 61  PGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           PGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVGGEITK LAFP A
Sbjct: 81  PGGGVLSGMGIYDTMQFVQPDVHTICMGLAASMGSLLLVGGEITKRLAFPHA 132

[Close]

BLAST of Cmc04g0087491.1 vs. NCBI nr
Match: YP_009912275.1 (ClpP [Fulcaldea stuessyi] >QLD96795.1 ClpP [Fulcaldea stuessyi])

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-42
Identity = 93/112 (83.04%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINS 60
           +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINS
Sbjct: 21  VDICTVSKGYNLTLINRLYRERLLFLGQEVDSEISNQLIGLMVYLSMEDDTKDLYLFINS 80

Query: 61  PGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           PGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVGGEITK LAFP A
Sbjct: 81  PGGGVLSGMGIYDTMQFVQPDVHTICMGLAASMGSLLLVGGEITKRLAFPHA 132

[Close]

BLAST of Cmc04g0087491.1 vs. NCBI nr
Match: RXV70727.1 (ATP-dependent Clp protease proteolytic subunit [bacterium 1XD8-92])

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-42
Identity = 97/114 (85.09%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 5   TVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGG 64
           TVLK YNFILINRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSPGG 
Sbjct: 13  TVLKVYNFILINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGW 72

Query: 65  VIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA---CFF 116
           VI GV IYDTMQFV+P VQTICM L ASMGSFILVGGEITK LAFP A   CFF
Sbjct: 73  VIPGVAIYDTMQFVRPDVQTICMGLGASMGSFILVGGEITKRLAFPHAWRHCFF 126

[Close]

BLAST of Cmc04g0087491.1 vs. NCBI nr
Match: QKY75378.1 (ClpP [Barnadesia lehmannii])

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-42
Identity = 93/112 (83.04%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINS 60
           +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINS
Sbjct: 21  VDICTVPKGYNLTLINRLYRERLLFLGQEVDSEISNQLIGLMVYLSMEDDTKDLYLFINS 80

Query: 61  PGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           PGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVGGEITK LAFP+A
Sbjct: 81  PGGGVLSGMGIYDTMQFVQPDVHTICMGLAASMGSLLLVGGEITKRLAFPRA 132

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy Swiss-Prot
Match: Q09WZ2 (ATP-dependent Clp protease proteolytic subunit OS=Morus indica OX=248361 GN=clpP PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 14  LINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYD 73
           +INRLYRE LLFLGQEVDSEI NQLIGL+V+LS+EDDTKDLYLFINSPGG VI G+GIYD
Sbjct: 23  VINRLYRERLLFLGQEVDSEISNQLIGLMVFLSIEDDTKDLYLFINSPGGWVIPGLGIYD 82

Query: 74  TMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           TMQFVQP VQTICM LAASMGSFILVGGEITK LAFP A
Sbjct: 83  TMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHA 121

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy Swiss-Prot
Match: Q9M3K5 (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea OX=3562 GN=clpP PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-39
Identity = 84/97 (86.60%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 16  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTM 75
           NRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSPGG VI GV IYDTM
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 76  QFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           QFV+P V TICM LAASMGSFILVGGEITK LAFP A
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy Swiss-Prot
Match: Q0G9T7 (ATP-dependent Clp protease proteolytic subunit OS=Daucus carota OX=4039 GN=clpP PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.3e-39
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 16  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTM 75
           NRLYRE LLFLGQEVDSEI NQLIGL+VYLS+E+DTKDLYLFINSPGG VI GV IYDTM
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 76  QFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           QFV+P VQTICM LAASMGSFIL GGEITK LAFP A
Sbjct: 85  QFVRPDVQTICMGLAASMGSFILAGGEITKRLAFPHA 121

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy Swiss-Prot
Match: Q3C1K4 (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris OX=4096 GN=clpP PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.3e-39
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 16  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTM 75
           NRLYRE LLFLGQEVDSEI NQLIGL+VYLS+ED+TKDLYLFINSPGG VI GV IYDTM
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 76  QFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           QFV+P V TICM LAASMGSFILVGGEITK LAFP A
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy Swiss-Prot
Match: Q33C07 (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis OX=4098 GN=clpP PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.3e-39
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 16  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTM 75
           NRLYRE LLFLGQEVDSEI NQLIGL+VYLS+ED+TKDLYLFINSPGG VI GV IYDTM
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 76  QFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           QFV+P V TICM LAASMGSFILVGGEITK LAFP A
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy TrEMBL
Match: A0A0N9XTU2 (ATP-dependent Clp protease proteolytic subunit OS=Ficus racemosa OX=100569 GN=clpP PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.3e-43
Identity = 96/111 (86.49%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 2   DCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSP 61
           D  TV KGYNFI INRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSP
Sbjct: 77  DACTVPKGYNFISINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSP 136

Query: 62  GGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           GG VI G+GIYDTMQFVQP VQTICM LAASMGSFILVGGEITK LAFP A
Sbjct: 137 GGWVIPGLGIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHA 187

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy TrEMBL
Match: A0A7D5FAA0 (ATP-dependent Clp protease proteolytic subunit OS=Fulcaldea stuessyi OX=1080004 GN=clpP PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 93/112 (83.04%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINS 60
           +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINS
Sbjct: 21  VDICTVSKGYNLTLINRLYRERLLFLGQEVDSEISNQLIGLMVYLSMEDDTKDLYLFINS 80

Query: 61  PGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           PGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVGGEITK LAFP A
Sbjct: 81  PGGGVLSGMGIYDTMQFVQPDVHTICMGLAASMGSLLLVGGEITKRLAFPHA 132

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy TrEMBL
Match: A0A5J6RKS0 (ATP-dependent Clp protease proteolytic subunit OS=Archidasyphyllum excelsum OX=171774 GN=clpP PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 93/112 (83.04%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINS 60
           +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINS
Sbjct: 21  VDICTVSKGYNLTLINRLYRERLLFLGQEVDSEISNQLIGLMVYLSMEDDTKDLYLFINS 80

Query: 61  PGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           PGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVGGEITK LAFP A
Sbjct: 81  PGGGVLSGMGIYDTMQFVQPDVHTICMGLAASMGSLLLVGGEITKRLAFPHA 132

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy TrEMBL
Match: A0A4Q2AMQ5 (ATP-dependent Clp protease proteolytic subunit OS=bacterium 1XD8-92 OX=2320884 GN=D6D47_47570 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 97/114 (85.09%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 5   TVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGG 64
           TVLK YNFILINRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSPGG 
Sbjct: 13  TVLKVYNFILINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGW 72

Query: 65  VIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA---CFF 116
           VI GV IYDTMQFV+P VQTICM L ASMGSFILVGGEITK LAFP A   CFF
Sbjct: 73  VIPGVAIYDTMQFVRPDVQTICMGLGASMGSFILVGGEITKRLAFPHAWRHCFF 126

[Close]

BLAST of Cmc04g0087491.1 vs. ExPASy TrEMBL
Match: A0A249RXJ0 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo subsp. agrestis OX=217619 GN=clpP PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.6e-42
Identity = 91/102 (89.22%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 11  NFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVG 70
           +++ +NRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINSPGGGVIGGVG
Sbjct: 19  SWVDLNRLYRERLLFLGQEVDSEISNQLIGLMVYLSMEDDTKDLYLFINSPGGGVIGGVG 78

Query: 71  IYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           IYDTMQFVQPHVQTICM LAASMGSFILVGGEITK LAFP A
Sbjct: 79  IYDTMQFVQPHVQTICMGLAASMGSFILVGGEITKRLAFPHA 120

[Close]

BLAST of Cmc04g0087491.1 vs. TAIR 10
Match: ATCG00670.1 (plastid-encoded CLP P )

HSP 1 Score: 149.1 bits (375), Expect = 2.7e-36
Identity = 75/99 (75.76%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 14  LINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYD 73
           + NRLYRE L FLGQEVD+EI NQLI L++YLS+E DTKDLYLFINSPGG VI G+ IYD
Sbjct: 23  IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYD 82

Query: 74  TMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           TMQFV+P VQTICM LAAS+ SFILVGG ITK +AFP A
Sbjct: 83  TMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121

[Close]

BLAST of Cmc04g0087491.1 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 )

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17
Identity = 38/99 (38.38%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 14  LINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYD 73
           +I++L++  ++  G  VD ++ N ++  ++YL   D TKD+ +++NSPGG V  G+ I+D
Sbjct: 115 IISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFD 174

Query: 74  TMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           TM+ ++P V T+C+ LAASMG+F+L  G   K  + P +
Sbjct: 175 TMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNS 213

[Close]

BLAST of Cmc04g0087491.1 vs. TAIR 10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3 )

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 16  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTM 75
           N L R+ ++FLG +VD    + +I  ++ L  ED  +D+ LFINSPGG +  G+GIYD M
Sbjct: 88  NMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAM 147

Query: 76  QFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA 113
           +  +  V T+C+ LAASMG+F+L  G   K    P +
Sbjct: 148 KQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNS 184

[Close]

BLAST of Cmc04g0087491.1 vs. TAIR 10
Match: AT1G12410.1 (CLP protease proteolytic subunit 2 )

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-16
Identity = 37/95 (38.95%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 16  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTM 75
           N LYRE ++F+GQ +D E  NQ++  ++YL   DD++ +Y+++N PGG +   + IYDTM
Sbjct: 92  NALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTM 151

Query: 76  QFVQPHVQTICMELAASMGSFILVGGEITKCLAFP 111
           + ++  V T C+ LA ++  F+L  GE     A P
Sbjct: 152 KSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMP 186

[Close]

BLAST of Cmc04g0087491.1 vs. TAIR 10
Match: AT1G11750.1 (CLP protease proteolytic subunit 6 )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 34/104 (32.69%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 18  LYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQF 77
           L+R  ++F+GQ +++++  ++I  +V L+  DD  D+ +++N PGG     + IYD M +
Sbjct: 101 LFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSW 160

Query: 78  VQPHVQTICMELAASMGSFILVGGEITKCLAFPQACFFQKQNET 122
           ++P V T+   +AAS G+ +L GGE     A P       Q +T
Sbjct: 161 IKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQT 204

The following BLAST results are available for this feature:

BLAST of Cmc04g0087491.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009176028.1	4.7e-43	86.49	clp protease proteolytic subunit [Ficus racemosa] >ALI30724.1 clp protease prote...	[more]
QEZ90582.1	2.3e-42	83.04	ClpP [Archidasyphyllum excelsum]	[more]
YP_009912275.1	2.3e-42	83.04	ClpP [Fulcaldea stuessyi] >QLD96795.1 ClpP [Fulcaldea stuessyi]	[more]
RXV70727.1	2.3e-42	85.09	ATP-dependent Clp protease proteolytic subunit [bacterium 1XD8-92]	[more]
QKY75378.1	2.3e-42	83.04	ClpP [Barnadesia lehmannii]	[more]

BLAST of Cmc04g0087491.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WZ2	1.3e-40	86.87	ATP-dependent Clp protease proteolytic subunit OS=Morus indica OX=248361 GN=clpP...	[more]
Q9M3K5	2.5e-39	86.60	ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea OX=3562 GN=c...	[more]
Q0G9T7	7.3e-39	85.57	ATP-dependent Clp protease proteolytic subunit OS=Daucus carota OX=4039 GN=clpP ...	[more]
Q3C1K4	7.3e-39	85.57	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris OX=4096 G...	[more]
Q33C07	7.3e-39	85.57	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis OX=4...	[more]

BLAST of Cmc04g0087491.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0N9XTU2	2.3e-43	86.49	ATP-dependent Clp protease proteolytic subunit OS=Ficus racemosa OX=100569 GN=cl...	[more]
A0A7D5FAA0	1.1e-42	83.04	ATP-dependent Clp protease proteolytic subunit OS=Fulcaldea stuessyi OX=1080004 ...	[more]
A0A5J6RKS0	1.1e-42	83.04	ATP-dependent Clp protease proteolytic subunit OS=Archidasyphyllum excelsum OX=1...	[more]
A0A4Q2AMQ5	1.1e-42	85.09	ATP-dependent Clp protease proteolytic subunit OS=bacterium 1XD8-92 OX=2320884 G...	[more]
A0A249RXJ0	5.6e-42	89.22	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo subsp. agrestis O...	[more]

BLAST of Cmc04g0087491.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00670.1	2.7e-36	75.76	plastid-encoded CLP P	[more]
AT1G02560.1	2.8e-17	38.38	nuclear encoded CLP protease 5	[more]
AT1G66670.1	2.8e-17	42.27	CLP protease proteolytic subunit 3	[more]
AT1G12410.1	3.0e-16	38.95	CLP protease proteolytic subunit 2	[more]
AT1G11750.1	1.4e-13	32.69	CLP protease proteolytic subunit 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 53..73 score: 54.76 coord: 13..28 score: 40.47 coord: 84..101 score: 60.83
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 14..114 e-value: 3.06501E-36 score: 120.239
None	No IPR available	GENE3D	3.90.226.10		coord: 8..130 e-value: 7.1E-30 score: 106.0
None	No IPR available	PANTHER	PTHR10381:SF15	CHLOROPLASTIC ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1	coord: 14..114
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 14..118 e-value: 8.0E-31 score: 107.3
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 14..114
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 13..118

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0087491	Cmc04g0087491	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0087491.1-exon	Cmc04g0087491.1-exon-CMiso1.1chr04:482959..483369	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0087491.1-cds	Cmc04g0087491.1-cds-CMiso1.1chr04:482959..483369	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0087491.1	Cmc04g0087491.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity