Cmc03g0074801.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc03g0074801.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr03: 22244354 .. 22244899 (-)
Sequence length	546
RNA-Seq Expression	Cmc03g0074801.1
Synteny	Cmc03g0074801.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACGAGGTTAGACTTTGATACAGCTTTCCACCCACAGGCTGATGGTCAGACTGAGCATTTGAACCAAGTTTTAGAGGATATGTTGCAAGCTTGTGCATTAGAATTCCCAGATAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAACAACAGTTTTCAGGCTACCATTGGCATGACACCGTTTGAGGCCTTGTATGACAAATGTTGTGGATTCCCTGTTTGCTGGGATGAGATTGATGAGCAGAGATTGATGTGTTCTAAGTTAGTTCAATCTACTAATGAAGCGATACAGAAAATTAGATCCCTTATGCAGACCGCACATAGTAGACAAAAGAGTTATGCTAATGTGAGACGAAAGGACTTTGAGTTTAATGTGGGGGATAAAGTGTTCTTGAAAGTTGCACCTATGAAAGGTATCCAACGATTTGAAAGGAGAGGAAATCTGAGTCCCTGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATTGCCCCTATGGCATATCCCTTGGCCGCCATCACTCTCGGTAGTTCATGA

mRNA sequence

ATGGGCACGAGGTTAGACTTTGATACAGCTTTCCACCCACAGGCTGATGGTCAGACTGAGCATTTGAACCAAGTTTTAGAGGATATGTTGCAAGCTTGTGCATTAGAATTCCCAGATAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAACAACAGTTTTCAGGCTACCATTGGCATGACACCGTTTGAGGCCTTGTATGACAAATGTTGTGGATTCCCTGTTTGCTGGGATGAGATTGATGAGCAGAGATTGATGTGTTCTAAGTTAGTTCAATCTACTAATGAAGCGATACAGAAAATTAGATCCCTTATGCAGACCGCACATAGTAGACAAAAGAGTTATGCTAATGTGAGACGAAAGGACTTTGAGTTTAATGTGGGGGATAAAGTGTTCTTGAAAGTTGCACCTATGAAAGGTATCCAACGATTTGAAAGGAGAGGAAATCTGAGTCCCTGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATTGCCCCTATGGCATATCCCTTGGCCGCCATCACTCTCGGTAGTTCATGA

Coding sequence (CDS)

ATGGGCACGAGGTTAGACTTTGATACAGCTTTCCACCCACAGGCTGATGGTCAGACTGAGCATTTGAACCAAGTTTTAGAGGATATGTTGCAAGCTTGTGCATTAGAATTCCCAGATAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAACAACAGTTTTCAGGCTACCATTGGCATGACACCGTTTGAGGCCTTGTATGACAAATGTTGTGGATTCCCTGTTTGCTGGGATGAGATTGATGAGCAGAGATTGATGTGTTCTAAGTTAGTTCAATCTACTAATGAAGCGATACAGAAAATTAGATCCCTTATGCAGACCGCACATAGTAGACAAAAGAGTTATGCTAATGTGAGACGAAAGGACTTTGAGTTTAATGTGGGGGATAAAGTGTTCTTGAAAGTTGCACCTATGAAAGGTATCCAACGATTTGAAAGGAGAGGAAATCTGAGTCCCTGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATTGCCCCTATGGCATATCCCTTGGCCGCCATCACTCTCGGTAGTTCATGA

Protein sequence

MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS

Homology

[Close]

BLAST of Cmc03g0074801.1 vs. NCBI nr
Match: KAA0057119.1 (pol protein [Cucumis melo var. makuwa] >TYJ97103.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.8 bits (865), Expect = 5.7e-89
Identity = 163/175 (93.14%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 7   FDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFE 66
           FDT FHPQADGQTEHLNQVLEDML+ACALE P SWDSHLHLMEFAYNNSFQATIGMTPFE
Sbjct: 542 FDTTFHPQADGQTEHLNQVLEDMLRACALELPGSWDSHLHLMEFAYNNSFQATIGMTPFE 601

Query: 67  ALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANVRRKDFE 126
           ALYDKCCG PVCWDE+ EQRLM  KLVQSTNEAIQKIRSLMQ AHSRQKSYANVRRK+FE
Sbjct: 602 ALYDKCCGSPVCWDEVGEQRLMGPKLVQSTNEAIQKIRSLMQIAHSRQKSYANVRRKNFE 661

Query: 127 FNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS 182
           FNVGDKVFLKVAPMKGI RFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS
Sbjct: 662 FNVGDKVFLKVAPMKGILRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS 716

[Close]

BLAST of Cmc03g0074801.1 vs. NCBI nr
Match: KAA0043669.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-78
Identity = 145/174 (83.33%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 1   MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFPDSWDSHLHLMEFAYNNS+QATI
Sbjct: 285 MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPDSWDSHLHLMEFAYNNSYQATI 344

Query: 61  GMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANV 120
           GM PFEALY +CC  PVCWDE+ EQRLM  +LVQSTNEA+QKIRS M TA SRQKSYA+V
Sbjct: 345 GMAPFEALYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAVQKIRSRMHTAQSRQKSYADV 404

Query: 121 RRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA 175
           RRKD EF VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILERI P+AY LA
Sbjct: 405 RRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLA 458

[Close]

BLAST of Cmc03g0074801.1 vs. NCBI nr
Match: KAA0041424.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 1.0e-77
Identity = 144/174 (82.76%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 1   MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNS+QATI
Sbjct: 80  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 139

Query: 61  GMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANV 120
           GM PFEALY KCC  PVCWDE+ EQRLM  +LVQSTNEA+QKIRS M TA SRQKSYA+V
Sbjct: 140 GMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAVQKIRSRMHTAQSRQKSYADV 199

Query: 121 RRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA 175
           RRKD EF VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILER+ P+AY LA
Sbjct: 200 RRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERVGPVAYRLA 253

[Close]

BLAST of Cmc03g0074801.1 vs. NCBI nr
Match: KAA0063786.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-77
Identity = 144/174 (82.76%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 1   MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDF TAF+PQ D QTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNS+QATI
Sbjct: 80  MGTRLDFSTAFYPQTDDQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 139

Query: 61  GMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANV 120
           GM PFEALY KCC FPVCW E+ EQRLMC +LVQSTNEAIQKIRS M TA SRQKSYA+V
Sbjct: 140 GMAPFEALYGKCCRFPVCWGEVGEQRLMCPELVQSTNEAIQKIRSRMHTAQSRQKSYADV 199

Query: 121 RRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA 175
           RRKD EF VGDKVFLKVAPM+G+ RFERRG LSP FVGPFEILERI P+AY LA
Sbjct: 200 RRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLA 253

[Close]

BLAST of Cmc03g0074801.1 vs. NCBI nr
Match: KAA0045277.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77
Identity = 146/174 (83.91%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 1   MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNSFQATI
Sbjct: 662 MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATI 721

Query: 61  GMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANV 120
           GM PFEALY KCC  PVCW E+ EQRLM  +LVQSTNEAIQKIRS MQTA SRQKSYA+V
Sbjct: 722 GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV 781

Query: 121 RRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA 175
           R+KD EF+VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILERI P+AY LA
Sbjct: 782 RQKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIDPVAYRLA 835

[Close]

BLAST of Cmc03g0074801.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-16
Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 0


Query: 5    LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTP 64
            + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYAN 124
            FE ++           P   D+ DE         Q T +  Q ++  + T + + K Y +
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDENS-------QETIQVFQTVKEHLNTNNIKMKKYFD 1190

Query: 125  VRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL 174
            ++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Sbjct: 1191 MKIQEIEEFQPGDLVMVKRTKTGFLHKSNK---LAPSFAGPFYVLQKSGPNNYEL 1235

[Close]

BLAST of Cmc03g0074801.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-16
Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 0


Query: 5    LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTP 64
            + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYAN 124
            FE ++           P   D+ DE         Q T +  Q ++  + T + + K Y +
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDENS-------QETIQVFQTVKEHLNTNNIKMKKYFD 1190

Query: 125  VRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL 174
            ++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Sbjct: 1191 MKIQEIEEFQPGDLVMVKRTKTGFLHKSNK---LAPSFAGPFYVLQKSGPNNYEL 1235

[Close]

BLAST of Cmc03g0074801.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-16
Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 0


Query: 5    LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTP 64
            + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYAN 124
            FE ++           P   D+ DE         Q T +  Q ++  + T + + K Y +
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDENS-------QETIQVFQTVKEHLNTNNIKMKKYFD 1190

Query: 125  VRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL 174
            ++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Sbjct: 1191 MKIQEIEEFQPGDLVMVKRTKTGFLHKSNK---LAPSFAGPFYVLQKSGPNNYEL 1235

[Close]

BLAST of Cmc03g0074801.1 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-16
Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 0


Query: 5    LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTP 64
            + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYAN 124
            FE ++           P   D+ DE         Q T +  Q ++  + T + + K Y +
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDENS-------QETIQVFQTVKEHLNTNNIKMKKYFD 1190

Query: 125  VRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL 174
            ++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Sbjct: 1191 MKIQEIEEFQPGDLVMVKRTKTGFLHKSNK---LAPSFAGPFYVLQKSGPNNYEL 1235

[Close]

BLAST of Cmc03g0074801.1 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-16
Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 0


Query: 5    LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTP 64
            + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTP
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYAN 124
            FE ++           P   D+ DE         Q T +  Q ++  + T + + K Y +
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKTDENS-------QETIQVFQTVKEHLNTNNIKMKKYFD 1190

Query: 125  VRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL 174
            ++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Sbjct: 1191 MKIQEIEEFQPGDLVMVKRTKTGFLHKSNK---LAPSFAGPFYVLQKSGPNNYEL 1235

[Close]

BLAST of Cmc03g0074801.1 vs. ExPASy TrEMBL
Match: A0A5A7UUA0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00080 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.8e-89
Identity = 163/175 (93.14%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 7   FDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFE 66
           FDT FHPQADGQTEHLNQVLEDML+ACALE P SWDSHLHLMEFAYNNSFQATIGMTPFE
Sbjct: 542 FDTTFHPQADGQTEHLNQVLEDMLRACALELPGSWDSHLHLMEFAYNNSFQATIGMTPFE 601

Query: 67  ALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANVRRKDFE 126
           ALYDKCCG PVCWDE+ EQRLM  KLVQSTNEAIQKIRSLMQ AHSRQKSYANVRRK+FE
Sbjct: 602 ALYDKCCGSPVCWDEVGEQRLMGPKLVQSTNEAIQKIRSLMQIAHSRQKSYANVRRKNFE 661

Query: 127 FNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS 182
           FNVGDKVFLKVAPMKGI RFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS
Sbjct: 662 FNVGDKVFLKVAPMKGILRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS 716

[Close]

BLAST of Cmc03g0074801.1 vs. ExPASy TrEMBL
Match: A0A5A7TR61 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19461G00010 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 145/174 (83.33%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 1   MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFPDSWDSHLHLMEFAYNNS+QATI
Sbjct: 285 MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPDSWDSHLHLMEFAYNNSYQATI 344

Query: 61  GMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANV 120
           GM PFEALY +CC  PVCWDE+ EQRLM  +LVQSTNEA+QKIRS M TA SRQKSYA+V
Sbjct: 345 GMAPFEALYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAVQKIRSRMHTAQSRQKSYADV 404

Query: 121 RRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA 175
           RRKD EF VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILERI P+AY LA
Sbjct: 405 RRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLA 458

[Close]

BLAST of Cmc03g0074801.1 vs. ExPASy TrEMBL
Match: A0A5A7TDB5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41502G00010 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.9e-78
Identity = 144/174 (82.76%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 1   MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNS+QATI
Sbjct: 80  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 139

Query: 61  GMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANV 120
           GM PFEALY KCC  PVCWDE+ EQRLM  +LVQSTNEA+QKIRS M TA SRQKSYA+V
Sbjct: 140 GMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAVQKIRSRMHTAQSRQKSYADV 199

Query: 121 RRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA 175
           RRKD EF VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILER+ P+AY LA
Sbjct: 200 RRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERVGPVAYRLA 253

[Close]

BLAST of Cmc03g0074801.1 vs. ExPASy TrEMBL
Match: A0A5A7VBI2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold755G00010 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.4e-78
Identity = 144/174 (82.76%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 1   MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDF TAF+PQ D QTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNS+QATI
Sbjct: 80  MGTRLDFSTAFYPQTDDQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 139

Query: 61  GMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANV 120
           GM PFEALY KCC FPVCW E+ EQRLMC +LVQSTNEAIQKIRS M TA SRQKSYA+V
Sbjct: 140 GMAPFEALYGKCCRFPVCWGEVGEQRLMCPELVQSTNEAIQKIRSRMHTAQSRQKSYADV 199

Query: 121 RRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA 175
           RRKD EF VGDKVFLKVAPM+G+ RFERRG LSP FVGPFEILERI P+AY LA
Sbjct: 200 RRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLA 253

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BLAST of Cmc03g0074801.1 vs. ExPASy TrEMBL
Match: A0A5A7TTW5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00290 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.4e-78
Identity = 146/174 (83.91%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 1   MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNSFQATI
Sbjct: 662 MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATI 721

Query: 61  GMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTAHSRQKSYANV 120
           GM PFEALY KCC  PVCW E+ EQRLM  +LVQSTNEAIQKIRS MQTA SRQKSYA+V
Sbjct: 722 GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMQTAQSRQKSYADV 781

Query: 121 RRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA 175
           R+KD EF+VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILERI P+AY LA
Sbjct: 782 RQKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIDPVAYRLA 835

The following BLAST results are available for this feature:

BLAST of Cmc03g0074801.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057119.1	5.7e-89	93.14	pol protein [Cucumis melo var. makuwa] >TYJ97103.1 pol protein [Cucumis melo var...	[more]
KAA0043669.1	2.7e-78	83.33	pol protein [Cucumis melo var. makuwa]	[more]
KAA0041424.1	1.0e-77	82.76	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063786.1	1.3e-77	82.76	pol protein [Cucumis melo var. makuwa]	[more]
KAA0045277.1	1.7e-77	83.91	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0074801.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	8.8e-16	28.57	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	8.8e-16	28.57	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	8.8e-16	28.57	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	8.8e-16	28.57	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	8.8e-16	28.57	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc03g0074801.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUA0	2.8e-89	93.14	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00080 PE...	[more]
A0A5A7TR61	1.3e-78	83.33	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19461G00010 ...	[more]
A0A5A7TDB5	4.9e-78	82.76	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41502G00010 ...	[more]
A0A5A7VBI2	6.4e-78	82.76	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold755G00010 PE...	[more]
A0A5A7TTW5	8.4e-78	83.91	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00290 PE...	[more]

BLAST of Cmc03g0074801.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..114 e-value: 2.4E-18 score: 68.1
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 26..173
None	No IPR available	PANTHER	PTHR46148:SF18	IPP TRANSFERASE	coord: 26..173
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..72 score: 10.013008
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc03g0074801	Cmc03g0074801	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0074801.1-exon	Cmc03g0074801.1-exon-CMiso1.1chr03:22244354..22244899	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0074801.1-cds	Cmc03g0074801.1-cds-CMiso1.1chr03:22244354..22244899	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc03g0074801.1	Cmc03g0074801.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding