Cmc01g0019171.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc01g0019171.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	CRM domain-containing protein
Location	CMiso1.1chr01: 16834353 .. 16837502 (-)
Sequence length	1344
RNA-Seq Expression	Cmc01g0019171.1
Synteny	Cmc01g0019171.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTTTCAGTCTGACTGAAGCCGAACCCAAAAGGGAAGCAAAAATGAGGGCTTCGATAATCTCCTCTCACTCTCACTCTCACTCTCACTCTCTCCTTCTCCGCTCAGTCCCCTCCTCCTTCTCCACCTTCTTCTCTAAACCCTCCGCCACCGCCGCCTTCTCCACAGTTTGTTTCCATCAATTTAAGCCCAGCAGTTCAACCTTCCTCACTCGCAAGTCTCCTCACTATTCCCGCCCTTTCACTCCCTCCACATCCCTTTCCTTCTCTCGCTTTTTCTCCTCCACCGTTTCCGGTCCCTCCGAGGTCAGATTTGATGAAGGTGACGATGAAATTGAAGACAAAGACGAAAGTGATTACGAAGATGAAGTTGAAATGGAAGATTCCGTTGGGGATGGAACGGAAAACGGTGTGGCTTCGGAGCTGTCTTCGCCGGTTATGAATAGAAATGAAGTGAAGAATATTCCGAGCTTGACGATTAAGGAGAAGAAGGAGCTGGCATCGTATGCTCATGGTTTGGGGAAGAAGCTGAAAAGTCAGTTGGTGGGAAAGTCTGGCGTCACTCCTGGTTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTTAAGGTTTGTTTCTTCTTTCAACATTCTCTTCTCTATTTTTTTTGAGTTATATTTTGGATGTTTTGATACTATCCATCAAGTCTATATGGTTTTAAGAATTAGGATTGATAAATTAATCATTTGAAGGGAACCAGTGCCGTGAACATCAATTGTCTTTGCAAAAATTTCTTTTCTGCTTCTTGTAGAACTTGAATACCTAGAACACTCCGAACATAAAAGGGGAAATCGTCAGAAACAAGCCTCAAATGTTTTCATCTTGAGAGAACTCCATGAAATAGTTATTTTTGCTCCTTGCCACCCTTTGAGAGACTCGATGAAACAGTTTTTTTTCAGTCCTGGCCGGTCGAGATCAAAGCTCGACTCTAAACATAAGCGGAAAATAGTAAAAGATAATCCTAAACAGTTTTCGTCTTTGGTACCCTTTTGAGAGAGCTCGATAAAATAGTTTTTTTTTCCGCCCTTGCAACCGTTTGAGAAAATTATAGTTTTCTGTCTTTGCCGGTCGAGATCCGAATAAAAATTCTCTTATTTTATTGTACATCCATACAATCATTTTTTGGTCTTTATAGAATCTCAATCAAGGTGGACCGAGATTATATTGATATTTCTCAACTGGATTTCGGATTCTCGGGTATGTAGTTAAGAGGACAACAATGTCTGTATATATTTTCAAAAGAGTTTTCAGAAGGGTGTTAGTTATGAAAGAAGAAAATCTTTTGAGGTTACTTCTGACAATTTCCTAACAAAATTGCTTGTATGTAGTAATGTCAATTACATTGGATCTTGGAGAAAAGAAATTTGTCTCTTAGAAAGTAAATTTCAATTGTTATTATAGAATGGTTGATTAACTACTAAGGGATGGAAAATGTTTGTGTATAGAACTGACTTCCATCATATGATTCCATTGATCATATATTGAATTTGTTGATAGATAAGAAAGGGATCTTTTCATTAATTTTGGGGTCCATGTTTTATCATTGAAGAGAGAATGTAGAAGTCATATATATAATTCTCTTCCCTTTTTACGTTTTAAGTTCACAAAAGCTCATATTAAGTACCCCAAATTTATATCTAATGATTGATTGACTATAGTTATAGTTTGTCTCCCCTTTGTGTATGGGTTTATTCGCACCCTTTGTATTCTTTATTCTTTCAAATTTTCCCAATAAAAACGAGTTTCTCGTTAAGAAAACAGTGACATTTCTGGTTGGTTGGTTTTGTTTATGTAGAGATATATTAGCATCTGGAACTTGATCGAATTTCCATCTGTAAACTTGATTAATGGCTTCAATTATTTTATCTTTCTCATTTAAATATTGAAACATTAGGAGATCCTTAGAACAAACTAGAATTAAAAAAATTGAACCACTTGATACAGATCAAAATTCTCGGAAACTGTCCAGAGGATCTTGAGGATGTGGTTAGGAAATTGGAGGAATCAACTGGCTCTGTGGTGGTGAATCAGATTGGCAGAACTGTTATTATTTATAGGCCCAGCATCACCAAAATGAAAGCTGAGGAAGAAAAACGACGTTCCCGAAAAATTTATATTAGGAAAGAGCCTGATCGAGTCAAATCCATTTTGCAGGTAAAGTAAATGCATTGATATTCTTGATCTTGTCCCCCAAAAAGTTTAATATTCGATTGCAAGTTCCATGAAAATCATCCGAGTTAACCTTCAAATGTTTTCATCTTTGACAACTAATATCCTTTTGGAGAACTTGTTAAAATAATTTTTCTCGGTCCTTCCTAGCTGAGATCGACCCAGAGATACGAGTAAATATTTAATATAGTTTCATTGTACATATTTTGGACTTTCTTGGTGAAATCTCAGCCTAATGAAGACCAAGCATGTGTGTAATATTTCCCAAGTTCGAATCTCAGACTGGGAAGGACAAAAGAAACTATTACAACCAATTGCTAAAAAGAGTGTTGGTTGTGAAAGATGAAATCTTTTAGAGGCTATGTTTGTCAATTTCCCAAGTTCCCCCTTAAATTTGAATACTTGTATTTCTGCAGAAGAAAGTAGAAACACCTCGAAGTTCAAACCGTGGTCGTCGTGGAACCAGCAGGTATATTAATCTGGAGTAGGATTCACATCTAGCAAGTTTATTTTGGAGGAACAAATTTTGAATTTTCATCCCAATGTAAGTTTTGTTCATCCCATTCTTGTTCTTGTAGTTCCACTAGTTTTGATTTAATTCATTAATGTTGAGATTTTTACTCTGCTTCCATTTCACAAGATTAGAGATTTAAATAAGATTATAGGGTGTGAGAGAGTAAAATTGACATAGAAAATGAGTGCCTCAAAAGATCAAAACATTGGATGTTATTAATATCTCGCAACTCCAAATGTGAGTTTAGTTCTATGAATTTATCTTTCATATGAAAAACATTTAATAGTATAATTTGGGAAAATTATGTTAAATTCTGTTGGGTTGATCATTATTGGAGAAAAAATGAAATAAAATTTACACTTGAACTTAGAAAGTTATTTGACTTTTTTTTTTTTTTTTTCCATAAACTATAATGTTG

mRNA sequence

GTTTCTTTCAGTCTGACTGAAGCCGAACCCAAAAGGGAAGCAAAAATGAGGGCTTCGATAATCTCCTCTCACTCTCACTCTCACTCTCACTCTCTCCTTCTCCGCTCAGTCCCCTCCTCCTTCTCCACCTTCTTCTCTAAACCCTCCGCCACCGCCGCCTTCTCCACAGTTTGTTTCCATCAATTTAAGCCCAGCAGTTCAACCTTCCTCACTCGCAAGTCTCCTCACTATTCCCGCCCTTTCACTCCCTCCACATCCCTTTCCTTCTCTCGCTTTTTCTCCTCCACCGTTTCCGGTCCCTCCGAGGTCAGATTTGATGAAGGTGACGATGAAATTGAAGACAAAGACGAAAGTGATTACGAAGATGAAGTTGAAATGGAAGATTCCGTTGGGGATGGAACGGAAAACGGTGTGGCTTCGGAGCTGTCTTCGCCGGTTATGAATAGAAATGAAGTGAAGAATATTCCGAGCTTGACGATTAAGGAGAAGAAGGAGCTGGCATCGTATGCTCATGGTTTGGGGAAGAAGCTGAAAAGTCAGTTGGTGGGAAAGTCTGGCGTCACTCCTGGTTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTTAAGATCAAAATTCTCGGAAACTGTCCAGAGGATCTTGAGGATGTGGTTAGGAAATTGGAGGAATCAACTGGCTCTGTGGTGGTGAATCAGATTGGCAGAACTGTTATTATTTATAGGCCCAGCATCACCAAAATGAAAGCTGAGGAAGAAAAACGACGTTCCCGAAAAATTTATATTAGGAAAGAGCCTGATCGAGTCAAATCCATTTTGCAGAAGAAAGTAGAAACACCTCGAAGTTCAAACCGTGGTCGTCGTGGAACCAGCAGGTATATTAATCTGGAGTAGGATTCACATCTAGCAAGTTTATTTTGGAGGAACAAATTTTGAATTTTCATCCCAATGTAAGTTTTGTTCATCCCATTCTTGTTCTTGTAGTTCCACTAGTTTTGATTTAATTCATTAATGTTGAGATTTTTACTCTGCTTCCATTTCACAAGATTAGAGATTTAAATAAGATTATAGGGTGTGAGAGAGTAAAATTGACATAGAAAATGAGTGCCTCAAAAGATCAAAACATTGGATGTTATTAATATCTCGCAACTCCAAATGTGAGTTTAGTTCTATGAATTTATCTTTCATATGAAAAACATTTAATAGTATAATTTGGGAAAATTATGTTAAATTCTGTTGGGTTGATCATTATTGGAGAAAAAATGAAATAAAATTTACACTTGAACTTAGAAAGTTATTTGACTTTTTTTTTTTTTTTTTCCATAAACTATAATGTTG

Coding sequence (CDS)

ATGAGGGCTTCGATAATCTCCTCTCACTCTCACTCTCACTCTCACTCTCTCCTTCTCCGCTCAGTCCCCTCCTCCTTCTCCACCTTCTTCTCTAAACCCTCCGCCACCGCCGCCTTCTCCACAGTTTGTTTCCATCAATTTAAGCCCAGCAGTTCAACCTTCCTCACTCGCAAGTCTCCTCACTATTCCCGCCCTTTCACTCCCTCCACATCCCTTTCCTTCTCTCGCTTTTTCTCCTCCACCGTTTCCGGTCCCTCCGAGGTCAGATTTGATGAAGGTGACGATGAAATTGAAGACAAAGACGAAAGTGATTACGAAGATGAAGTTGAAATGGAAGATTCCGTTGGGGATGGAACGGAAAACGGTGTGGCTTCGGAGCTGTCTTCGCCGGTTATGAATAGAAATGAAGTGAAGAATATTCCGAGCTTGACGATTAAGGAGAAGAAGGAGCTGGCATCGTATGCTCATGGTTTGGGGAAGAAGCTGAAAAGTCAGTTGGTGGGAAAGTCTGGCGTCACTCCTGGTTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTTAAGATCAAAATTCTCGGAAACTGTCCAGAGGATCTTGAGGATGTGGTTAGGAAATTGGAGGAATCAACTGGCTCTGTGGTGGTGAATCAGATTGGCAGAACTGTTATTATTTATAGGCCCAGCATCACCAAAATGAAAGCTGAGGAAGAAAAACGACGTTCCCGAAAAATTTATATTAGGAAAGAGCCTGATCGAGTCAAATCCATTTTGCAGAAGAAAGTAGAAACACCTCGAAGTTCAAACCGTGGTCGTCGTGGAACCAGCAGGTATATTAATCTGGAGTAG

Protein sequence

MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSPHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE

Homology

[Close]

BLAST of Cmc01g0019171.1 vs. NCBI nr
Match: XP_008448058.1 (PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo])

HSP 1 Score: 525.8 bits (1353), Expect = 2.3e-145
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP 60
           MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP
Sbjct: 1   MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP 60

Query: 61  HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGDGTE 120
           HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGDGTE
Sbjct: 61  HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGDGTE 120

Query: 121 NGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF 180
           NGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF
Sbjct: 121 NGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF 180

Query: 181 IETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEE 240
           IETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEE
Sbjct: 181 IETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEE 240

Query: 241 KRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE 285
           KRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE
Sbjct: 241 KRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE 284

[Close]

BLAST of Cmc01g0019171.1 vs. NCBI nr
Match: XP_004148536.1 (uncharacterized protein LOC101213060 [Cucumis sativus] >KGN43169.1 hypothetical protein Csa_020174 [Cucumis sativus])

HSP 1 Score: 460.7 bits (1184), Expect = 9.2e-126
Identity = 252/283 (89.05%), Postives = 264/283 (93.29%), Query Frame = 0


Query: 1   MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP 60
           M ASIIS    SHSHSLLLRS+PSSFSTFFSKPSA AA STVCFHQFKPSSST LTR+SP
Sbjct: 1   MGASIIS----SHSHSLLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRESP 60

Query: 61  HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGDGTE 120
           H+ RPFTPS  LSFSR FSST+S PSEV FDE DDEIEDKDESDYEDEVEMED VGDGTE
Sbjct: 61  HHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMEDEVGDGTE 120

Query: 121 NGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF 180
            GVASELSSP+M+RNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF
Sbjct: 121 TGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF 180

Query: 181 IETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEE 240
           IETLEANELLKIKILGNCPE+LEDVVRKL ESTGSVVVNQIGRTVIIYRPSITKMKAEEE
Sbjct: 181 IETLEANELLKIKILGNCPEELEDVVRKLAESTGSVVVNQIGRTVIIYRPSITKMKAEEE 240

Query: 241 KRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINL 284
           KRR+RK+Y+RKEPDRVKSILQKK+ETP+SSNRGRRGTSR INL
Sbjct: 241 KRRARKVYMRKEPDRVKSILQKKIETPQSSNRGRRGTSRQINL 279

[Close]

BLAST of Cmc01g0019171.1 vs. NCBI nr
Match: XP_038888218.1 (uncharacterized protein LOC120078082 [Benincasa hispida])

HSP 1 Score: 412.1 bits (1058), Expect = 3.8e-111
Identity = 231/282 (81.91%), Postives = 252/282 (89.36%), Query Frame = 0


Query: 1   MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP 60
           M ASIIS     HSHSLLLRSVPSSFSTFFSKPSA AA + VCF+QFKP SS F TR+S 
Sbjct: 1   MGASIIS----FHSHSLLLRSVPSSFSTFFSKPSAAAAAAAVCFNQFKPVSSNFFTRESS 60

Query: 61  HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEM--EDSVGDG 120
           H+SR F PS SLSF R F+ST+SGPSE RFDE DDEIED+DESDYEDEVE+  E++V DG
Sbjct: 61  HHSRSFIPSPSLSFPRSFASTISGPSEFRFDEDDDEIEDEDESDYEDEVEIEREEAVEDG 120

Query: 121 TENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLAT 180
            E GVASELSS ++NRNEVKNIPSLTIKEKKELASYAH LGKKLKSQLVGKSGVTPGLAT
Sbjct: 121 METGVASELSSLMVNRNEVKNIPSLTIKEKKELASYAHSLGKKLKSQLVGKSGVTPGLAT 180

Query: 181 SFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAE 240
           SFIETLEANELLKIKILGNCPE+LED VRKLEESTGSVVVNQIGRTVIIYRPSITKMKAE
Sbjct: 181 SFIETLEANELLKIKILGNCPEELEDAVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAE 240

Query: 241 EEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRY 281
           ++KR++RKIY+RKE DRVKSILQ K++TPRSSNRGRRG+SRY
Sbjct: 241 KQKRQARKIYVRKELDRVKSILQNKIQTPRSSNRGRRGSSRY 278

[Close]

BLAST of Cmc01g0019171.1 vs. NCBI nr
Match: XP_022971306.1 (uncharacterized protein LOC111470060 [Cucurbita maxima])

HSP 1 Score: 372.5 bits (955), Expect = 3.3e-99
Identity = 216/287 (75.26%), Postives = 242/287 (84.32%), Query Frame = 0


Query: 1   MRASIISSHSHSH-SHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKS 60
           M ASI+SS SHSH  HSLLLRSVPSS STF  +PS  A  S  C HQFKP+SS FL R+S
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPS--AVISAACSHQFKPNSSIFLIRQS 60

Query: 61  PHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMED------ 120
           PH SR FTPS S+SFSR FSS +SG S V F E DD I+D DESDYEDEVE+ED      
Sbjct: 61  PHRSRSFTPSASVSFSRSFSSIISGTSAVGF-EDDDVIDDDDESDYEDEVEIEDFELEDN 120

Query: 121 SVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180
           +V DG E  VAS+ SS V++R+EVK+IPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 TVEDGLETAVASDSSSAVVSRSEVKSIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSIT 240
           PGLATSFIETLEANELLKIK+LGNCP +LEDVVR+LEESTGSVVV++IGRTVIIYRPSI+
Sbjct: 181 PGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSIS 240

Query: 241 KMKAEEEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRY 281
           KMKAEEEKRR+RKIY+RKEPDRVK  LQ KV+TPRSSNRGRRG+SR+
Sbjct: 241 KMKAEEEKRRARKIYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284

[Close]

BLAST of Cmc01g0019171.1 vs. NCBI nr
Match: XP_023529380.1 (uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 371.3 bits (952), Expect = 7.4e-99
Identity = 216/293 (73.72%), Postives = 244/293 (83.28%), Query Frame = 0


Query: 1   MRASIISSHSHSH-SHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKS 60
           M ASI+SS SHSH  HSLLLRSVPSS STF S+PS  AA S  C HQFKP+SS FL R+S
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSRPS--AAISAACSHQFKPNSSIFLIRQS 60

Query: 61  PHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMED------ 120
           PH SR F+PS S+SFSR FSST+S  S V F E DD I+D DESDYEDEVE+ED      
Sbjct: 61  PHRSRSFSPSASVSFSRSFSSTISDTSAVGF-EDDDVIDDDDESDYEDEVEIEDEVEIED 120

Query: 121 ------SVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLV 180
                 +V DG E  VAS+ SS V++R+EVKNIPSLT+KEKKELASYAH LGKKLKSQLV
Sbjct: 121 FELEDNTVEDGLETAVASDSSSAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLV 180

Query: 181 GKSGVTPGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVII 240
           GKSGVTPGLATSFIETLEANELLKIK+LGNCP +LEDVV++LEESTGSVVV++IGRTVII
Sbjct: 181 GKSGVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEESTGSVVVSKIGRTVII 240

Query: 241 YRPSITKMKAEEEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRY 281
           YRPSI+KMKAEEEKRR+RK+Y+RKEPDRVK  LQ KV+TPRSSNRGRRG+SR+
Sbjct: 241 YRPSISKMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 290

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy Swiss-Prot
Match: P54454 (Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) OX=224308 GN=yqeI PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-09
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 143 LTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEDL 202
           LT K+K+ L S AH L    +   VGK GV   +     E LEA EL+K+ +L NC ED 
Sbjct: 2   LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDK 61

Query: 203 EDVVRKLEESTGSVVVNQIGRTVIIYRPS 232
            DV   L + + S +V  IG T+++Y+ S
Sbjct: 62  NDVAEALVKGSRSQLVQTIGNTIVLYKES 87

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy Swiss-Prot
Match: P0AGK6 (RNA-binding protein YhbY OS=Escherichia coli O157:H7 OX=83334 GN=yhbY PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-06
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 142 SLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPED 201
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+KI     E 
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 202 LEDVVRKLEESTGSVVVNQIGRTVIIYRPS 232
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy Swiss-Prot
Match: P0AGK5 (RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yhbY PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-06
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 142 SLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPED 201
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+KI     E 
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 202 LEDVVRKLEESTGSVVVNQIGRTVIIYRPS 232
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy Swiss-Prot
Match: P0AGK4 (RNA-binding protein YhbY OS=Escherichia coli (strain K12) OX=83333 GN=yhbY PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-06
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 142 SLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPED 201
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+KI     E 
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 202 LEDVVRKLEESTGSVVVNQIGRTVIIYRPS 232
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy Swiss-Prot
Match: P0AGK7 (RNA-binding protein YhbY OS=Shigella flexneri OX=623 GN=yhbY PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-06
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 142 SLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPED 201
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+KI     E 
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 202 LEDVVRKLEESTGSVVVNQIGRTVIIYRPS 232
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy TrEMBL
Match: A0A1S3BJF7 (uncharacterized protein LOC103490350 OS=Cucumis melo OX=3656 GN=LOC103490350 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.1e-145
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP 60
           MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP
Sbjct: 1   MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP 60

Query: 61  HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGDGTE 120
           HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGDGTE
Sbjct: 61  HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGDGTE 120

Query: 121 NGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF 180
           NGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF
Sbjct: 121 NGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF 180

Query: 181 IETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEE 240
           IETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEE
Sbjct: 181 IETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEE 240

Query: 241 KRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE 285
           KRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE
Sbjct: 241 KRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE 284

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy TrEMBL
Match: A0A0A0K2C3 (CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G004710 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 4.5e-126
Identity = 252/283 (89.05%), Postives = 264/283 (93.29%), Query Frame = 0


Query: 1   MRASIISSHSHSHSHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP 60
           M ASIIS    SHSHSLLLRS+PSSFSTFFSKPSA AA STVCFHQFKPSSST LTR+SP
Sbjct: 1   MGASIIS----SHSHSLLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRESP 60

Query: 61  HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGDGTE 120
           H+ RPFTPS  LSFSR FSST+S PSEV FDE DDEIEDKDESDYEDEVEMED VGDGTE
Sbjct: 61  HHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMEDEVGDGTE 120

Query: 121 NGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF 180
            GVASELSSP+M+RNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF
Sbjct: 121 TGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSF 180

Query: 181 IETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEE 240
           IETLEANELLKIKILGNCPE+LEDVVRKL ESTGSVVVNQIGRTVIIYRPSITKMKAEEE
Sbjct: 181 IETLEANELLKIKILGNCPEELEDVVRKLAESTGSVVVNQIGRTVIIYRPSITKMKAEEE 240

Query: 241 KRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINL 284
           KRR+RK+Y+RKEPDRVKSILQKK+ETP+SSNRGRRGTSR INL
Sbjct: 241 KRRARKVYMRKEPDRVKSILQKKIETPQSSNRGRRGTSRQINL 279

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy TrEMBL
Match: A0A6J1I2Z3 (uncharacterized protein LOC111470060 OS=Cucurbita maxima OX=3661 GN=LOC111470060 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.6e-99
Identity = 216/287 (75.26%), Postives = 242/287 (84.32%), Query Frame = 0


Query: 1   MRASIISSHSHSH-SHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKS 60
           M ASI+SS SHSH  HSLLLRSVPSS STF  +PS  A  S  C HQFKP+SS FL R+S
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPS--AVISAACSHQFKPNSSIFLIRQS 60

Query: 61  PHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMED------ 120
           PH SR FTPS S+SFSR FSS +SG S V F E DD I+D DESDYEDEVE+ED      
Sbjct: 61  PHRSRSFTPSASVSFSRSFSSIISGTSAVGF-EDDDVIDDDDESDYEDEVEIEDFELEDN 120

Query: 121 SVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180
           +V DG E  VAS+ SS V++R+EVK+IPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 TVEDGLETAVASDSSSAVVSRSEVKSIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSIT 240
           PGLATSFIETLEANELLKIK+LGNCP +LEDVVR+LEESTGSVVV++IGRTVIIYRPSI+
Sbjct: 181 PGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSIS 240

Query: 241 KMKAEEEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRY 281
           KMKAEEEKRR+RKIY+RKEPDRVK  LQ KV+TPRSSNRGRRG+SR+
Sbjct: 241 KMKAEEEKRRARKIYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy TrEMBL
Match: A0A5D3DFJ1 (Putative RNA-binding CRS1 / YhbY domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00840 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 6.3e-80
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 120 ENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATS 179
           E GVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATS
Sbjct: 2   ETGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATS 61

Query: 180 FIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEE 239
           FIETLEANELLKIKILGNCPE+LEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEE
Sbjct: 62  FIETLEANELLKIKILGNCPEELEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEE 121

Query: 240 EKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE 285
           EKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE
Sbjct: 122 EKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRYINLE 166

[Close]

BLAST of Cmc01g0019171.1 vs. ExPASy TrEMBL
Match: A0A6J1C409 (uncharacterized protein LOC111007723 OS=Momordica charantia OX=3673 GN=LOC111007723 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 136/187 (72.73%), Postives = 162/187 (86.63%), Query Frame = 0


Query: 102 ESDYEDEVEM------EDSVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYA 161
           +SDYE EV +      E+S+G  ++    S+LSS V+N +EVKN+PSLT+KEKKELASYA
Sbjct: 9   DSDYEGEVRIVDFELEEESIGGESQADAVSQLSSSVVNGSEVKNLPSLTVKEKKELASYA 68

Query: 162 HGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGS 221
           H LGKKLK+QLVGKSGVTPGLA SF+ETLEANELLKIKIL NCP +L+D VR+LEESTGS
Sbjct: 69  HSLGKKLKTQLVGKSGVTPGLAISFVETLEANELLKIKILRNCPVELDDAVRQLEESTGS 128

Query: 222 VVVNQIGRTVIIYRPSITKMKAEEEKRRSRKIYIRKEPDRVKSILQKKVETP--RSSNRG 281
           VVV+QIGRTVIIYRPSI+KMKAEE+KR++RKIY+RKEPDRVKSILQ KV+TP   +SNRG
Sbjct: 129 VVVSQIGRTVIIYRPSISKMKAEEKKRQARKIYVRKEPDRVKSILQNKVQTPGISNSNRG 188

[Close]

BLAST of Cmc01g0019171.1 vs. TAIR 10
Match: AT4G39040.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-34
Identity = 120/298 (40.27%), Postives = 162/298 (54.36%), Query Frame = 0


Query: 2   RASIISSHSHSH-SHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP 61
           R +  +S S +H  H+LL    P S    F +P   +A  +   H+ KP   +F ++  P
Sbjct: 3   RVTASASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSNHRNKPRFQSFSSKPLP 62

Query: 62  HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGD--- 121
            +      S SL    F  S++  P     +E +DE    +E +YEDE E ++       
Sbjct: 63  CH------SASLVVKSF--SSIDEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQDSGVVV 122

Query: 122 ---GTENGVASELSSPVMNRNEVK----------NIPSLTIKEKKELASYAHGLGKKLKS 181
              G E+  ASE  S + ++ E            +   L+IKEKKELASYAH LG KLK 
Sbjct: 123 SERGIEDSEASEEVSEIGDKEEKTENTKKKKSRGSALKLSIKEKKELASYAHSLGDKLKC 182

Query: 182 QLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRT 241
           QLVGKSGVT  +  SF+ETLE NELLK+KI    P++LED V+ LEE+TGSV V QIGRT
Sbjct: 183 QLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDELEDAVQHLEEATGSVAVGQIGRT 242

Query: 242 VIIYRPSITKMKAEEEKRRSRKIYIRKEPDRVKSILQK---KVETPRSSNRGRRGTSR 280
           VI+YRPS TKMKAE +K+   ++ I +      +   K   +  + R   RGRRG SR
Sbjct: 243 VILYRPSPTKMKAEAKKKEVERMSITRRQKYANTRPTKPFRREYSERPDGRGRRGGSR 292

[Close]

BLAST of Cmc01g0019171.1 vs. TAIR 10
Match: AT4G39040.2 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-33
Identity = 111/267 (41.57%), Postives = 150/267 (56.18%), Query Frame = 0


Query: 2   RASIISSHSHSH-SHSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKSP 61
           R +  +S S +H  H+LL    P S    F +P   +A  +   H+ KP   +F ++  P
Sbjct: 3   RVTASASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQSNHRNKPRFQSFSSKPLP 62

Query: 62  HYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMEDSVGD--- 121
            +      S SL    F  S++  P     +E +DE    +E +YEDE E ++       
Sbjct: 63  CH------SASLVVKSF--SSIDEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQDSGVVV 122

Query: 122 ---GTENGVASELSSPVMNRNEVK----------NIPSLTIKEKKELASYAHGLGKKLKS 181
              G E+  ASE  S + ++ E            +   L+IKEKKELASYAH LG KLK 
Sbjct: 123 SERGIEDSEASEEVSEIGDKEEKTENTKKKKSRGSALKLSIKEKKELASYAHSLGDKLKC 182

Query: 182 QLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRT 241
           QLVGKSGVT  +  SF+ETLE NELLK+KI    P++LED V+ LEE+TGSV V QIGRT
Sbjct: 183 QLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDELEDAVQHLEEATGSVAVGQIGRT 242

Query: 242 VIIYRPSITKMKAEEEKRRSRKIYIRK 252
           VI+YRPS TKMKAE +K+   ++ I +
Sbjct: 243 VILYRPSPTKMKAEAKKKEVERMSITR 261

[Close]

BLAST of Cmc01g0019171.1 vs. TAIR 10
Match: AT2G21350.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-33
Identity = 98/216 (45.37%), Postives = 130/216 (60.19%), Query Frame = 0


Query: 40  STVCFHQFKPSSSTFLTRKSPHYS---------RPFTPSTSLSFSRFFSSTVSGPSEVRF 99
           S VC    +P S + L RKS H++         RP+   + L   + FSS          
Sbjct: 24  SPVCLF-LRPFSVSLLGRKSSHHAWISSSLPLPRPYISFSPLLVPKSFSSV--------- 83

Query: 100 DEGDDEIEDKDESDYEDEVEMEDSVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKE 159
               DE E +DE +      + +   DG E+G  SEL+   M  N   +   L+ KEK++
Sbjct: 84  ----DESE-QDEDNVSLVASLNEINDDGQEDG--SELTMVSMRENRRSSALELSAKEKRK 143

Query: 160 LASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLE 219
           LASYAH LG KLKSQLVGKSGVT  +  SF+ETLE NELLK+KI   CP +LED++ +LE
Sbjct: 144 LASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEKNELLKVKIHRTCPGELEDMILRLE 203

Query: 220 ESTGSVVVNQIGRTVIIYRPSITKMKAEEEKRRSRK 247
           E+TGSV V QI RTVI+YRPS TK+KA+E+K+R+ +
Sbjct: 204 EATGSVSVGQIARTVILYRPSPTKLKADEDKKRNEE 222

The following BLAST results are available for this feature:

BLAST of Cmc01g0019171.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448058.1	2.3e-145	100.00	PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo]	[more]
XP_004148536.1	9.2e-126	89.05	uncharacterized protein LOC101213060 [Cucumis sativus] >KGN43169.1 hypothetical ...	[more]
XP_038888218.1	3.8e-111	81.91	uncharacterized protein LOC120078082 [Benincasa hispida]	[more]
XP_022971306.1	3.3e-99	75.26	uncharacterized protein LOC111470060 [Cucurbita maxima]	[more]
XP_023529380.1	7.4e-99	73.72	uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc01g0019171.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P54454	3.3e-09	40.45	Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) OX=224308 GN...	[more]
P0AGK6	4.5e-06	33.33	RNA-binding protein YhbY OS=Escherichia coli O157:H7 OX=83334 GN=yhbY PE=4 SV=1	[more]
P0AGK5	4.5e-06	33.33	RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ...	[more]
P0AGK4	4.5e-06	33.33	RNA-binding protein YhbY OS=Escherichia coli (strain K12) OX=83333 GN=yhbY PE=1 ...	[more]
P0AGK7	4.5e-06	33.33	RNA-binding protein YhbY OS=Shigella flexneri OX=623 GN=yhbY PE=4 SV=1	[more]

BLAST of Cmc01g0019171.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BJF7	1.1e-145	100.00	uncharacterized protein LOC103490350 OS=Cucumis melo OX=3656 GN=LOC103490350 PE=...	[more]
A0A0A0K2C3	4.5e-126	89.05	CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G004710 PE=4 SV...	[more]
A0A6J1I2Z3	1.6e-99	75.26	uncharacterized protein LOC111470060 OS=Cucurbita maxima OX=3661 GN=LOC111470060...	[more]
A0A5D3DFJ1	6.3e-80	98.79	Putative RNA-binding CRS1 / YhbY domain protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1C409	1.6e-62	72.73	uncharacterized protein LOC111007723 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Cmc01g0019171.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39040.1	2.3e-34	40.27	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT4G39040.2	2.0e-33	41.57	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT2G21350.1	3.4e-33	45.37	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 143..229 e-value: 3.9E-24 score: 96.2
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 143..229 e-value: 7.8E-16 score: 58.0
IPR001890	RNA-binding, CRM domain	PROSITE	PS51295	CRM	coord: 141..240 score: 17.407467
IPR035920	YhbY-like superfamily	GENE3D	3.30.110.60		coord: 142..241 e-value: 1.5E-27 score: 97.4
IPR035920	YhbY-like superfamily	SUPERFAMILY	75471	YhbY-like	coord: 142..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..284
None	No IPR available	PANTHER	PTHR47714	CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 6..279
None	No IPR available	PANTHER	PTHR47714:SF1	CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 6..279

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc01g0019171	Cmc01g0019171	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0019171.1-exon	Cmc01g0019171.1-exon-CMiso1.1chr01:16834353..16834868	exon
Cmc01g0019171.1-exon	Cmc01g0019171.1-exon-CMiso1.1chr01:16835300..16835509	exon
Cmc01g0019171.1-exon	Cmc01g0019171.1-exon-CMiso1.1chr01:16836885..16837502	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0019171.1-three_prime_utr	Cmc01g0019171.1-three_prime_utr-CMiso1.1chr01:16834353..16834796	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0019171.1-cds	Cmc01g0019171.1-cds-CMiso1.1chr01:16834797..16834868	CDS
Cmc01g0019171.1-cds	Cmc01g0019171.1-cds-CMiso1.1chr01:16835300..16835509	CDS
Cmc01g0019171.1-cds	Cmc01g0019171.1-cds-CMiso1.1chr01:16836885..16837457	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0019171.1-five_prime_utr	Cmc01g0019171.1-five_prime_utr-CMiso1.1chr01:16837458..16837502	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc01g0019171.1	Cmc01g0019171.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding