Cmc01g0004861.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc01g0004861.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr01: 1250713 .. 1252540 (+)
Sequence length	1694
RNA-Seq Expression	Cmc01g0004861.1
Synteny	Cmc01g0004861.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGCACCGAACATGGCAGGCATCTTTACGGTACACGTACAAGATGTCCCTTCGCGCGCTTGAGCCTCGTCCCCATGAGGCAAATCTGTGGCAGCCATGGATGGGTTGGCGATGAACTGAATCGGAGGGAGTAAATGCCATATGCAATACTAGGGGATTCTGTACCGTTCTCTCTTCCAATTCTCTACACTTTCAGTCATGGTTGGGCAATTGGTAAAGGGAGTAATATTGGATGATTCTGTACTATTTATCAATTCTAATGCCCATAATCCCAACCATTCACTACGACCCAATTCCGATAATCTCCTCCGCCACCTCCGCTATTCCATGTTTCGAACGGTATCTCCCATTTTCCCTCTGCATGCGTGATTTTATCTGGAATCATGTTTGGTTTTTTTTTGGTTTTTTTTTTTGTAAAGTTTGAGTATACAAGTGGGGTTGATGTTCTTCATTTTCCTTATTGTGGTATATAGACACACTTCCCATTTGGCCGTAACTCATGAAATTGAGGATGCTAAGGAAAGAAGACAAATTTAGAATTAATGTTAAACTATTCAGTGTTTTCTCAATACTCTGCGAATCATATATTCATTTGGTTCATACCATGGAAGATATACATTATTTTAAAGTGTAAAGCTGATAGATTGGTGTAGCTGGCTTGCTTGTCTAGAAGGGACAAAAGGAAGTGATAGAGGAAGAATTGTTTTGTAATTTGTACAAACCCTACCCCATCAAATGACCATAGCATTCCCGCGTCATTACCCCTACCTTCAAGAAAAATTGACCTTCAACTGATAACGTCAGCAGTTATTGTCCGATCAAGTCGGTGATCTTCGGCACCAGCCCGTTGATAAAAATTGGGGTGTTTGCTGGGGGAACCTAGTTCGATGTTTAACTGGTGATAAACTGAAGCAATGAGATGAGATTTTGTCTTGGCTTTGGCAGAATTTGCATTTAATCACATGACAAATCAATCAACAGGGAAGTCACCATTTGAGATAGTTTACACTCCAACAAATTACTTTTTTTCTAATAATGATCGCAGTGTTGAAGCAAATCATAACACTTTTAACTTATCTAACCTTCCTTCTAATACTGATCTTAGTGTTGAAGCAGATCATGTGACCAAGTAGGATGAAGGAAATTCATGAAGAAGTTTGCTCCCATCTCAAGGAATCCAATGCTTAGTAGAATCAGGATGTCAATGCTCACGTAAAGCTTAGACTTTTAATGTTGGTGATGATCTAGTCATAGCCCATTTGAGGAAATCAAGACAACGCCAGACACCATACCAAGATGACTAGTAAAAAGATTTAGCTCATTTCAGATTTTGGGCTGCCTACAAACTTGACTTTCCCCCTTCTTTGCGCATTACTCCATCATTTAACGTTTCAGACCTCTTTGATCATCATTGACAACTTTTCCTTGGCTGACTAATCTCATGGTCTAGTTTTCCTTTGGGGGAAAGGATTTGATGTAGGATCATCTTGATGTTCTTGACTTCTCTTGACTCTTCTTGTATTACTTCTTGATTTTTTTTTTATCTTTATCTAGTAGCTTCGTTTCTTTAAATTCTCGGTCAAGTTCTTGTATCTATGGTGGTTGGGGTCTAATTTACTAACCATCCACCTTCTCAACGAGTTATATCCTTGTATTCTGCCATGTCTATAAATATGGCAGTCTCTTGTACTTTTGGGCATTATTGAATAAAACTTGAGGTATTATTTTTACTTCTTCACTTCACTAACTAGACCACTAACCTTAAAAATTTCTCTGGGCAAGATCACTAAGCCATTAACCACCTTAAATACGTCAATTTATAATAAGC

mRNA sequence

AGTGCACCGAACATGGCAGGCATCTTTACGGTACACGTACAAGATGTCCCTTCGCGCGCTTGAGCCTCGTCCCCATGAGGCAAATCTGTGGCAGCCATGGATGGGTTGGCGATGAACTGAATCGGAGGGAGTAAATGCCATATGCAATACTAGGGGATTCTGTACCGTTCTCTCTTCCAATTCTCTACACTTTCAGTCATGGTTGGGCAATTGGTAAAGGGAGTAATATTGGATGATTCTGTACTATTTATCAATTCTAATGCCCATAATCCCAACCATTCACTACGACCCAATTCCGATAATCTCCTCCGCCACCTCCGCTATTCCATGTTTCGAACGACACACTTCCCATTTGGCCGTAACTCATGAAATTGAGGATGCTAAGGAAAGAAGACAAATTTAGAATTAATGTTAAACTATTCAGTGTTTTCTCAATACTCTGCGAATCATATATTCATTTGGTTCATACCATGGAAGATATACATTATTTTAAAGTGTAAAGCTGATAGATTGGTGTAGCTGGCTTGCTTGTCTAGAAGGGACAAAAGGAAGTGATAGAGGAAGAATTGTTTTGTAATTTGTACAAACCCTACCCCATCAAATGACCATAGCATTCCCGCGTCATTACCCCTACCTTCAAGAAAAATTGACCTTCAACTGATAACGTCAGCAGTTATTGTCCGATCAAGTCGGTGATCTTCGGCACCAGCCCGTTGATAAAAATTGGGGTGTTTGCTGGGGGAACCTAGTTCGATGTTTAACTGGTGATAAACTGAAGCAATGAGATGAGATTTTGTCTTGGCTTTGGCAGAATTTGCATTTAATCACATGACAAATCAATCAACAGGGAAGTCACCATTTGAGATAGTTTACACTCCAACAAATTACTTTTTTTCTAATAATGATCGCAGTGTTGAAGCAAATCATAACACTTTTAACTTATCTAACCTTCCTTCTAATACTGATCTTAGTGTTGAAGCAGATCATGTGACCAAGTAGGATGAAGGAAATTCATGAAGAAGTTTGCTCCCATCTCAAGGAATCCAATGCTTAGTAGAATCAGGATGTCAATGCTCACGTAAAGCTTAGACTTTTAATGTTGGTGATGATCTAGTCATAGCCCATTTGAGGAAATCAAGACAACGCCAGACACCATACCAAGATGACTAGTAAAAAGATTTAGCTCATTTCAGATTTTGGGCTGCCTACAAACTTGACTTTCCCCCTTCTTTGCGCATTACTCCATCATTTAACGTTTCAGACCTCTTTGATCATCATTGACAACTTTTCCTTGGCTGACTAATCTCATGGTCTAGTTTTCCTTTGGGGGAAAGGATTTGATGTAGGATCATCTTGATGTTCTTGACTTCTCTTGACTCTTCTTGTATTACTTCTTGATTTTTTTTTTATCTTTATCTAGTAGCTTCGTTTCTTTAAATTCTCGGTCAAGTTCTTGTATCTATGGTGGTTGGGGTCTAATTTACTAACCATCCACCTTCTCAACGAGTTATATCCTTGTATTCTGCCATGTCTATAAATATGGCAGTCTCTTGTACTTTTGGGCATTATTGAATAAAACTTGAGGTATTATTTTTACTTCTTCACTTCACTAACTAGACCACTAACCTTAAAAATTTCTCTGGGCAAGATCACTAAGCCATTAACCACCTTAAATACGTCAATTTATAATAAGC

Coding sequence (CDS)

ATGACAAATCAATCAACAGGGAAGTCACCATTTGAGATAGTTTACACTCCAACAAATTACTTTTTTTCTAATAATGATCGCAGTGTTGAAGCAAATCATAACACTTTTAACTTATCTAACCTTCCTTCTAATACTGATCTTAGTGTTGAAGCAGATCATGTGACCAAGTAG

Protein sequence

MTNQSTGKSPFEIVYTPTNYFFSNNDRSVEANHNTFNLSNLPSNTDLSVEADHVTK

Homology

The following BLAST results are available for this feature:

BLAST of Cmc01g0004861.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc01g0004861.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc01g0004861.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc01g0004861.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..56

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc01g0004861	Cmc01g0004861	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004861.1-exon	Cmc01g0004861.1-exon-CMiso1.1chr01:1250713..1251051	exon
Cmc01g0004861.1-exon	Cmc01g0004861.1-exon-CMiso1.1chr01:1251186..1252540	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004861.1-five_prime_utr	Cmc01g0004861.1-five_prime_utr-CMiso1.1chr01:1250713..1251051	five_prime_UTR
Cmc01g0004861.1-five_prime_utr	Cmc01g0004861.1-five_prime_utr-CMiso1.1chr01:1251186..1251674	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004861.1-cds	Cmc01g0004861.1-cds-CMiso1.1chr01:1251675..1251845	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004861.1-three_prime_utr	Cmc01g0004861.1-three_prime_utr-CMiso1.1chr01:1251846..1252540	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004861.1	Cmc01g0004861.1-protein	polypeptide