Cmc03g0069791.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc03g0069791.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr03: 15210490 .. 15210930 (-)
Sequence length	441
RNA-Seq Expression	Cmc03g0069791.1
Synteny	Cmc03g0069791.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAATGATGGATCAATGCGCCTTTGCATCGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACCGCTATCCCTTGTCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTACGATCAGGCTACCACCAGCTGAGGATTAGAGATAGTGATATTCCTAAGACCGCTTTCCGTTCCAAATACGGACGTTACGAGTTCATTGTGATGTCCTTTGGTTTGACTAGTGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGACTTCTTAGACGCGTTTGTTATAGTTTTTATTGATGACATTTTAATTTACTCCAAGACTGAGGCTGAGCATGAAGAGCATTTGCATCAGGTTTTGGTGAGGTTTAGTTTCTTCTTTCTGAAACTAAACCATGTCCGATAA

mRNA sequence

ATGAAGAAGAATGATGGATCAATGCGCCTTTGCATCGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACCGCTATCCCTTGTCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTACGATCAGGCTACCACCAGCTGAGGATTAGAGATAGTGATATTCCTAAGACCGCTTTCCGTTCCAAATACGGACGTTACGAGTTCATTGTGATGTCCTTTGGTTTGACTAGTGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGACTTCTTAGACGCGTTTGTTATAGTTTTTATTGATGACATTTTAATTTACTCCAAGACTGAGGCTGAGCATGAAGAGCATTTGCATCAGGTTTTGGTGAGGTTTAGTTTCTTCTTTCTGAAACTAAACCATGTCCGATAA

Coding sequence (CDS)

ATGAAGAAGAATGATGGATCAATGCGCCTTTGCATCGACTACAGAGAGCTGAACAAGGTGACAGTCAAGAACCGCTATCCCTTGTCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTACGATCAGGCTACCACCAGCTGAGGATTAGAGATAGTGATATTCCTAAGACCGCTTTCCGTTCCAAATACGGACGTTACGAGTTCATTGTGATGTCCTTTGGTTTGACTAGTGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGACTTCTTAGACGCGTTTGTTATAGTTTTTATTGATGACATTTTAATTTACTCCAAGACTGAGGCTGAGCATGAAGAGCATTTGCATCAGGTTTTGGTGAGGTTTAGTTTCTTCTTTCTGAAACTAAACCATGTCCGATAA

Protein sequence

MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKTEAEHEEHLHQVLVRFSFFFLKLNHVR

Homology

[Close]

BLAST of Cmc03g0069791.1 vs. NCBI nr
Match: KAA0049632.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK15992.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 3.6e-73
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 348 MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 407

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+Y RYEFIVMSFGLT+APAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT
Sbjct: 408 SDIPKTAFRSRYERYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 467

Query: 121 EAEHEEHLHQVLVRFSFFFLKLNHVR 147
           E EHEEHLHQVLVRFSFFFLKLNHV+
Sbjct: 468 EVEHEEHLHQVLVRFSFFFLKLNHVQ 493

[Close]

BLAST of Cmc03g0069791.1 vs. NCBI nr
Match: KAA0063946.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.2e-64
Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           +KK DGSMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 860 VKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 919

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+YG YEF+VMSFGLT+APAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKT
Sbjct: 920 SDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKT 979

Query: 121 EAEHEEHLHQVL 133
           EAEHEEHLHQVL
Sbjct: 980 EAEHEEHLHQVL 991

[Close]

BLAST of Cmc03g0069791.1 vs. NCBI nr
Match: TYK18480.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.2e-64
Identity = 125/132 (94.70%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           +KK DGSMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 172 VKKKDGSMRLCIDYRELNKVTVKNRYPLLRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 231

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+YG YEFIVMSFGLT+APAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKT
Sbjct: 232 SDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKT 291

Query: 121 EAEHEEHLHQVL 133
           EAEHEEHLHQVL
Sbjct: 292 EAEHEEHLHQVL 303

[Close]

BLAST of Cmc03g0069791.1 vs. NCBI nr
Match: TYK04344.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 8.8e-64
Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           +KK DGSMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 407 LKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 466

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+YG YEFIVMSFGLT+APAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKT
Sbjct: 467 SDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKT 526

Query: 121 EAEHEEHLHQVL 133
           EA+HEEHLHQVL
Sbjct: 527 EAKHEEHLHQVL 538

[Close]

BLAST of Cmc03g0069791.1 vs. NCBI nr
Match: KAA0051386.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           +KK DGSMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 303 VKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 362

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+YG YEFIVMSFGLT+APAVFMDLMNRVFKDFLD+F IVFIDDILIYSKT
Sbjct: 363 SDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFAIVFIDDILIYSKT 422

Query: 121 EAEHEEHLHQVL 133
           EAEHEEHLHQVL
Sbjct: 423 EAEHEEHLHQVL 434

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.6e-34
Identity = 71/128 (55.47%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 7   SMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKT 66
           S+R+CIDYR L KVT+KN+YP+ R+DDLFD+L  AT F+K+DLRSGY Q+RI   D PKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 67  AFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDIL---IYSKTEAE 126
              ++YG +EF VM FGLT+A A F +LMN V  ++LD FV+V++DD++   IYS +  E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 127 HEEHLHQV 132
           H +HL  V
Sbjct: 125 HIKHLRVV 132

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 5.6e-29
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 3   KNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSD 62
           K DG+ RLC+DYR LNK T+ + +PL RID+L  ++  A +F+ +DL SGYHQ+ +   D
Sbjct: 641 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 700

Query: 63  IPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKTEA 122
             KTAF +  G+YE+ VM FGL +AP+ F   M   F+D    FV V++DDILI+S++  
Sbjct: 701 RYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPE 760

Query: 123 EHEEHLHQVLVR 135
           EH +HL  VL R
Sbjct: 761 EHWKHLDTVLER 770

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 5.6e-29
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 3   KNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSD 62
           K DG+ RLC+DYR LNK T+ + +PL RID+L  ++  A +F+ +DL SGYHQ+ +   D
Sbjct: 667 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 726

Query: 63  IPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKTEA 122
             KTAF +  G+YE+ VM FGL +AP+ F   M   F+D    FV V++DDILI+S++  
Sbjct: 727 RYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPE 786

Query: 123 EHEEHLHQVLVR 135
           EH +HL  VL R
Sbjct: 787 EHWKHLDTVLER 796

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.1e-28
Identity = 57/144 (39.58%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 3   KNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSD 62
           K +G++R+ +DY+ LNK    N YPL  I+ L  ++QG+T+F+K+DL+S YH +R+R  D
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516

Query: 63  IPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKTEA 122
             K AFR   G +E++VM +G+++APA F   +N +  +  ++ V+ ++DDILI+SK+E+
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSES 576

Query: 123 EHEEHLHQVLVRFSFFFLKLNHVR 147
           EH +H+  VL +     L +N  +
Sbjct: 577 EHVKHVKDVLQKLKNANLIINQAK 600

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.1e-28
Identity = 57/144 (39.58%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 3   KNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSD 62
           K +G++R+ +DY+ LNK    N YPL  I+ L  ++QG+T+F+K+DL+S YH +R+R  D
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516

Query: 63  IPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKTEA 122
             K AFR   G +E++VM +G+++APA F   +N +  +  ++ V+ ++DDILI+SK+E+
Sbjct: 517 EHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSES 576

Query: 123 EHEEHLHQVLVRFSFFFLKLNHVR 147
           EH +H+  VL +     L +N  +
Sbjct: 577 EHVKHVKDVLQKLKNANLIINQAK 600

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy TrEMBL
Match: A0A5A7U1I4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001210 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.7e-73
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 348 MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 407

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+Y RYEFIVMSFGLT+APAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT
Sbjct: 408 SDIPKTAFRSRYERYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 467

Query: 121 EAEHEEHLHQVLVRFSFFFLKLNHVR 147
           E EHEEHLHQVLVRFSFFFLKLNHV+
Sbjct: 468 EVEHEEHLHQVLVRFSFFFLKLNHVQ 493

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy TrEMBL
Match: A0A5A7VBY3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00920 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           +KK DGSMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 860 VKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 919

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+YG YEF+VMSFGLT+APAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKT
Sbjct: 920 SDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKT 979

Query: 121 EAEHEEHLHQVL 133
           EAEHEEHLHQVL
Sbjct: 980 EAEHEEHLHQVL 991

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy TrEMBL
Match: A0A5D3D4M7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00520 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 125/132 (94.70%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           +KK DGSMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 172 VKKKDGSMRLCIDYRELNKVTVKNRYPLLRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 231

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+YG YEFIVMSFGLT+APAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKT
Sbjct: 232 SDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKT 291

Query: 121 EAEHEEHLHQVL 133
           EAEHEEHLHQVL
Sbjct: 292 EAEHEEHLHQVL 303

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy TrEMBL
Match: A0A5D3BZD2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00070 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.3e-64
Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           +KK DGSMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 407 LKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 466

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+YG YEFIVMSFGLT+APAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKT
Sbjct: 467 SDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKT 526

Query: 121 EAEHEEHLHQVL 133
           EA+HEEHLHQVL
Sbjct: 527 EAKHEEHLHQVL 538

[Close]

BLAST of Cmc03g0069791.1 vs. ExPASy TrEMBL
Match: A0A5A7UB12 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001260 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.6e-64
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 60
           +KK DGSMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRD
Sbjct: 303 VKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 362

Query: 61  SDIPKTAFRSKYGRYEFIVMSFGLTSAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKT 120
           SDIPKTAFRS+YG YEFIVMSFGLT+APAVFMDLMNRVFKDFLD+F IVFIDDILIYSKT
Sbjct: 363 SDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFAIVFIDDILIYSKT 422

Query: 121 EAEHEEHLHQVL 133
           EAEHEEHLHQVL
Sbjct: 423 EAEHEEHLHQVL 434

The following BLAST results are available for this feature:

BLAST of Cmc03g0069791.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049632.1	3.6e-73	96.58	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK15992.1 D...	[more]
KAA0063946.1	5.2e-64	93.94	pol protein [Cucumis melo var. makuwa]	[more]
TYK18480.1	5.2e-64	94.70	pol protein [Cucumis melo var. makuwa]	[more]
TYK04344.1	8.8e-64	93.94	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0051386.1	1.2e-63	93.94	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0069791.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	7.6e-34	55.47	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	5.6e-29	47.73	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.6e-29	47.73	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	8.1e-28	39.58	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	8.1e-28	39.58	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc03g0069791.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1I4	1.7e-73	96.58	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7VBY3	2.5e-64	93.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]
A0A5D3D4M7	2.5e-64	94.70	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00520 PE...	[more]
A0A5D3BZD2	4.3e-64	93.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold67...	[more]
A0A5A7UB12	5.6e-64	93.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]

BLAST of Cmc03g0069791.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..144 e-value: 9.0E-23 score: 80.9
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..146 score: 11.376495
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..86 e-value: 9.2E-58 score: 197.0
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..143
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..143
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..143 e-value: 1.33109E-67 score: 200.514
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 26..143 e-value: 9.2E-58 score: 197.0
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc03g0069791	Cmc03g0069791	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0069791.1-exon	Cmc03g0069791.1-exon-CMiso1.1chr03:15210490..15210930	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0069791.1-cds	Cmc03g0069791.1-cds-CMiso1.1chr03:15210490..15210930	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc03g0069791.1	Cmc03g0069791.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding