Cmc01g0004691.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc01g0004691.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	CYSTM domain-containing protein
Location	CMiso1.1chr01: 1150860 .. 1151856 (-)
Sequence length	684
RNA-Seq Expression	Cmc01g0004691.1
Synteny	Cmc01g0004691.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCATATTTAAACTACTGATCTCCCTTACCTTCTTCTTCAATACAACTAGAATCTTCCCTTTCATAAAGTTTCTTCTGTTCACATATCTCTCTTTGAGAATCCCAGAAACTAATTAATACCCCATTGAAGAAACAAAGATAAAGTAGAAAAAAAGGAAAAAAAGTACCGTAGTTTCTTGAGTTTTCTCATCAAGTATTGTGATTTAAATACCCTTGTTGTTCTTTCTCTTCTTCTTCGTCTTTTGGCTTGTTAGCTTCTGTTGGATAGAAGATATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGTATATATGTTGAGCTATGTTATGGTAATTTCGTTGTTACGTTTTTGTTTGATTTAGTAATTTGGGGTGGTGTGGATTTGTTTGCAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGGTTTCTTGGAGGGATGGTATGCCAAAAAGCTTCTTCTTTTTGTTCATAAACTCCCTCTTTAATAGTTTTGCTTTTGCTTGCATATATCAAAACTGAAGGTTTAAATTGAGAGTGTTAGGATAATCAAAGGAAAAAACATATCGAAGTGACGAGAACGTCTATCAAGTTTGAACTACATCTTAGGTTTGGATTCCCTGTTCGTTTAGTGTGGCTTAACAGAGGGTTTAATTTTGTGTTTGCAGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGATTTCTTCATTGCCTTTGTAGCTGTAAATTGCCTGATCTCTTTTCTCTTTTCTTTTCTTCTTTTGTGATTGTGGTTTGATTTTGTGTAAACTTGGGAAAGAACATTGATTGGTGTGTAGAATAAAAGCTTGCTTTGTTGTAAAGTATAGTGTTTATATACTCATTTGATAATAAATTTACTGATCATTACCTA

mRNA sequence

TTTCTCATATTTAAACTACTGATCTCCCTTACCTTCTTCTTCAATACAACTAGAATCTTCCCTTTCATAAAGTTTCTTCTGTTCACATATCTCTCTTTGAGAATCCCAGAAACTAATTAATACCCCATTGAAGAAACAAAGATAAAGTAGAAAAAAAGGAAAAAAAGTACCGTAGTTTCTTGAGTTTTCTCATCAAGTATTGTGATTTAAATACCCTTGTTGTTCTTTCTCTTCTTCTTCGTCTTTTGGCTTGTTAGCTTCTGTTGGATAGAAGATATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGGTTTCTTGGAGGGATGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGATTTCTTCATTGCCTTTGTAGCTGTAAATTGCCTGATCTCTTTTCTCTTTTCTTTTCTTCTTTTGTGATTGTGGTTTGATTTTGTGTAAACTTGGGAAAGAACATTGATTGGTGTGTAGAATAAAAGCTTGCTTTGTTGTAAAGTATAGTGTTTATATACTCATTTGATAATAAATTTACTGATCATTACCTA

Coding sequence (CDS)

ATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGGTTTCTTGGAGGGATGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGA

Protein sequence

MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCDPSIIFLT

Homology

[Close]

BLAST of Cmc01g0004691.1 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 6.5e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYPPP GGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD
Sbjct: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60

Query: 61 PSIIFLT 68
          PSI+ +T
Sbjct: 61 PSILLVT 67

[Close]

BLAST of Cmc01g0004691.1 vs. NCBI nr
Match: KAF9609677.1 (hypothetical protein IFM89_017856 [Coptis chinensis])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          M+DPKYAYPYP P  GYYQGPPVMAPPQYAAPPP+RQPGFLEGCLAALCCCCLLDECCCD
Sbjct: 1  MNDPKYAYPYPYPAQGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLLDECCCD 60

Query: 61 PSIIFL 67
          PSIIF+
Sbjct: 61 PSIIFV 66

[Close]

BLAST of Cmc01g0004691.1 vs. NCBI nr
Match: PQP99874.1 (uncharacterized protein Pyn_05607 [Prunus yedoensis var. nudiflora] >PQQ01249.1 uncharacterized protein Pyn_09821 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 127.1 bits (318), Expect = 5.7e-26
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MSDPKYAYPYPPP-QGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCC 60
          MSDPKY YPYP   QGGYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCL+DECCC
Sbjct: 1  MSDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCC 60

Query: 61 DPSIIF 66
          DPS++F
Sbjct: 61 DPSVLF 66

[Close]

BLAST of Cmc01g0004691.1 vs. NCBI nr
Match: EEF35140.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 126.7 bits (317), Expect = 7.5e-26
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+RQPGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSIIFLT 68
          PSIIF++
Sbjct: 61 PSIIFVS 65

[Close]

BLAST of Cmc01g0004691.1 vs. NCBI nr
Match: PON97107.1 (Cysteine-rich transmembrane CYSTM domain containing protein [Trema orientale])

HSP 1 Score: 126.7 bits (317), Expect = 7.5e-26
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCLLDECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLLDECCCD 60

Query: 61 PSIIFLT 68
          PSIIF++
Sbjct: 61 PSIIFIS 65

[Close]

BLAST of Cmc01g0004691.1 vs. ExPASy Swiss-Prot
Match: Q8S8M0 (Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis thaliana OX=3702 GN=WIH2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-08
Identity = 38/65 (58.46%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 4  PKYAYP---YPP---PQGGY-YQGPPVMAPPQYAAPPPKRQ----PGFLEGCLAALCCCC 58
          P   YP   YPP   PQ GY  QG P    PQY  PP  +Q    PGFLEGCLAALCCCC
Sbjct: 33 PPQGYPQQGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCC 92

[Close]

BLAST of Cmc01g0004691.1 vs. ExPASy Swiss-Prot
Match: Q9FJW3 (Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis thaliana OX=3702 GN=WIH1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-08
Identity = 37/63 (58.73%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 4  PKYAYP---YPP---PQGGYYQGPPVMA--PPQYA-APPPKRQPGFLEGCLAALCCCCLL 58
          PK  YP   YPP   P  GY QG P     PPQY+ AP  K+  G LEGCLAALCCCCLL
Sbjct: 19 PKDGYPPAGYPPAGYPPPGYAQGYPAQGYPPPQYSQAPQQKQNAGMLEGCLAALCCCCLL 78

[Close]

BLAST of Cmc01g0004691.1 vs. ExPASy Swiss-Prot
Match: Q8LCL8 (Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=At3g57160 PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-05
Identity = 36/79 (45.57%), Postives = 40/79 (50.63%), Query Frame = 0


Query: 4   PKYAYP----------YPPPQG---------GY-YQGPPVMAPPQYAAPPPKRQ-----P 58
           PK AYP          YPPPQG         GY  QG P    PQ   PP ++Q     P
Sbjct: 22  PKDAYPPPGQPYPQQGYPPPQGYPQQGYPPQGYPPQGYPEQGYPQQGYPPQQQQQQKHSP 81

[Close]

BLAST of Cmc01g0004691.1 vs. ExPASy TrEMBL
Match: A0A314Y8T5 (CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_05607 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MSDPKYAYPYPPP-QGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCC 60
          MSDPKY YPYP   QGGYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCL+DECCC
Sbjct: 1  MSDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECCC 60

Query: 61 DPSIIF 66
          DPS++F
Sbjct: 61 DPSVLF 66

[Close]

BLAST of Cmc01g0004691.1 vs. ExPASy TrEMBL
Match: B9SMJ5 (CYSTM domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0230320 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.6e-26
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+RQPGFLEGCLAALCCCCL+DECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLIDECCCD 60

Query: 61 PSIIFLT 68
          PSIIF++
Sbjct: 61 PSIIFVS 65

[Close]

BLAST of Cmc01g0004691.1 vs. ExPASy TrEMBL
Match: A0A2P5FH35 (Cysteine-rich transmembrane CYSTM domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_071570 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.6e-26
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCLLDECCCD
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLLDECCCD 60

Query: 61 PSIIFLT 68
          PSIIF++
Sbjct: 61 PSIIFIS 65

[Close]

BLAST of Cmc01g0004691.1 vs. ExPASy TrEMBL
Match: A0A540N3X6 (CYSTM domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_008668 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.6e-26
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQY-AAPPPKRQPGFLEGCLAALCCCCLLDECCC 60
          M++PKY YPYPPPQG  YQGPPVMAPPQY AAPPPKR+PGFLEGCLAALCCCCLLDECCC
Sbjct: 1  MNEPKYGYPYPPPQGP-YQGPPVMAPPQYNAAPPPKREPGFLEGCLAALCCCCLLDECCC 60

Query: 61 DPSIIFLT 68
          DPSIIFLT
Sbjct: 61 DPSIIFLT 67

[Close]

BLAST of Cmc01g0004691.1 vs. ExPASy TrEMBL
Match: A0A1U8A0R0 (uncharacterized protein LOC104595564 OS=Nelumbo nucifera OX=4432 GN=LOC104595564 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.7e-26
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCCLLDECCCD 60
           MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPP+R+PGFLEGCLAALCCCCLLDECCCD
Sbjct: 92  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCCLLDECCCD 151

Query: 61  PSIIFLT 68
           PSIIF++
Sbjct: 152 PSIIFVS 156

[Close]

BLAST of Cmc01g0004691.1 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-19
Identity = 50/74 (67.57%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQG--PPVMAPPQY--------AAPPPKRQPGFLEGCLAALCC 60
          MSDPKYAYPYP P G Y QG  PPV  PPQY          PPP R+ GFLEG LAALCC
Sbjct: 1  MSDPKYAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLAALCC 60

Query: 61 CCLLDECCCDPSII 65
          CCL+DECCCDP+II
Sbjct: 61 CCLVDECCCDPTII 73

[Close]

BLAST of Cmc01g0004691.1 vs. TAIR 10
Match: AT2G41420.1 (proline-rich family protein )

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-09
Identity = 38/65 (58.46%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 4  PKYAYP---YPP---PQGGY-YQGPPVMAPPQYAAPPPKRQ----PGFLEGCLAALCCCC 58
          P   YP   YPP   PQ GY  QG P    PQY  PP  +Q    PGFLEGCLAALCCCC
Sbjct: 33 PPQGYPQQGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCC 92

[Close]

BLAST of Cmc01g0004691.1 vs. TAIR 10
Match: AT5G67600.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49845.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 4.0e-09
Identity = 37/63 (58.73%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 4  PKYAYP---YPP---PQGGYYQGPPVMA--PPQYA-APPPKRQPGFLEGCLAALCCCCLL 58
          PK  YP   YPP   P  GY QG P     PPQY+ AP  K+  G LEGCLAALCCCCLL
Sbjct: 19 PKDGYPPAGYPPAGYPPPGYAQGYPAQGYPPPQYSQAPQQKQNAGMLEGCLAALCCCCLL 78

[Close]

BLAST of Cmc01g0004691.1 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 35/86 (40.70%), Postives = 39/86 (45.35%), Query Frame = 0


Query: 4   PKYAYP---YPPPQGGY-----------------------YQGPPVMAPPQYAAPPPKRQ 58
           P+  YP   YPPPQ GY                       YQGPP   PP Y   PPK +
Sbjct: 41  PQAGYPPAGYPPPQQGYGQGYPAQGYPPPQYPQGHPPQYPYQGPP---PPHYGQAPPKNK 100

[Close]

BLAST of Cmc01g0004691.1 vs. TAIR 10
Match: AT2G32190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 218 Blast hits to 218 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.0e-05
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 7  AYPYPPPQGGYYQGPPVMAPP----QYAAPPP----KRQPGFLEGCLAALCCCCLLDEC 58
          AYP PP   G Y  PP +  P     +A   P     +  GFL+GCLAA+CCCC+LD C
Sbjct: 12 AYPTPPVSTGPYMTPPPLGYPTSDISHATVAPVETKSKGDGFLKGCLAAMCCCCVLDAC 70

The following BLAST results are available for this feature:

BLAST of Cmc01g0004691.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571885.1	6.5e-30	94.03	hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF9609677.1	1.8e-27	90.91	hypothetical protein IFM89_017856 [Coptis chinensis]	[more]
PQP99874.1	5.7e-26	86.36	uncharacterized protein Pyn_05607 [Prunus yedoensis var. nudiflora] >PQQ01249.1 ...	[more]
EEF35140.1	7.5e-26	88.06	conserved hypothetical protein [Ricinus communis]	[more]
PON97107.1	7.5e-26	88.06	Cysteine-rich transmembrane CYSTM domain containing protein [Trema orientale]	[more]

BLAST of Cmc01g0004691.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8M0	4.3e-08	58.46	Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis th...	[more]
Q9FJW3	5.6e-08	58.73	Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis th...	[more]
Q8LCL8	4.4e-05	45.57	Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thali...	[more]

BLAST of Cmc01g0004691.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A314Y8T5	2.8e-26	86.36	CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN...	[more]
B9SMJ5	3.6e-26	88.06	CYSTM domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0230320 PE=3...	[more]
A0A2P5FH35	3.6e-26	88.06	Cysteine-rich transmembrane CYSTM domain containing protein OS=Trema orientale O...	[more]
A0A540N3X6	3.6e-26	89.71	CYSTM domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_008668 PE=3 ...	[more]
A0A1U8A0R0	4.7e-26	88.06	uncharacterized protein LOC104595564 OS=Nelumbo nucifera OX=4432 GN=LOC104595564...	[more]

BLAST of Cmc01g0004691.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33660.1	3.2e-19	67.57	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT2G41420.1	3.0e-09	58.46	proline-rich family protein	[more]
AT5G67600.1	4.0e-09	58.73	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;...	[more]
AT3G49845.1	2.4e-06	40.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G32190.1	2.0e-05	45.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 12..58 e-value: 2.5E-15 score: 56.5
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..66
None	No IPR available	PANTHER	PTHR31568:SF105	CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-LIKE	coord: 1..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc01g0004691	Cmc01g0004691	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004691.1-exon	Cmc01g0004691.1-exon-CMiso1.1chr01:1150860..1151136	exon
Cmc01g0004691.1-exon	Cmc01g0004691.1-exon-CMiso1.1chr01:1151363..1151450	exon
Cmc01g0004691.1-exon	Cmc01g0004691.1-exon-CMiso1.1chr01:1151538..1151856	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004691.1-three_prime_utr	Cmc01g0004691.1-three_prime_utr-CMiso1.1chr01:1150860..1151063	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004691.1-cds	Cmc01g0004691.1-cds-CMiso1.1chr01:1151064..1151136	CDS
Cmc01g0004691.1-cds	Cmc01g0004691.1-cds-CMiso1.1chr01:1151363..1151450	CDS
Cmc01g0004691.1-cds	Cmc01g0004691.1-cds-CMiso1.1chr01:1151538..1151580	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004691.1-five_prime_utr	Cmc01g0004691.1-five_prime_utr-CMiso1.1chr01:1151581..1151856	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc01g0004691.1	Cmc01g0004691.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005737	cytoplasm