Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCACAGAGGTTTCTTCGAAGAGCTTGGATTTATCTCTCTCGAGATTCTTCGATCGGAAACTTACGTAGTACAAAGGACGGTGGAGGTACGAGTTCGTCTCATTTTTTGCTCTGTTTTCTCTAAGAAATTGCAATATGATGTTTCGGATTACATTATTCTAGGATCGGTTTTTCGAATAAGAAAACATCAATGATCGGTTTTTCGGTTTTTCGAATAGAAACTTTAATGGTTAAAAAACAGTCATAGTTTCAACCTATGAAGTTTTAGTTGTTAAGGATTTAGTTTATTTACTATTAAAATTTGAAATAATTTATTATATTATATTATGAAAATATTATTAAGTTTTTTTTTTTAAAATAAGTGATTAAATTTGTTCCTAAAGTATAAACATTAAGACCAAATTATTACTAGTTGAAATTACATGGTTACAAATTTGAAATTGAGAGATTAAATGACTTCCAACTAAATTTGAGACAATAAAATATTGATTTCGGTTGAAGACAAAATATTTTTTAAGGGCATAATGCAATAAACAATTAGGTGAGAAATAGATAAAATAAAAAATGATGGAATTAGGCTATATGTTCCATTAGGACCCTGAATGGATCACGCAGTTGAGACCTATTGTGGAATGGATTTCGAACCTCAACTATTTAAAAGATGATTTTAAAAAAGTTTTTTGCGTTTTAAATGAAATTAGTCTCTAAATGATACGCAATAATCACGAAAAGAGATTTTTTATCCTTTTTGTGATTTGTAGCTTAGTCTAAAACGTTTGTTGTATGTTAATTTGGATCATCAATTAGGTAAAAATCGAACGAGGAAGGGAAGAAATATGCAATAGTTCGATCGAGGCTGTCTCCAAGCAACACTTGCAAGTTTATTTGGTTGAGACAAAATATATTAATTTTAGATTTTCTTAGGGTGATTGTCCTTGACAAAGCTAGATGAAGGAACATTTCTTCCTCACTCTCTCTTTATCTCTCCATTTCTCTCTTCTCCTCTCCGGTGAATCTCGCCACAGCTGCCGCCGCCCTTCATTCTTCCTCTCTCAGGTTCCCTTGGCGCTCCCTGCTTGAATCTCGCCACAGCTGCCGCCGCCCTTCATTCTTCCTCTCTCAGGTTCCCTTGGCGCTCCCTGCTTCCCTTCACTGGTCGGCGCTGTCACGACTGCCAGATATGGCTTCCAGATCTGGAACATAG mRNA sequence ATGCACAGAGGTTTCTTCGAAGAGCTTGGATTTATCTCTCTCGAGATTCTTCGATCGGAAACTTACGTAGTACAAAGGACGGTGGAGGTAAAAATCGAACGAGGAAGGGAAGAAATATGCAATACTGCCGCCGCCCTTCATTCTTCCTCTCTCAGGTTCCCTTGGCGCTCCCTGCTTGAATCTCGCCACAGCTGCCGCCGCCCTTCATTCTTCCTCTCTCAGGTTCCCTTGGCGCTCCCTGCTTCCCTTCACTGGTCGGCGCTGTCACGACTGCCAGATATGGCTTCCAGATCTGGAACATAG Coding sequence (CDS) ATGCACAGAGGTTTCTTCGAAGAGCTTGGATTTATCTCTCTCGAGATTCTTCGATCGGAAACTTACGTAGTACAAAGGACGGTGGAGGTAAAAATCGAACGAGGAAGGGAAGAAATATGCAATACTGCCGCCGCCCTTCATTCTTCCTCTCTCAGGTTCCCTTGGCGCTCCCTGCTTGAATCTCGCCACAGCTGCCGCCGCCCTTCATTCTTCCTCTCTCAGGTTCCCTTGGCGCTCCCTGCTTCCCTTCACTGGTCGGCGCTGTCACGACTGCCAGATATGGCTTCCAGATCTGGAACATAG Protein sequence MHRGFFEELGFISLEILRSETYVVQRTVEVKIERGREEICNTAAALHSSSLRFPWRSLLESRHSCRRPSFFLSQVPLALPASLHWSALSRLPDMASRSGT
Homology
BLAST of CmaCh19G006960.1 vs. NCBI nr
Match: KAG7011735.1 (hypothetical protein SDJN02_26641 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 74.3 bits (181), Expect = 6.6e-10 Identity = 61/134 (45.52%), Postives = 66/134 (49.25%), Query Frame = 0
Query: 1 MHRGFFEELGFISLEILRSETYVVQRTVE------------------VKIERGREEIC-- 60
MHRGFFEELGFISLEILRSET VVQRTVE + I+ + C
Sbjct: 1 MHRGFFEELGFISLEILRSETSVVQRTVEDRSFEKENFNWRMRPTVVMMIKFNGDGDCPE 60
Query: 61 ---NTAAALHSSSLRFPWRSL--LESRHSCRRPSFFLSQVPLALPASLHWSALSRLPD-- 101
+ L S P+ S L P F L PLALPASL WSA SRLPD
Sbjct: 61 TRLDEGTFLPLSLFISPFLSSPPLRRISPLPPPPFILPHNPLALPASLQWSAPSRLPDME 120
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG7011735.1 | 6.6e-10 | 45.52 | hypothetical protein SDJN02_26641 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh19G006960.1:exon:2697 | CmaCh19G006960.1:exon:2697 | exon |
| CmaCh19G006960.1:exon:2698 | CmaCh19G006960.1:exon:2698 | exon |
| CmaCh19G006960.1:exon:2699 | CmaCh19G006960.1:exon:2699 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh19G006960.1:cds | CmaCh19G006960.1:cds | CDS |
| CmaCh19G006960.1:cds | CmaCh19G006960.1:cds_2 | CDS |
| CmaCh19G006960.1:cds | CmaCh19G006960.1:cds_3 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh19G006960.1 | CmaCh19G006960.1-protein | polypeptide |
|
