Cmc03g0070241.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc03g0070241.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr03: 15961846 .. 15963180 (-)
Sequence length	1254
RNA-Seq Expression	Cmc03g0070241.1
Synteny	Cmc03g0070241.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTTCTACCTAAAAAGAAAAAAAAAAATCTCAATCTTTCTCATTCTCTCAAAAAAAAAAAAAAGCAAAAAAAACTCTCTTTCTTTCCTAAATTTCCTTTCATTTCTCTTTATTTCCCATGATTCTTTTTCCTTTCTTCTTCCCTTTCCCGTGAAATTTCCAAATACGAAGCCGTAGCTCACACCGCTGCACGTCGACGACTCCAGCTCCTTCCACCGCCGCAGCTTCCATCAATCCACGCTGTCGGTAACCTGCTCTTCCTCCTCCTCTTTTCTTTGACTCTCTTCGAAGCCAACGACAACTAGAACTCAGCGTCCCGCTGCTGACAATCGGATTCATCATATACGATGGGCCAACTGCAGCCAAGTCGACCATTAAGGCCATTGAATTTGACGGTGTGGAGTTTCACAGAAGGGTTTTGACTGTGAAATTGGATGATGGGAGGAGGTTAAAGGAGAAGACGGATGAGAGGGCGAGATGGATGGAGGGAGATGACAGCGTGGAGTATCGTTCCCATTGGCATGAAGAGAGGATAAAGCACGAAATGGCTTTGGCAAGGTTATTGAGACAGATCCAGAGAACTGGCAGGCGGTTGTATCGGCTTTCGAGAGGATCAAGAAGGTAGTTTCTTGAATTCCTTTGAAATGTTTTTGAATTAGCGGGTTCTGAATTGTGCGTTATTCTACCACCCACCACCCGCAGCAATTTCAACACTCGACAATTCGCCTCACAGAATGCCCTCGGACTTCCTGCTGCCGCCGTCTACTTCAATTCCTAGAAGCAACCTGCATCCAAGAAAGGCTGATATATATAACATATCCATATTCCGTACCACACTTTGTATGTTAATACCATACCCTCAACTTTTTTTCTACTTAGCAAATTTAGGCCTTCCCCTGCTGTTTCCCCCTAAACACACATGGAATAAATAAATCTTTATTTCCCCCATGTTTTCTGTTCTGTTTAAACAGAGTAATTGAGTAACATCTCAAACTTCACTTAGATTGAAAAAAAAAAATTAATAGTGGAAAAAGCAAAACATGAAATGGGAATTGAAAAGGGTGAGCCAGAATGAAGGAAGAAACGTGATTGAATGAAGCGCTGATGGGAAAAGTTGGAATTTTGAAATAAGTTCAGACATCAACATTGCACTCAATGACATATCTTTCAATCTGGTTTTATTATCGCTTCTTTCTGTTTACGAACAATATTTTCTGTATACATATATGAGATTGTGGATCAACTTTGCGGTACAAATTAAAAAAATAGTTAGTTGTATTGAATTGTACTATCCACATTTTCTTTTTTATCATTATTGATATTTCAACGTGGC

mRNA sequence

CTCTTTTCTACCTAAAAAGAAAAAAAAAAATCTCAATCTTTCTCATTCTCTCAAAAAAAAAAAAAAGCAAAAAAAACTCTCTTTCTTTCCTAAATTTCCTTTCATTTCTCTTTATTTCCCATGATTCTTTTTCCTTTCTTCTTCCCTTTCCCGTGAAATTTCCAAATACGAAGCCGTAGCTCACACCGCTGCACGTCGACGACTCCAGCTCCTTCCACCGCCGCAGCTTCCATCAATCCACGCTGTCGGTAACCTGCTCTTCCTCCTCCTCTTTTCTTTGACTCTCTTCGAAGCCAACGACAACTAGAACTCAGCGTCCCGCTGCTGACAATCGGATTCATCATATACGATGGGCCAACTGCAGCCAAGTCGACCATTAAGGCCATTGAATTTGACGGTGTGGAGTTTCACAGAAGGGTTTTGACTGTGAAATTGGATGATGGGAGGAGGTTAAAGGAGAAGACGGATGAGAGGGCGAGATGGATGGAGGGAGATGACAGCGTGGAGTATCGTTCCCATTGGCATGAAGAGAGGATAAAGCACGAAATGGCTTTGGCAAGGTTATTGAGACAGATCCAGAGAACTGGCAGGCGGTTGTATCGGCTTTCGAGAGGATCAAGAAGCAATTTCAACACTCGACAATTCGCCTCACAGAATGCCCTCGGACTTCCTGCTGCCGCCGTCTACTTCAATTCCTAGAAGCAACCTGCATCCAAGAAAGGCTGATATATATAACATATCCATATTCCGTACCACACTTTGTATGTTAATACCATACCCTCAACTTTTTTTCTACTTAGCAAATTTAGGCCTTCCCCTGCTGTTTCCCCCTAAACACACATGGAATAAATAAATCTTTATTTCCCCCATGTTTTCTGTTCTGTTTAAACAGAGTAATTGAGTAACATCTCAAACTTCACTTAGATTGAAAAAAAAAAATTAATAGTGGAAAAAGCAAAACATGAAATGGGAATTGAAAAGGGTGAGCCAGAATGAAGGAAGAAACGTGATTGAATGAAGCGCTGATGGGAAAAGTTGGAATTTTGAAATAAGTTCAGACATCAACATTGCACTCAATGACATATCTTTCAATCTGGTTTTATTATCGCTTCTTTCTGTTTACGAACAATATTTTCTGTATACATATATGAGATTGTGGATCAACTTTGCGGTACAAATTAAAAAAATAGTTAGTTGTATTGAATTGTACTATCCACATTTTCTTTTTTATCATTATTGATATTTCAACGTGGC

Coding sequence (CDS)

ATGGAGGGAGATGACAGCGTGGAGTATCGTTCCCATTGGCATGAAGAGAGGATAAAGCACGAAATGGCTTTGGCAAGGTTATTGAGACAGATCCAGAGAACTGGCAGGCGGTTGTATCGGCTTTCGAGAGGATCAAGAAGCAATTTCAACACTCGACAATTCGCCTCACAGAATGCCCTCGGACTTCCTGCTGCCGCCGTCTACTTCAATTCCTAG

Protein sequence

MEGDDSVEYRSHWHEERIKHEMALARLLRQIQRTGRRLYRLSRGSRSNFNTRQFASQNALGLPAAAVYFNS

Homology

The following BLAST results are available for this feature:

BLAST of Cmc03g0070241.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc03g0070241.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc03g0070241.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc03g0070241.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036610	PEBP-like superfamily	GENE3D	3.90.280.10		coord: 2..71 e-value: 7.2E-6 score: 27.7
IPR036610	PEBP-like superfamily	SUPERFAMILY	49777	PEBP-like	coord: 36..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc03g0070241	Cmc03g0070241	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0070241.1-exon	Cmc03g0070241.1-exon-CMiso1.1chr03:15961846..15962476	exon
Cmc03g0070241.1-exon	Cmc03g0070241.1-exon-CMiso1.1chr03:15962558..15963180	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0070241.1-three_prime_utr	Cmc03g0070241.1-three_prime_utr-CMiso1.1chr03:15961846..15962400	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0070241.1-cds	Cmc03g0070241.1-cds-CMiso1.1chr03:15962401..15962476	CDS
Cmc03g0070241.1-cds	Cmc03g0070241.1-cds-CMiso1.1chr03:15962558..15962697	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0070241.1-five_prime_utr	Cmc03g0070241.1-five_prime_utr-CMiso1.1chr03:15962698..15963180	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc03g0070241.1	Cmc03g0070241.1-protein	polypeptide