CmaCh19G002270.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G002270.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	TPR_REGION domain-containing protein
Location	Cma_Chr19: 1565496 .. 1566811 (-)
Sequence length	1117
RNA-Seq Expression	CmaCh19G002270.1
Synteny	CmaCh19G002270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACGAAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCTGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAATAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATATCGCGATCACTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGGAATACCAGAGGAGGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCAGTTGCGGACACTGAATTTCTCAATTCCGGAATCGTAAGCGGCGATGGCGGTGATTTTGTAGCAACAGATAAATTTACGGATGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACCCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTAATCGAAGTCTAGAATTATCAAATTGAAAGTCTGCTTTGATCTGAAATCCTGAAATCCTGAAATCTAATGGAATATTACACTTTAATTTCTTTGATTTGATTGATGATGTAAAGGTTGAGAAAGATACTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGTAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGGTAATTTTCGATATCTGGATCGAGCAGTTTTGCCCTAATTTTATGAACTGGAAGGCTCTGAATGTTTGAATTGGTTTGTGAAGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTAGTTGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCTGGCGCCGGCGCCGGCTCTGGTTGCGGCGTTTTAATGGAAGAAATTGATTTGAAGGAGGTTTCGCGGATATAGGAGAGGAAGAATTGAGGGAGAAGTGGCACGTGATTTGTGGACGTGCCATTTGAGGAGGAAATAAAATGCACGTGATTTGTTGGTGTAATGTAAAGTCCCATAATAATAAAAAAAAATAACTCTGATTTCTATTTTAAAATATTCTATTTATTAGGAAAATTTCGACGTCAAATCCTAAATTACCACCAAATATTTTA

mRNA sequence

CAACGAAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCTGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAATAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATATCGCGATCACTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGGAATACCAGAGGAGGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCAGTTGCGGACACTGAATTTCTCAATTCCGGAATCGTAAGCGGCGATGGCGGTGATTTTGTAGCAACAGATAAATTTACGGATGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACCCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATACTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGTAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTAGTTGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCTGGCGCCGGCGCCGGCTCTGGTTGCGGCGTTTTAATGGAAGAAATTGATTTGAAGGAGGTTTCGCGGATATAGGAGAGGAAGAATTGAGGGAGAAGTGGCACGTGATTTGTGGACGTGCCATTTGAGGAGGAAATAAAATGCACGTGATTTGTTGGTGTAATGTAAAGTCCCATAATAATAAAAAAAAATAACTCTGATTTCTATTTTAAAATATTCTATTTATTAGGAAAATTTCGACGTCAAATCCTAAATTACCACCAAATATTTTA

Coding sequence (CDS)

ATGGAATCCGCTCTCATCAGAACCGTTTCTGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAATAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATATCGCGATCACTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGGAATACCAGAGGAGGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCAGTTGCGGACACTGAATTTCTCAATTCCGGAATCGTAAGCGGCGATGGCGGTGATTTTGTAGCAACAGATAAATTTACGGATGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACCCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATACTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGTAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTAGTTGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCTGGCGCCGGCGCCGGCTCTGGTTGCGGCGTTTTAA

Protein sequence

MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTEFLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEKDTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEEATAVALAPAPALVAAF

Homology

[Close]

BLAST of CmaCh19G002270.1 vs. ExPASy TrEMBL
Match: A0A6J1HRN2 (uncharacterized protein LOC111466874 OS=Cucurbita maxima OX=3661 GN=LOC111466874 PE=4 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 1.0e-148
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120
           SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120

Query: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180
           FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK
Sbjct: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180

Query: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240
           DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY
Sbjct: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240

Query: 241 YAHFLWLVEDDEEEATAVALAPAPALVAAF 271
           YAHFLWLVEDDEEEATAVALAPAPALVAAF
Sbjct: 241 YAHFLWLVEDDEEEATAVALAPAPALVAAF 270

[Close]

BLAST of CmaCh19G002270.1 vs. ExPASy TrEMBL
Match: A0A6J1HIV3 (uncharacterized protein LOC111463957 OS=Cucurbita moschata OX=3662 GN=LOC111463957 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.2e-142
Identity = 262/270 (97.04%), Postives = 265/270 (98.15%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120
           SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPS IPE+EFLNQDEFHRDS ADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120

Query: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180
           FLNSGIVSGDGGDFVA DKF+DGSSESSKIRAYYEEMLKSNPSD LILRNYGKFLHEVEK
Sbjct: 121 FLNSGIVSGDGGDFVA-DKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEK 180

Query: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240
           D+KRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY
Sbjct: 181 DSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240

Query: 241 YAHFLWLVEDDEEEATAVALAPAPALVAAF 271
           YAHFLWLVEDDEEEATAVA APAPALVAAF
Sbjct: 241 YAHFLWLVEDDEEEATAVAPAPAPALVAAF 269

[Close]

BLAST of CmaCh19G002270.1 vs. ExPASy TrEMBL
Match: A0A6J1EX26 (uncharacterized protein LOC111437316 OS=Cucurbita moschata OX=3662 GN=LOC111437316 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 4.3e-94
Identity = 190/273 (69.60%), Postives = 225/273 (82.42%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RTVS+PV+  +  ASSSFSNY+PL+G  +G  SS+SSPKISLHFE+N+ RG+N 
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGF--RSRYWSVPSGIPEEEFLNQDEFHRDSVA- 120
           SGIRRA+SESDISRSLHEVS+PYDQFGG   RSR  S  S IPEEEFLNQDEF  DS+  
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 DTEFLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHE 180
           D+  L+SGI   DG +F  TD F DGS++ +KI AYYEE+LK NP+D L+LRNYGKFLHE
Sbjct: 121 DSGCLDSGIGCSDGAEFF-TDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180

Query: 181 VEKDTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLV 240
           VEKD  R+EECYSRAILA+P DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLV
Sbjct: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240

Query: 241 IGYYAHFLWLVEDDEEEATAVALAPAPALVAAF 271
           IGYYA+FLW +EDDEEE  A  + PA A+VAAF
Sbjct: 241 IGYYAYFLWQIEDDEEE-EAAEVWPA-AMVAAF 270

[Close]

BLAST of CmaCh19G002270.1 vs. ExPASy TrEMBL
Match: A0A6J1K5B2 (uncharacterized protein LOC111491305 OS=Cucurbita maxima OX=3661 GN=LOC111491305 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.5e-91
Identity = 187/273 (68.50%), Postives = 222/273 (81.32%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL RTVS+PV+S +  ASSSFSNY+PL+G  +G  SS+SSPKISL FE+N+ RG+N 
Sbjct: 1   MKSALFRTVSIPVISPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLLFEMNNPRGRNS 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGF--RSRYWSVPSGIPEEEFLNQDEFHRDSV-A 120
           SGIRR +SESDISRSLHEVS+PYDQFGG   RSR  S  S IPEEEFLNQDEF  DS+  
Sbjct: 61  SGIRRVSSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMEE 120

Query: 121 DTEFLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHE 180
           D+  L+SGI   DG +F  TD F DGS++ +KI AYYEE+LK NP+D L+LRNYGKFLHE
Sbjct: 121 DSGCLDSGIGCSDGAEFF-TDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180

Query: 181 VEKDTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLV 240
           VEKD  R+EECYSRAILA+P DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLV
Sbjct: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240

Query: 241 IGYYAHFLWLVEDDEEEATAVALAPAPALVAAF 271
           IG YA+FLW +EDDEE+  A  + PA A+VAAF
Sbjct: 241 IGCYAYFLWQIEDDEEQ-EAAEVWPA-AMVAAF 270

[Close]

BLAST of CmaCh19G002270.1 vs. ExPASy TrEMBL
Match: A0A6J1DU99 (uncharacterized protein LOC111023531 OS=Momordica charantia OX=3673 GN=LOC111023531 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 5.1e-79
Identity = 182/304 (59.87%), Postives = 207/304 (68.09%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL RT SVPV+S A A S SFSNY+P +       S +SSPKISLHFEINHRRG   
Sbjct: 1   MKSALARTGSVPVISPAGAPSPSFSNYRPFH------KSYVSSPKISLHFEINHRRGAKS 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLN------------- 120
           SGIRRA+SESDI+RSLH++S+ YDQ GG  SR  S PSGIPE+EFLN             
Sbjct: 61  SGIRRASSESDIARSLHQISNRYDQLGGVGSR--SFPSGIPEDEFLNESRDAVAEEWIIQ 120

Query: 121 --QDEFHRD-----------SVADTEFLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYY 180
             +DEF              S+ +  F  SGI  G GG+ V TD F+ GSS+ SKI AYY
Sbjct: 121 EDEDEFDISNYAGDFSGGAISMKNAGFFGSGI--GSGGNIV-TDTFSGGSSDRSKIGAYY 180

Query: 181 EEMLKSNPSDPLILRNYGKFLHEVEKDTKRAEECYSRAILASPRDGELLALYGKLVWDTQ 240
           EEMLK NPSD L+LRNYGKFLHEVE D  RAEE Y RAILASP DGELL+LYGKLVW+TQ
Sbjct: 181 EEMLKLNPSDSLLLRNYGKFLHEVENDAVRAEEFYGRAILASPGDGELLSLYGKLVWETQ 240

Query: 241 RDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEE--------ATAVALAPAPAL 271
           RD++RA+ YFDRAV ASP+DC V+G YAHFLW VE DEEE        A   A  P  AL
Sbjct: 241 RDEQRAKSYFDRAVYASPDDCSVLGSYAHFLWEVEADEEEEEEEEEAAAAEKAEVPPAAL 293

[Close]

BLAST of CmaCh19G002270.1 vs. NCBI nr
Match: XP_022967316.1 (uncharacterized protein LOC111466874 [Cucurbita maxima])

HSP 1 Score: 535.8 bits (1379), Expect = 2.1e-148
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120
           SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120

Query: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180
           FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK
Sbjct: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180

Query: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240
           DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY
Sbjct: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240

Query: 241 YAHFLWLVEDDEEEATAVALAPAPALVAAF 271
           YAHFLWLVEDDEEEATAVALAPAPALVAAF
Sbjct: 241 YAHFLWLVEDDEEEATAVALAPAPALVAAF 270

[Close]

BLAST of CmaCh19G002270.1 vs. NCBI nr
Match: XP_022963763.1 (uncharacterized protein LOC111463957 [Cucurbita moschata])

HSP 1 Score: 514.2 bits (1323), Expect = 6.7e-142
Identity = 262/270 (97.04%), Postives = 265/270 (98.15%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120
           SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPS IPE+EFLNQDEFHRDS ADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120

Query: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180
           FLNSGIVSGDGGDFVA DKF+DGSSESSKIRAYYEEMLKSNPSD LILRNYGKFLHEVEK
Sbjct: 121 FLNSGIVSGDGGDFVA-DKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEK 180

Query: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240
           D+KRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY
Sbjct: 181 DSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240

Query: 241 YAHFLWLVEDDEEEATAVALAPAPALVAAF 271
           YAHFLWLVEDDEEEATAVA APAPALVAAF
Sbjct: 241 YAHFLWLVEDDEEEATAVAPAPAPALVAAF 269

[Close]

BLAST of CmaCh19G002270.1 vs. NCBI nr
Match: KAG6571653.1 (hypothetical protein SDJN03_28381, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011382.1 hypothetical protein SDJN02_26287 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 513.1 bits (1320), Expect = 1.5e-141
Identity = 261/270 (96.67%), Postives = 265/270 (98.15%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120
           SGIRRAASESDI+RSLHEVSSPYDQFGGFRSRYWSVPS IPE+EFLNQDEFHRDS ADTE
Sbjct: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120

Query: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180
           FLNSGIVSGDGGDFVA DKF+DGSSESSKIRAYYEEMLKSNPSD LILRNYGKFLHEVEK
Sbjct: 121 FLNSGIVSGDGGDFVA-DKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEK 180

Query: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240
           D+KRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY
Sbjct: 181 DSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240

Query: 241 YAHFLWLVEDDEEEATAVALAPAPALVAAF 271
           YAHFLWLVEDDEEEATAVA APAPALVAAF
Sbjct: 241 YAHFLWLVEDDEEEATAVAPAPAPALVAAF 269

[Close]

BLAST of CmaCh19G002270.1 vs. NCBI nr
Match: XP_023554672.1 (uncharacterized protein LOC111811867 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 510.8 bits (1314), Expect = 7.4e-141
Identity = 261/270 (96.67%), Postives = 263/270 (97.41%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120
           SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPS IPE+EFLNQDEFHR S ADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRGSFADTE 120

Query: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180
           FLNSGIVSGDGGDFVA DKFTDGSSESSKIRAYYEEMLKSNPSD LILRNYGKFLHEVEK
Sbjct: 121 FLNSGIVSGDGGDFVA-DKFTDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEK 180

Query: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240
           D+KRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY
Sbjct: 181 DSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240

Query: 241 YAHFLWLVEDDEEEATAVALAPAPALVAAF 271
           YAHFLWLVEDDEEEA AVA APAPALVAAF
Sbjct: 241 YAHFLWLVEDDEEEAMAVAPAPAPALVAAF 269

[Close]

BLAST of CmaCh19G002270.1 vs. NCBI nr
Match: XP_022930988.1 (uncharacterized protein LOC111437316 [Cucurbita moschata] >KAG7036203.1 hypothetical protein SDJN02_03004 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.4 bits (908), Expect = 8.9e-94
Identity = 190/273 (69.60%), Postives = 225/273 (82.42%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RTVS+PV+  +  ASSSFSNY+PL+G  +G  SS+SSPKISLHFE+N+ RG+N 
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGF--RSRYWSVPSGIPEEEFLNQDEFHRDSVA- 120
           SGIRRA+SESDISRSLHEVS+PYDQFGG   RSR  S  S IPEEEFLNQDEF  DS+  
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 DTEFLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHE 180
           D+  L+SGI   DG +F  TD F DGS++ +KI AYYEE+LK NP+D L+LRNYGKFLHE
Sbjct: 121 DSGCLDSGIGCSDGAEFF-TDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180

Query: 181 VEKDTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLV 240
           VEKD  R+EECYSRAILA+P DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLV
Sbjct: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240

Query: 241 IGYYAHFLWLVEDDEEEATAVALAPAPALVAAF 271
           IGYYA+FLW +EDDEEE  A  + PA A+VAAF
Sbjct: 241 IGYYAYFLWQIEDDEEE-EAAEVWPA-AMVAAF 270

[Close]

BLAST of CmaCh19G002270.1 vs. TAIR 10
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 172.2 bits (435), Expect = 5.8e-43
Identity = 114/292 (39.04%), Postives = 159/292 (54.45%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPL-----YGALSGQNSSISSPKISLHFEINHR 60
           M+S L+RT S+PVL + + +  S     P+       +LS      +  KIS+  + N  
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSVESLSSYGERFAGGKISIEVKAN-- 60

Query: 61  RGKNWSGIRRAASESDISRS---LHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFH 120
                 G+RR  SESD+ RS   L  V S               P+ IPE++   ++E  
Sbjct: 61  -----VGMRRVLSESDVIRSERMLKRVGSK------------PSPARIPEDDEAGEEEIR 120

Query: 121 RDS-----------VADTEFLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSN 180
                         V +  F   G+  G G      +    G  + SKI  YY EML+SN
Sbjct: 121 FADGWGSMISGGLPVEEKCFTGGGVGGGSGYSGGYGNGGGGGYEDKSKIGDYYREMLRSN 180

Query: 181 PSDPLILRNYGKFLHEVEKDTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQ 240
           P++ L+L NYGKFL+EVEKD + AEE Y RAIL +P DGE L++YG+L+W+T+RD++RAQ
Sbjct: 181 PNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQ 240

Query: 241 YYFDRAVCASPNDCLVIGYYAHFLWLVE----DDEEEATAVALAPAPALVAA 270
            YFD+AV ASPNDC+V+G YA F+W  E    DDEEE     +A +P +V+A
Sbjct: 241 GYFDQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEEEEWMAASPLMVSA 273

[Close]

BLAST of CmaCh19G002270.1 vs. TAIR 10
Match: AT5G20190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 118.2 bits (295), Expect = 9.9e-27
Identity = 90/270 (33.33%), Postives = 131/270 (48.52%), Query Frame = 0


Query: 5   LIRTVSVPVLSSAVAASS-------------SFSNYKPLYGALSGQNSSISSPKISLHFE 64
           L+R+ S P+L+S V  SS                 ++ +   LS  +SS     +S+H  
Sbjct: 2   LLRSASTPLLNSLVHVSSPRDSPIETVESVHQIQRHRSI--TLSASSSSCCYSPMSVHSS 61

Query: 65  INHRRGKNWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEF 124
            +  R      ++R AS+SD+ R L     P  +F    +    V  GI     +    +
Sbjct: 62  DDSSR-----RMKRTASDSDL-RHLTSTKPPVSKFLSGGALMEDVDEGI-GFGLIRTSSY 121

Query: 125 HRDSVA---DTEFLNSG----IVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSD 184
              S A   DTE    G       G  G         DG  +++ +  +Y +M+++NP +
Sbjct: 122 DGISWALDEDTEVAGGGGGGMFHGGGKGRSGGRSDGGDGGDDNTDV--HYRKMIEANPGN 181

Query: 185 PLILRNYGKFLHEVEKDTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYF 244
            + L NY KFL EV KD  +AEE   RAIL SP DG +LA+Y +LVW   +D  RA+ YF
Sbjct: 182 GIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWKIHKDSSRAENYF 241

Query: 245 DRAVCASPNDCLVIGYYAHFLWLVEDDEEE 255
           ++AV A+P DC V   YA FLW  E++EEE
Sbjct: 242 NQAVAAAPEDCYVQASYARFLWDAEEEEEE 260

[Close]

BLAST of CmaCh19G002270.1 vs. TAIR 10
Match: AT4G32340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-25
Identity = 60/133 (45.11%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 123 NSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEKDT 182
           ++G   G GGD         G      +  YYEEM++  P D L+L NY +FL EV+ D 
Sbjct: 87  SNGGFGGRGGDGAG----GGGGGGGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDG 146

Query: 183 KRAEECYSRAILA-SPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYY 242
           ++AEE   RA+L+ S RDGELL++YG L+W    D  RAQ Y+D+AV +SP+DC V+  Y
Sbjct: 147 RKAEEYCERAMLSESGRDGELLSMYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASY 206

Query: 243 AHFLWLVEDDEEE 255
           A FLW  E++ EE
Sbjct: 207 ARFLWDAEEEVEE 215

[Close]

BLAST of CmaCh19G002270.1 vs. TAIR 10
Match: AT1G80130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 7.9e-24
Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 126 IVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEKDTKRA 185
           I +G GG         DG         YY EM+ SNP + L+  NY KFL EV+ D K+A
Sbjct: 144 ICNGGGG---VGGSGVDGGRSEDATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKA 203

Query: 186 EECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFL 245
           EE   RAIL +  DG +L+LY  L+    +D++RA  Y+ +AV  SP DC V   YA FL
Sbjct: 204 EEYCERAILGNTNDGNVLSLYADLILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFL 263

Query: 246 WLVEDDEEE 255
           W V++DEE+
Sbjct: 264 WDVDEDEED 269

[Close]

BLAST of CmaCh19G002270.1 vs. TAIR 10
Match: AT1G04530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 5.3e-20
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 153 YYEEMLKSNPSDPLILRNYGKFLHEVEKDTKRAEECYSRAILASPRDGELLALYGKLVWD 212
           YY+ ML+  P  PL+L+NY KFL E + D   AEE Y +  +  P DG  LA YG+LV  
Sbjct: 124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 183

Query: 213 TQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEE 255
             +D+ +A  YF+RAV ASP+D +V+  YA FLW +  D+++
Sbjct: 184 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADDDD 224

The following BLAST results are available for this feature:

BLAST of CmaCh19G002270.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G002270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HRN2	1.0e-148	100.00	uncharacterized protein LOC111466874 OS=Cucurbita maxima OX=3661 GN=LOC111466874...	[more]
A0A6J1HIV3	3.2e-142	97.04	uncharacterized protein LOC111463957 OS=Cucurbita moschata OX=3662 GN=LOC1114639...	[more]
A0A6J1EX26	4.3e-94	69.60	uncharacterized protein LOC111437316 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A6J1K5B2	1.5e-91	68.50	uncharacterized protein LOC111491305 OS=Cucurbita maxima OX=3661 GN=LOC111491305...	[more]
A0A6J1DU99	5.1e-79	59.87	uncharacterized protein LOC111023531 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of CmaCh19G002270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967316.1	2.1e-148	100.00	uncharacterized protein LOC111466874 [Cucurbita maxima]	[more]
XP_022963763.1	6.7e-142	97.04	uncharacterized protein LOC111463957 [Cucurbita moschata]	[more]
KAG6571653.1	1.5e-141	96.67	hypothetical protein SDJN03_28381, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023554672.1	7.4e-141	96.67	uncharacterized protein LOC111811867 [Cucurbita pepo subsp. pepo]	[more]
XP_022930988.1	8.9e-94	69.60	uncharacterized protein LOC111437316 [Cucurbita moschata] >KAG7036203.1 hypothet...	[more]

BLAST of CmaCh19G002270.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17940.1	5.8e-43	39.04	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G20190.1	9.9e-27	33.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G32340.1	1.9e-25	45.11	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80130.1	7.9e-24	43.41	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G04530.1	5.3e-20	45.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 144..245 e-value: 1.6E-12 score: 49.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 151..253
None	No IPR available	PANTHER	PTHR26312:SF123	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 1..257
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 1..257

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh19G002270	CmaCh19G002270	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh19G002270.1:exon:1376	CmaCh19G002270.1:exon:1376	exon
CmaCh19G002270.1:exon:1375	CmaCh19G002270.1:exon:1375	exon
CmaCh19G002270.1:exon:1374	CmaCh19G002270.1:exon:1374	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh19G002270.1:three_prime_utr	CmaCh19G002270.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh19G002270.1:cds	CmaCh19G002270.1:cds_3	CDS
CmaCh19G002270.1:cds	CmaCh19G002270.1:cds_2	CDS
CmaCh19G002270.1:cds	CmaCh19G002270.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh19G002270.1:five_prime_utr	CmaCh19G002270.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh19G002270.1	CmaCh19G002270.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding