Cmc02g0042511.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc02g0042511.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 4347864 .. 4349057 (+)
Sequence length	1038
RNA-Seq Expression	Cmc02g0042511.1
Synteny	Cmc02g0042511.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCAAATTAGCATTTTTGAATGGATGTTTAGAAGAAGAAGTTTACTTAGAACAACCTCTTGGTAGTTCTGTGAAAGGTCAAGAGGATAAAGTTTTAAAATTAAAGAAGACATTATATGGATTGAAACAAGCACCCAGAATGTGGAATAACATAATTAACATATATTTCCTTGATAATGGGTATTTGAGGTGTCCTTATGAACATTCTCTTTATCTTAAGTCTAATGGTCATGGAGATATTTTGGTGGTTTGTTTATACGTGGATGACTTAATTTTTACTAAAAATTGTGCAAGTATGTTTGAAGATCTCAAGAAGACGCTGACTCAAGAATTTGAAATCACAGATATAAGATTGATGTCATATTATCTTGGCATTGAGGTGAAGCAGTCAGAGGAAGATATTTTCATCTCTCAAGAACGATATACTAAAGAAATTCTAGAGAAGTTCAATATGATCAATTCTAGGCTTGTCACAACTTCGATTGAAACTGAGATCAAACTGTCCAAATATGAAGACAGAGATGATGTTGATCCTTCATATTTCAAAAATTTGGTTGGGAGTTTAAGATATTTGACTTGCACACGATTAAATATTCTTTTTTGGATTGGTGGGTCAATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAAGGCTTCGTTACCTCAAAGGTATGCTTGCTATAGGTTATTTTATTCTTTATCTAAAGAATTCAAGCTTGAAGGCTATTATGATAGTGACTGGACTAGAGTTACTAACGATCTAAAGAGCACTAGTGGATATGTTTTCTTCTCTGGTATTACTGCATTTACTTGAAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCAGAATACATTGTTGCAGCTTCATGTGTTTGTCATGCTGTTTGGTTAAGAAATTTGTTAAAGATAGTTGGAATTTTGCAGGATGATCCAACTATGATCCATGTAGACAATAAGTCAGCAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCATAGTAAACACATTGATACAAGATCTCACTTCATCAGAGATTGCATTTCAAGAAAGGAGGTTCAAGATGAATATGTGAAGACTGAAGATCAAATTGCAGATATCTTCACGAAGTCACTCAAAGTTAATGAGTTTAGCAAGTTAAGAACTTTGCTTGGAGTTTTTTAG

mRNA sequence

ATGGATGTCAAATTAGCATTTTTGAATGGATGTTTAGAAGAAGAAGTTTACTTAGAACAACCTCTTGGTAGTTCTGTGAAAGGTCAAGAGGATAAAGTTTTAAAATTAAAGAAGACATTATATGGATTGAAACAAGCACCCAGAATGTGGAATAACATAATTAACATATATTTCCTTGATAATGGGTATTTGAGGTGTCCTTATGAACATTCTCTTTATCTTAAGTCTAATGGTCATGGAGATATTTTGGTGGTTTGTTTATACGTGGATGACTTAATTTTTACTAAAAATTGTGCAAGTATGTTTGAAGATCTCAAGAAGACGCTGACTCAAGAATTTGAAATCACAGATATAAGATTGATGTCATATTATCTTGGCATTGAGGTGAAGCAGTCAGAGGAAGATATTTTCATCTCTCAAGAACGATATACTAAAGAAATTCTAGAGAAGTTCAATATGATCAATTCTAGGCTTGTCACAACTTCGATTGAAACTGAGATCAAACTGTCCAAATATGAAGACAGAGATGATGTTGATCCTTCATATTTCAAAAATTTGGTTGGGAGTTTAAGATATTTGACTTGCACACGATTAAATATTCTTTTTTGGATTGGTGGGTCAATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAAGGCTTCGTTACCTCAAAGGTATGCTTGCTATAGGTTATTTTATTCTTTATCTAAAGAATTCAAGCTTGAAGGCTATTATGATAGTGACTGGACTAGAGTTACTAACGATCTAAAGAGCACTAGTGGATATGATGATCCAACTATGATCCATGTAGACAATAAGTCAGCAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCATAGTAAACACATTGATACAAGATCTCACTTCATCAGAGATTGCATTTCAAGAAAGGAGGTTCAAGATGAATATGTGAAGACTGAAGATCAAATTGCAGATATCTTCACGAAGTCACTCAAAGTTAATGAGTTTAGCAAGTTAAGAACTTTGCTTGGAGTTTTTTAG

Coding sequence (CDS)

ATGGATGTCAAATTAGCATTTTTGAATGGATGTTTAGAAGAAGAAGTTTACTTAGAACAACCTCTTGGTAGTTCTGTGAAAGGTCAAGAGGATAAAGTTTTAAAATTAAAGAAGACATTATATGGATTGAAACAAGCACCCAGAATGTGGAATAACATAATTAACATATATTTCCTTGATAATGGGTATTTGAGGTGTCCTTATGAACATTCTCTTTATCTTAAGTCTAATGGTCATGGAGATATTTTGGTGGTTTGTTTATACGTGGATGACTTAATTTTTACTAAAAATTGTGCAAGTATGTTTGAAGATCTCAAGAAGACGCTGACTCAAGAATTTGAAATCACAGATATAAGATTGATGTCATATTATCTTGGCATTGAGGTGAAGCAGTCAGAGGAAGATATTTTCATCTCTCAAGAACGATATACTAAAGAAATTCTAGAGAAGTTCAATATGATCAATTCTAGGCTTGTCACAACTTCGATTGAAACTGAGATCAAACTGTCCAAATATGAAGACAGAGATGATGTTGATCCTTCATATTTCAAAAATTTGGTTGGGAGTTTAAGATATTTGACTTGCACACGATTAAATATTCTTTTTTGGATTGGTGGGTCAATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAAGGCTTCGTTACCTCAAAGGTATGCTTGCTATAGGTTATTTTATTCTTTATCTAAAGAATTCAAGCTTGAAGGCTATTATGATAGTGACTGGACTAGAGTTACTAACGATCTAAAGAGCACTAGTGGATATGATGATCCAACTATGATCCATGTAGACAATAAGTCAGCAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCATAGTAAACACATTGATACAAGATCTCACTTCATCAGAGATTGCATTTCAAGAAAGGAGGTTCAAGATGAATATGTGAAGACTGAAGATCAAATTGCAGATATCTTCACGAAGTCACTCAAAGTTAATGAGTTTAGCAAGTTAAGAACTTTGCTTGGAGTTTTTTAG

Protein sequence

MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLDNGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRLMSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDPSYFKNLVGSLRYLTCTRLNILFWIGGSIYGISYNYSFESGKEKASLPQRYACYRLFYSLSKEFKLEGYYDSDWTRVTNDLKSTSGYDDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCISRKEVQDEYVKTEDQIADIFTKSLKVNEFSKLRTLLGVF

Homology

[Close]

BLAST of Cmc02g0042511.1 vs. NCBI nr
Match: TYK03241.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 495.0 bits (1273), Expect = 5.4e-136
Identity = 270/399 (67.67%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 830  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 889

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 890  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 949

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 950  MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 1009

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
            SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 1010 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 1069

Query: 241  LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
             SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 1070 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 1129

Query: 301  --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                                +DPT+IHVDNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 1130 SCVCHAVWLRNLLKTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 1189

[Close]

BLAST of Cmc02g0042511.1 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 494.6 bits (1272), Expect = 7.0e-136
Identity = 269/399 (67.42%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 1112

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
            SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 1113 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 1172

Query: 241  LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
             SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 1173 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 1232

Query: 301  --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                                +DPT+IH+DNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 1233 SCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 1292

[Close]

BLAST of Cmc02g0042511.1 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 494.6 bits (1272), Expect = 7.0e-136
Identity = 269/399 (67.42%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 1112

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
            SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 1113 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 1172

Query: 241  LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
             SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 1173 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 1232

Query: 301  --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                                +DPT+IH+DNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 1233 SCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 1292

[Close]

BLAST of Cmc02g0042511.1 vs. NCBI nr
Match: TYK13816.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 494.6 bits (1272), Expect = 7.0e-136
Identity = 269/399 (67.42%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 958  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 1017

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 1018 NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1077

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 1078 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 1137

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
            SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 1138 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 1197

Query: 241  LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
             SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 1198 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 1257

Query: 301  --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                                +DPT+IH+DNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 1258 SCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 1317

[Close]

BLAST of Cmc02g0042511.1 vs. NCBI nr
Match: KAA0031444.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 494.6 bits (1272), Expect = 7.0e-136
Identity = 269/399 (67.42%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 1112

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
            SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 1113 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 1172

Query: 241  LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
             SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 1173 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 1232

Query: 301  --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                                +DPT+IH+DNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 1233 SCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 1292

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 183.0 bits (463), Expect = 5.9e-45
Identity = 123/408 (30.15%), Postives = 195/408 (47.79%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG L+EE+Y+  P G S     D V KL K +YGLKQA R W  +      +
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISC--NSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   NGYLRCPYEHSLYLKSNGH-GDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIR 120
              ++    +  +Y+   G+  + + V LYVDD++      +   + K+ L ++F +TD+ 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  LMSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVD 180
             + +++GI ++  E+ I++SQ  Y K+IL KFNM N   V+T + ++I        +D +
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN 1180

Query: 181  PSYFKNLVGSLRY-LTCTRLNILFWIGGSIYGISYNYSFESGKEKASLPQRYACY----- 240
             +  ++L+G L Y + CTR ++      +   I   YS ++  E     +R   Y     
Sbjct: 1181 -TPCRSLIGCLMYIMLCTRPDLT-----TAVNILSRYSSKNNSELWQNLKRVLRYLKGTI 1240

Query: 241  --RLFY--SLSKEFKLEGYYDSDWTRVTNDLKSTSGY----------------------- 300
              +L +  +L+ E K+ GY DSDW     D KST+GY                       
Sbjct: 1241 DMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAAS 1300

Query: 301  ------------------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHID 345
                                          ++P  I+ DN+  I++A NP  H  +KHID
Sbjct: 1301 STEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHID 1360

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.4e-43
Identity = 121/402 (30.10%), Postives = 184/402 (45.77%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            +DV  AFL G L ++VY+ QP G   K + + V KL+K LYGLKQAPR W   +  Y L 
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
             G++    + SL++   G   I+ + +YVDD++ T N  ++  +    L+Q F + D   
Sbjct: 1124 IGFVNSVSDTSLFVLQRGK-SIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEE 1183

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            + Y+LGIE K+    + +SQ RY  ++L + NMI ++ VTT +    KLS Y      DP
Sbjct: 1184 LHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDP 1243

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIGGSIYGISYNYSFESGKEKASLPQ--RYAC----YR 240
            + ++ +VGSL+YL  TR +I +    ++  +S      + +   +L +  RY      + 
Sbjct: 1244 TEYRGIVGSLQYLAFTRPDISY----AVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHG 1303

Query: 241  LFYSLSKEFKLEGYYDSDWTRVTNDLKSTSGY---------------------------- 300
            +F        L  Y D+DW    +D  ST+GY                            
Sbjct: 1304 IFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEY 1363

Query: 301  ------------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFI 345
                                      P +I+ DN  A  L  NPVFH   KHI    HFI
Sbjct: 1364 RSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFI 1423

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.6e-42
Identity = 118/402 (29.35%), Postives = 184/402 (45.77%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            +DV  AFL G L +EVY+ QP G   K + D V +L+K +YGLKQAPR W   +  Y L 
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
             G++    + SL++   G   I+ + +YVDD++ T N   + +     L+Q F + +   
Sbjct: 1107 VGFVNSISDTSLFVLQRGR-SIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHED 1166

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            + Y+LGIE K+  + + +SQ RYT ++L + NM+ ++ V T + T  KL+ +      DP
Sbjct: 1167 LHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDP 1226

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIGGSIYGISYNYSFESGKEKASLPQ--RYAC----YR 240
            + ++ +VGSL+YL  TR ++ +    ++  +S      +     +L +  RY      + 
Sbjct: 1227 TEYRGIVGSLQYLAFTRPDLSY----AVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHG 1286

Query: 241  LFYSLSKEFKLEGYYDSDWTRVTNDLKSTSGY---------------------------- 300
            +F        L  Y D+DW   T+D  ST+GY                            
Sbjct: 1287 IFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEY 1346

Query: 301  ------------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFI 345
                                      P +I+ DN  A  L  NPVFH   KHI    HFI
Sbjct: 1347 RSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFI 1406

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.7e-39
Identity = 115/411 (27.98%), Postives = 199/411 (48.42%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            +DVK AFL+G LEEE+Y+EQP G  V G++  V KL K+LYGLKQAPR W    + +   
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
              YL+   +  +Y K     + +++ LYVDD++       +   LK  L++ F++ D+  
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  MSYYLGIEV--KQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSK------Y 180
                LG+++  +++   +++SQE+Y + +LE+FNM N++ V+T +   +KLSK       
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTV 1100

Query: 181  EDRDDVDPSYFKNLVGSLRY-LTCTRLNILFWIGGSIYGISYNYSFESGKEKASLPQRYA 240
            E++ ++    + + VGSL Y + CTR +I   +     G+   +    GKE     +   
Sbjct: 1101 EEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAV-----GVVSRFLENPGKEHWEAVKWIL 1160

Query: 241  CYR-------LFYSLSKEFKLEGYYDSDWTRVTNDLKSTSGY------------------ 300
             Y        L +  S    L+GY D+D     ++ KS++GY                  
Sbjct: 1161 RYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1220

Query: 301  ---------------------------------DDPTMIHVDNKSAIALAKNPVFHDHSK 345
                                                 +++ D++SAI L+KN ++H  +K
Sbjct: 1221 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTK 1280

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 5.6e-19
Identity = 60/197 (30.46%), Postives = 101/197 (51.27%), Query Frame = 0


Query: 1   MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
           MDV  AFLN  ++E +Y++QP G   +   D V +L   +YGLKQAP +WN  IN     
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            G+ R   EH LY +S   G I  + +YVDDL+       +++ +K+ LT+ + + D+  
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPI-YIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGK 120

Query: 121 MSYYLGIEVKQSEE-DIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVD 180
           +  +LG+ + QS   DI +S + Y  +   +  +   +L  T +     L +       D
Sbjct: 121 VDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKD 180

Query: 181 PSYFKNLVGSLRYLTCT 197
            + ++++VG L +   T
Sbjct: 181 ITPYQSIVGQLLFCANT 196

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy TrEMBL
Match: A0A5D3BU42 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00570 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.6e-136
Identity = 270/399 (67.67%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 830  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 889

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 890  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 949

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 950  MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 1009

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
            SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 1010 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 1069

Query: 241  LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
             SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 1070 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 1129

Query: 301  --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                                +DPT+IHVDNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 1130 SCVCHAVWLRNLLKTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 1189

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.4e-136
Identity = 269/399 (67.42%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 1112

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
            SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 1113 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 1172

Query: 241  LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
             SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 1173 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 1232

Query: 301  --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                                +DPT+IH+DNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 1233 SCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 1292

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.4e-136
Identity = 269/399 (67.42%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 1112

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
            SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 1113 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 1172

Query: 241  LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
             SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 1173 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 1232

Query: 301  --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                                +DPT+IH+DNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 1233 SCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 1292

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy TrEMBL
Match: A0A5D3D497 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00810 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.4e-136
Identity = 269/399 (67.42%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1    MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
            MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 933  MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 992

Query: 61   NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
            NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 993  NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 1052

Query: 121  MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
            MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 1053 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 1112

Query: 181  SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
            SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 1113 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 1172

Query: 241  LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
             SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 1173 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 1232

Query: 301  --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                                +DPT+IH+DNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 1233 SCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 1292

[Close]

BLAST of Cmc02g0042511.1 vs. ExPASy TrEMBL
Match: A0A5D3D557 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00080 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.4e-136
Identity = 269/399 (67.42%), Postives = 287/399 (71.93%), Query Frame = 0


Query: 1   MDVKLAFLNGCLEEEVYLEQPLGSSVKGQEDKVLKLKKTLYGLKQAPRMWNNIINIYFLD 60
           MDVK AFLNG LEEEVYLEQP G SVKGQEDKVLKLKK LYGLKQAPRMWN+ IN YFLD
Sbjct: 373 MDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLD 432

Query: 61  NGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRL 120
           NGYLRCPYEHSLY+K NGHGDILVVCLYVDDLIFT NCASMFEDLKK +TQEFE+TDI L
Sbjct: 433 NGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGL 492

Query: 121 MSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRDDVDP 180
           MSYYLGIEVKQSEE IFISQERYT+EILEKFNM+NS+ V T IET  KLSK+E+ DDVDP
Sbjct: 493 MSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDP 552

Query: 181 SYFKNLVGSLRYLTCTRLNILFWIG--GSIYGISYNYSFESGKEKASLPQRYACYRLFYS 240
           SYFK+LVGSLRYLTCTR +ILF +G              +  K      +    Y LFYS
Sbjct: 553 SYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYS 612

Query: 241 LSKEFKLEGYYDSDWTRVTNDLKSTSGY-------------------------------- 300
            SKEFKLEGY DSDW   TND KSTSGY                                
Sbjct: 613 SSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAA 672

Query: 301 --------------------DDPTMIHVDNKSAIALAKNPVFHDHSKHIDTRSHFIRDCI 346
                               +DPT+IH+DNKS IALAKNPVFHD SKHIDTR HFIRDCI
Sbjct: 673 SCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCI 732

[Close]

BLAST of Cmc02g0042511.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 136.3 bits (342), Expect = 4.5e-32
Identity = 95/372 (25.54%), Postives = 167/372 (44.89%), Query Frame = 0


Query: 1   MDVKLAFLNGCLEEEVYLEQPLGSSVKGQE----DKVLKLKKTLYGLKQAPRMWNNIINI 60
           +D+  AFLNG L+EE+Y++ P G + +  +    + V  LKK++YGLKQA R W    ++
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YFLDNGYLRCPYEHSLYLKSNGHGDILVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEIT 120
             +  G+++   +H+ +LK       L V +YVDD+I   N  +  ++LK  L   F++ 
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITA-TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLR 312

Query: 121 DIRLMSYYLGIEVKQSEEDIFISQERYTKEILEKFNMINSRLVTTSIETEIKLSKYEDRD 180
           D+  + Y+LG+E+ +S   I I Q +Y  ++L++  ++  +  +  ++  +  S +   D
Sbjct: 313 DLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGD 372

Query: 181 DVDPSYFKNLVGSLRYLTCTRLNILFWIGGSIYGISYNYSFESGKEKASLPQRYACYR-- 240
            VD   ++ L+G L YL  TRL+I F +                 E   L  + A  +  
Sbjct: 373 FVDAKAYRRLIGRLMYLQITRLDISFAVN----------KLSQFSEAPRLAHQQAVMKIL 432

Query: 241 ----------LFYSLSKEFKLEGYYDSDWTRVTNDLKSTSGY------------------ 300
                     LFYS   E +L+ + D+ +    +  +ST+GY                  
Sbjct: 433 HYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQV 492

Query: 301 ----------------------------------DDPTMIHVDNKSAIALAKNPVFHDHS 305
                                               PT++  DN +AI +A N VFH+ +
Sbjct: 493 VSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERT 552

[Close]

BLAST of Cmc02g0042511.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 8.5e-15
Identity = 52/192 (27.08%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 83  LVVCLYVDDLIFTKNCASMFEDLKKTLTQEFEITDIRLMSYYLGIEVKQSEEDIFISQER 142
           + + LYVDD++ T +  ++   L   L+  F + D+  + Y+LGI++K     +F+SQ +
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 143 YTKEILEKFNMINSRLVTT----SIETEIKLSKYEDRDDVDPSYFKNLVGSLRYLTCTRL 202
           Y ++IL    M++ + ++T     + + +  +KY      DPS F+++VG+L+YLT TR 
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-----DPSDFRSIVGALQYLTLTRP 120

Query: 203 NILFWIGGSIYGISYNYSFESGKEKASLPQRYACYRLFYSL----SKEFKLEGYYDSDWT 262
           +I + +      +      +    K  L  RY    +F+ L    + +  ++ + DSDW 
Sbjct: 121 DISYAVNIVCQRMHEPTLADFDLLKRVL--RYVKGTIFHGLYIHKNSKLNVQAFCDSDWA 180

Query: 263 RVTNDLKSTSGY 267
             T+  +ST+G+
Sbjct: 181 GCTSTRRSTTGF 185

The following BLAST results are available for this feature:

BLAST of Cmc02g0042511.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03241.1	5.4e-136	67.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK18362.1	7.0e-136	67.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	7.0e-136	67.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK13816.1	7.0e-136	67.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0031444.1	7.0e-136	67.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc02g0042511.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	5.9e-45	30.15	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	9.4e-43	30.10	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.6e-42	29.35	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	3.7e-39	27.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P25600	5.6e-19	30.46	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc02g0042511.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BU42	2.6e-136	67.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	3.4e-136	67.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	3.4e-136	67.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D497	3.4e-136	67.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D557	3.4e-136	67.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc02g0042511.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.5e-32	25.54	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	8.5e-15	27.08	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..163 e-value: 8.1E-46 score: 156.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..198
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 246..330 e-value: 1.12926E-32 score: 116.799
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..202

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc02g0042511	Cmc02g0042511	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc02g0042511.1-exon	Cmc02g0042511.1-exon-CMiso1.1chr02:4347864..4348661	exon
Cmc02g0042511.1-exon	Cmc02g0042511.1-exon-CMiso1.1chr02:4348818..4349057	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc02g0042511.1-cds	Cmc02g0042511.1-cds-CMiso1.1chr02:4347864..4348661	CDS
Cmc02g0042511.1-cds	Cmc02g0042511.1-cds-CMiso1.1chr02:4348818..4349057	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc02g0042511.1	Cmc02g0042511.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding