Cmc01g0003941.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc01g0003941.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	classical arabinogalactan protein 9
Location	CMiso1.1chr01: 734963 .. 736796 (-)
Sequence length	1079
RNA-Seq Expression	Cmc01g0003941.1
Synteny	Cmc01g0003941.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATAAAGAAAAATGTATGTAAATTACCTAAAATGTCCTCCATCTCCTAAATGCTCTCTATACTCTCTATTTATTCTCTCCCCTCTTTTGATTTCCCTCTCAAACGCTCATCGTCATCCTCGAACAACCAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTTTTGTTGTGTTTCACTTTCATCTCCATTGCTTTCGCCATCGCCGGAGCTCAGTCTCCCTCCAGTCCTCCCACCGCCACCCCTTCTCCTCCCACCACCTCCGCCCCTCCTCCCGCCTCTACTCCTCCCCCTGTTTCATCTCCCCCTCCAGCTGCTACTCCTCCTCCAGCATCCCCACCACCGGCGTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCCTCCCCACCACCGGCTTCTCCTCCTCCGGCATCTCCTCCACCAGCATCCCCTCCCCCAGCGATTCCACCGCCTGCACCATTGGCATCACCACCAACGGCAGTGCCAGCTCCTGCACCGAGCAAGAAGAAGGTGAAGGCAGCAGCTCCGGGTCCGGCTCCAGTTTCGAGCCCGCCAGCGCCGTCAGTGGAGGCTCCAGGACCTGCAGGCCCTGATCAATCTCCTACCCCATCTCAGAACGACAATGTAAGTTTCTCCCGCATTTTTTACATTTTTATCAAAGCTGGTTATTATTATATGAACTTAAATTGACTCTAAGTTTTGATTTTGGCGTTGCAAAACTTAGAACACACACACACACACACACATATATAATTCAATCCTCCACCAAAATCTACAAACCACATATACATTGTTGTACTTGTAGTAATCAAATGTATTTTAATTTTAATCGAAAGACATTAATACTAAAAGCAGAAAATGATTTAAGATTTATGATAATTATAATTAAATTTCGCCATTTATTATTAAAATTAATAAAATATTTACATTTTATAAATAAAATAAATAGTTTAAGTTTAAAAAATTTTGATCTTAATGATTTAAAAACATAAATATTTTGTCAATTTTTTATTTTTAAAAAATTCATTTTATTTTATAATTATTCTAATTTAATTAATAAAATTAAGAAGAAAAAAACTAAAAGTGATTATCCAATAAAGTACAAGTATAAATTTTAAAATTTAGTTACGTTGAAAATCTTAATAGTAAAATTGTGATATTTTAAGCTATAAATAATAGTTTAAAAAAATTCAAATAAGTTTTGTTTATGTAAAAAAAAACCGTACTTTTTTAATAGGATCGGAATGTATAAACTTTATAAATGAAAGATGTATAATAATGTTATTTTTCTTTCGACGATTATTTTAGATGATGTTTTTTTAGTTAGTAATTATAATTGACATGATATATTGAACGGATGAACGTTGTTGTTATTGCAGAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAGGGAGAAGAAAATTAAAGGGTTTCCTTTTGCTGTCTATGTGTTTGCCTCTTTTTTTTTTTTCTTCATTATTTCCTTTCTTCTTGGGATGGCTCTATATTTCATTTCATTTTGATTATTATTATTAATTAGCCCATGTCTTGTTTGGGACTTTTGATTTATTATTATTATTAGCCTTTTGGAGTACTCTCTCTCTCTCTCTCTAATTACCCATTTTGCTTGGGATTCTTTTGAGGCAAAAATATCTTTGTATCTACACCCTATTTAGAGGGAACCTTCTTTTATATATGTTTTCAATTTCATTATTATTTGTTCATCCATTATACCTTCT

mRNA sequence

TTTATAAAGAAAAATGTATGTAAATTACCTAAAATGTCCTCCATCTCCTAAATGCTCTCTATACTCTCTATTTATTCTCTCCCCTCTTTTGATTTCCCTCTCAAACGCTCATCGTCATCCTCGAACAACCAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTTTTGTTGTGTTTCACTTTCATCTCCATTGCTTTCGCCATCGCCGGAGCTCAGTCTCCCTCCAGTCCTCCCACCGCCACCCCTTCTCCTCCCACCACCTCCGCCCCTCCTCCCGCCTCTACTCCTCCCCCTGTTTCATCTCCCCCTCCAGCTGCTACTCCTCCTCCAGCATCCCCACCACCGGCGTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCCTCCCCACCACCGGCTTCTCCTCCTCCGGCATCTCCTCCACCAGCATCCCCTCCCCCAGCGATTCCACCGCCTGCACCATTGGCATCACCACCAACGGCAGTGCCAGCTCCTGCACCGAGCAAGAAGAAGGTGAAGGCAGCAGCTCCGGGTCCGGCTCCAGTTTCGAGCCCGCCAGCGCCGTCAGTGGAGGCTCCAGGACCTGCAGGCCCTGATCAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAGGGAGAAGAAAATTAAAGGGTTTCCTTTTGCTGTCTATGTGTTTGCCTCTTTTTTTTTTTTCTTCATTATTTCCTTTCTTCTTGGGATGGCTCTATATTTCATTTCATTTTGATTATTATTATTAATTAGCCCATGTCTTGTTTGGGACTTTTGATTTATTATTATTATTAGCCTTTTGGAGTACTCTCTCTCTCTCTCTCTAATTACCCATTTTGCTTGGGATTCTTTTGAGGCAAAAATATCTTTGTATCTACACCCTATTTAGAGGGAACCTTCTTTTATATATGTTTTCAATTTCATTATTATTTGTTCATCCATTATACCTTCT

Coding sequence (CDS)

ATGTATGTAAATTACCTAAAATGTCCTCCATCTCCTAAATGCTCTCTATACTCTCTATTTATTCTCTCCCCTCTTTTGATTTCCCTCTCAAACGCTCATCGTCATCCTCGAACAACCAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTTTTGTTGTGTTTCACTTTCATCTCCATTGCTTTCGCCATCGCCGGAGCTCAGTCTCCCTCCAGTCCTCCCACCGCCACCCCTTCTCCTCCCACCACCTCCGCCCCTCCTCCCGCCTCTACTCCTCCCCCTGTTTCATCTCCCCCTCCAGCTGCTACTCCTCCTCCAGCATCCCCACCACCGGCGTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCCTCCCCACCACCGGCTTCTCCTCCTCCGGCATCTCCTCCACCAGCATCCCCTCCCCCAGCGATTCCACCGCCTGCACCATTGGCATCACCACCAACGGCAGTGCCAGCTCCTGCACCGAGCAAGAAGAAGGTGAAGGCAGCAGCTCCGGGTCCGGCTCCAGTTTCGAGCCCGCCAGCGCCGTCAGTGGAGGCTCCAGGACCTGCAGGCCCTGATCAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAG

Protein sequence

MYVNYLKCPPSPKCSLYSLFILSPLLISLSNAHRHPRTTRRRRKMMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAIPPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML

Homology

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BLAST of Cmc01g0003941.1 vs. NCBI nr
Match: KAE8645846.1 (hypothetical protein Csa_017309 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 3.9e-80
Identity = 214/238 (89.92%), Postives = 217/238 (91.18%), Query Frame = 0


Query: 12  PKCSLYSLFILSPLLISLSNAHRHPRTT---RRRRKMMDPRAFLLCFTFISIAFAIAGAQ 71
           PKCSL SLFILSPLLISLSNAH   R T   RRRRKMMDPRA LLCFT ISIAF +A AQ
Sbjct: 16  PKCSLSSLFILSPLLISLSNAHHRHRPTRRRRRRRKMMDPRA-LLCFTLISIAFPLARAQ 75

Query: 72  SPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPAS 131
           SPSSPPTATPSPPTT      STPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPAS
Sbjct: 76  SPSSPPTATPSPPTT------STPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPAS 135

Query: 132 PPPASPPPASPPPASPPPASPPPAS-PPPAIPPPAPLASPPTAVPAPAPSKKKVKAAAPG 191
           PPPASPPPASPPPASPPPA+PPPAS PPPA PPPAPLASPPTAVPAPAPSKKKVKAAAP 
Sbjct: 136 PPPASPPPASPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPS 195

Query: 192 PAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML 246
           P+PVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 196 PSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML 246

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BLAST of Cmc01g0003941.1 vs. NCBI nr
Match: XP_008455018.1 (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo] >KAA0031352.1 classical arabinogalactan protein 9 [Cucumis melo var. makuwa] >TYK06805.1 classical arabinogalactan protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 297.4 bits (760), Expect = 1.2e-76
Identity = 201/207 (97.10%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 45  MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSS------P 104
           MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSS      P
Sbjct: 1   MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATP 60

Query: 105 PPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAI 164
           PPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAI
Sbjct: 61  PPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAI 120

Query: 165 PPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDN 224
           PPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDN
Sbjct: 121 PPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDN 180

Query: 225 SGVEKVWRKESMVGSIVIGMGYVFLML 246
           SGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 181 SGVEKVWRKESMVGSIVIGMGYVFLML 207

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BLAST of Cmc01g0003941.1 vs. NCBI nr
Match: XP_004136948.3 (classical arabinogalactan protein 9 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-66
Identity = 186/202 (92.08%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 45  MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATP 104
           MMDPRA LLCFT ISIAF +A AQSPSSPPTATPSPPTT      STPPPVSSPPPAATP
Sbjct: 1   MMDPRA-LLCFTLISIAFPLARAQSPSSPPTATPSPPTT------STPPPVSSPPPAATP 60

Query: 105 PPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPAS-PPPAIPPPAP 164
           PPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPA+PPPAS PPPA PPPAP
Sbjct: 61  PPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAP 120

Query: 165 LASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEK 224
           LASPPTAVPAPAPSKKKVKAAAP P+PVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEK
Sbjct: 121 LASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEK 180

Query: 225 VWRKESMVGSIVIGMGYVFLML 246
           VWRKESMVGSIVIGMGYVFLML
Sbjct: 181 VWRKESMVGSIVIGMGYVFLML 195

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BLAST of Cmc01g0003941.1 vs. NCBI nr
Match: XP_023553858.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.1 bits (575), Expect = 3.3e-55
Identity = 166/208 (79.81%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 46  MDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPA---- 105
           MDP+A L CFT ISIAFA+AGAQ PSSPPTAT +PPTT+  PP +TPPPVSSPPPA    
Sbjct: 1   MDPQA-LFCFTLISIAFAVAGAQPPSSPPTATLAPPTTTTAPPPATPPPVSSPPPATPPP 60

Query: 106 -----ATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPP 165
                ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPA+PPPASPPPA+PPP
Sbjct: 61  ASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPP 120

Query: 166 AIPPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQN 225
           A PPP PLASPP AVPAPAPSKKK+K AAPGPAPVSSPP PS E PGPAGP +SPTPSQN
Sbjct: 121 ATPPPTPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQN 180

Query: 226 DNSGVEKVWRKESMVGSIVIGMGYVFLM 245
           DNSGVEK WRKE+MVGS++IGMGYV +M
Sbjct: 181 DNSGVEKSWRKETMVGSMLIGMGYVLMM 205

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BLAST of Cmc01g0003941.1 vs. NCBI nr
Match: KAG6571935.1 (hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.9 bits (559), Expect = 2.4e-53
Identity = 166/218 (76.15%), Postives = 182/218 (83.49%), Query Frame = 0


Query: 46  MDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPA---- 105
           MDP+A L C T ISIAFA+AGAQ PSSPPTATP+PPTT+  PP +TPPPVS+PPPA    
Sbjct: 1   MDPQA-LFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPP 60

Query: 106 ----------ATPPPASPPPASPPPASPPPATPPPAS-----PPPASPPPASPPPASPPP 165
                     ATPPPASPPPA+PPPASPPPATPPPAS     PPPASPPPA+PPPASPPP
Sbjct: 61  ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPP 120

Query: 166 ASPPPASPPPAIPPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAG 225
           A+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+K AAPGPAPVSSPP PS E PGPAG
Sbjct: 121 ATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAG 180

Query: 226 PDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM 245
           P +SPTPSQNDNSGVEK WRKE+MVGS++IGMGYV +M
Sbjct: 181 P-ESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMM 215

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BLAST of Cmc01g0003941.1 vs. ExPASy Swiss-Prot
Match: Q9C5S0 (Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 9.8e-18
Identity = 111/203 (54.68%), Postives = 137/203 (67.49%), Query Frame = 0


Query: 49  RAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPAS 108
           R+F +    I +   + G Q+P+SPPTATP+PPT + PPPA+TPPPVS+PPP  T PP  
Sbjct: 3   RSFAIAVICIVLIAGVTG-QAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPP-- 62

Query: 109 PPPASPPPASPPP--ATPPPASPPPASPPPASPPPASPPPASPPPASPPP-AIPPPAPLA 168
           P   +PPPA+PPP  ++PPPASPPPA+PPP + PP  PP ASPPPA+PPP A PPPAPLA
Sbjct: 63  PVTTAPPPANPPPPVSSPPPASPPPATPPPVASPP--PPVASPPPATPPPVATPPPAPLA 122

Query: 169 SPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQ---NDNSGVE 228
           SPP  VPAPAP+    K  +P P+P SSPP PS +APGP+    SP PS    ND +G  
Sbjct: 123 SPPAQVPAPAPT---TKPDSPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGAS 182

Query: 229 KVWRKESMVGSIVIGMGYVFLML 246
           K      MV S+V G   V+ M+
Sbjct: 183 K------MVSSLVFGSVLVWFMI 191

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BLAST of Cmc01g0003941.1 vs. ExPASy TrEMBL
Match: A0A5A7SJX5 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001070 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 5.6e-77
Identity = 201/207 (97.10%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 45  MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSS------P 104
           MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSS      P
Sbjct: 1   MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATP 60

Query: 105 PPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAI 164
           PPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAI
Sbjct: 61  PPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAI 120

Query: 165 PPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDN 224
           PPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDN
Sbjct: 121 PPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDN 180

Query: 225 SGVEKVWRKESMVGSIVIGMGYVFLML 246
           SGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 181 SGVEKVWRKESMVGSIVIGMGYVFLML 207

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BLAST of Cmc01g0003941.1 vs. ExPASy TrEMBL
Match: A0A1S3BZW9 (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 5.6e-77
Identity = 201/207 (97.10%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 45  MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSS------P 104
           MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSS      P
Sbjct: 1   MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATP 60

Query: 105 PPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAI 164
           PPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAI
Sbjct: 61  PPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAI 120

Query: 165 PPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDN 224
           PPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDN
Sbjct: 121 PPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDN 180

Query: 225 SGVEKVWRKESMVGSIVIGMGYVFLML 246
           SGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 181 SGVEKVWRKESMVGSIVIGMGYVFLML 207

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BLAST of Cmc01g0003941.1 vs. ExPASy TrEMBL
Match: A0A0A0K6D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.6e-66
Identity = 185/201 (92.04%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 46  MDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPP 105
           MDPRA LLCFT ISIAF +A AQSPSSPPTATPSPPTT      STPPPVSSPPPAATPP
Sbjct: 1   MDPRA-LLCFTLISIAFPLARAQSPSSPPTATPSPPTT------STPPPVSSPPPAATPP 60

Query: 106 PASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPAS-PPPAIPPPAPL 165
           PASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPA+PPPAS PPPA PPPAPL
Sbjct: 61  PASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAPL 120

Query: 166 ASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKV 225
           ASPPTAVPAPAPSKKKVKAAAP P+PVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKV
Sbjct: 121 ASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKV 180

Query: 226 WRKESMVGSIVIGMGYVFLML 246
           WRKESMVGSIVIGMGYVFLML
Sbjct: 181 WRKESMVGSIVIGMGYVFLML 194

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BLAST of Cmc01g0003941.1 vs. ExPASy TrEMBL
Match: A0A6J1GK65 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111455113 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-52
Identity = 163/212 (76.89%), Postives = 180/212 (84.91%), Query Frame = 0


Query: 46  MDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPA---- 105
           MDP+A L CFT I +AFA+AGAQ PSSPPTA   P TT+APPPA TPPPVS+PPPA    
Sbjct: 1   MDPQA-LFCFTLIFVAFAVAGAQPPSSPPTAXXXPTTTTAPPPA-TPPPVSAPPPATPPA 60

Query: 106 ---------ATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPA 165
                    ATPPPASPPPA+PPPASPPPA+PPPA+PPPASPPPA+PPPASPPPA+PPPA
Sbjct: 61  TPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPA 120

Query: 166 SPPPAIPPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPT 225
           +PPPA PPPAPLASPP AVPAPAPSKKK+K AAPGPAPVSSPP PS E PGPAGP +SPT
Sbjct: 121 TPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPT 180

Query: 226 PSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM 245
           PSQNDNSGVEK WRKE+MVGS++IGMGYV +M
Sbjct: 181 PSQNDNSGVEKSWRKETMVGSMLIGMGYVLMM 208

[Close]

BLAST of Cmc01g0003941.1 vs. ExPASy TrEMBL
Match: A0A6J1I8J9 (classical arabinogalactan protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC111470982 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.2e-36
Identity = 142/225 (63.11%), Postives = 160/225 (71.11%), Query Frame = 0


Query: 46  MDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPP------------------------ 105
           MDP+A L CFT ISIAFA+AGAQ PSSPPTATP+PP                        
Sbjct: 1   MDPQA-LFCFTLISIAFAVAGAQPPSSPPTATPAPPXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 106 --TTSAPPPASTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASP 165
                                      A+PPPASPPPA+PPPA+PPPA+PPPASPPPA+P
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXATPPPASPPPATPPPASPPPATPPPASPPPATP 120

Query: 166 PPASPPPASPPPASPPPAIPPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSV 225
           PPASPPPA+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+K AAPG APVSSPP PS 
Sbjct: 121 PPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGSAPVSSPPMPSA 180

Query: 226 EAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM 245
           E PGPAGP +SPTPSQNDNSGVEK WRKE+++GS++IGMGYV +M
Sbjct: 181 EGPGPAGP-ESPTPSQNDNSGVEKSWRKETVLGSMLIGMGYVLMM 222

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BLAST of Cmc01g0003941.1 vs. TAIR 10
Match: AT2G14890.1 (arabinogalactan protein 9 )

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-19
Identity = 111/203 (54.68%), Postives = 137/203 (67.49%), Query Frame = 0


Query: 49  RAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPAS 108
           R+F +    I +   + G Q+P+SPPTATP+PPT + PPPA+TPPPVS+PPP  T PP  
Sbjct: 3   RSFAIAVICIVLIAGVTG-QAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPP-- 62

Query: 109 PPPASPPPASPPP--ATPPPASPPPASPPPASPPPASPPPASPPPASPPP-AIPPPAPLA 168
           P   +PPPA+PPP  ++PPPASPPPA+PPP + PP  PP ASPPPA+PPP A PPPAPLA
Sbjct: 63  PVTTAPPPANPPPPVSSPPPASPPPATPPPVASPP--PPVASPPPATPPPVATPPPAPLA 122

Query: 169 SPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQ---NDNSGVE 228
           SPP  VPAPAP+    K  +P P+P SSPP PS +APGP+    SP PS    ND +G  
Sbjct: 123 SPPAQVPAPAPT---TKPDSPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGAS 182

Query: 229 KVWRKESMVGSIVIGMGYVFLML 246
           K      MV S+V G   V+ M+
Sbjct: 183 K------MVSSLVFGSVLVWFMI 191

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BLAST of Cmc01g0003941.1 vs. TAIR 10
Match: AT2G14890.2 (arabinogalactan protein 9 )

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-17
Identity = 101/172 (58.72%), Postives = 123/172 (71.51%), Query Frame = 0


Query: 49  RAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPAS 108
           R+F +    I +   + G Q+P+SPPTATP+PPT + PPPA+TPPPVS+PPP  T PP  
Sbjct: 3   RSFAIAVICIVLIAGVTG-QAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPP-- 62

Query: 109 PPPASPPPASPPP--ATPPPASPPPASPPPASPPPASPPPASPPPASPPP-AIPPPAPLA 168
           P   +PPPA+PPP  ++PPPASPPPA+PPP + PP  PP ASPPPA+PPP A PPPAPLA
Sbjct: 63  PVTTAPPPANPPPPVSSPPPASPPPATPPPVASPP--PPVASPPPATPPPVATPPPAPLA 122

Query: 169 SPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQND 218
           SPP  VPAPAP+    K  +P P+P SSPP PS +APGP+    SP PS  D
Sbjct: 123 SPPAQVPAPAPT---TKPDSPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTD 166

The following BLAST results are available for this feature:

BLAST of Cmc01g0003941.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645846.1	3.9e-80	89.92	hypothetical protein Csa_017309 [Cucumis sativus]	[more]
XP_008455018.1	1.2e-76	97.10	PREDICTED: classical arabinogalactan protein 9 [Cucumis melo] >KAA0031352.1 clas...	[more]
XP_004136948.3	1.4e-66	92.08	classical arabinogalactan protein 9 [Cucumis sativus]	[more]
XP_023553858.1	3.3e-55	79.81	classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571935.1	2.4e-53	76.15	hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cmc01g0003941.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5S0	9.8e-18	54.68	Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1...	[more]

BLAST of Cmc01g0003941.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJX5	5.6e-77	97.10	Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3BZW9	5.6e-77	97.10	classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4...	[more]
A0A0A0K6D8	2.6e-66	92.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1	[more]
A0A6J1GK65	2.2e-52	76.89	classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I8J9	8.2e-36	63.11	classical arabinogalactan protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of Cmc01g0003941.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14890.1	6.9e-19	54.68	arabinogalactan protein 9	[more]
AT2G14890.2	2.2e-17	58.72	arabinogalactan protein 9	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 88..109 score: 42.73 coord: 71..83 score: 55.38 coord: 114..130 score: 38.82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..209
None	No IPR available	PANTHER	PTHR37209:SF1	CLASSICAL ARABINOGALACTAN PROTEIN 9	coord: 51..245
IPR044981	Lysine-rich arabinogalactan protein AGP9/17/18	PANTHER	PTHR37209	LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATED	coord: 51..245

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc01g0003941	Cmc01g0003941	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0003941.1-exon	Cmc01g0003941.1-exon-CMiso1.1chr01:734963..735374	exon
Cmc01g0003941.1-exon	Cmc01g0003941.1-exon-CMiso1.1chr01:736130..736796	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0003941.1-three_prime_utr	Cmc01g0003941.1-three_prime_utr-CMiso1.1chr01:734963..735290	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0003941.1-cds	Cmc01g0003941.1-cds-CMiso1.1chr01:735291..735374	CDS
Cmc01g0003941.1-cds	Cmc01g0003941.1-cds-CMiso1.1chr01:736130..736783	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0003941.1-five_prime_utr	Cmc01g0003941.1-five_prime_utr-CMiso1.1chr01:736784..736796	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc01g0003941.1	Cmc01g0003941.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane