CmaCh18G011490.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G011490.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr18: 9245799 .. 9247683 (-)
Sequence length	1794
RNA-Seq Expression	CmaCh18G011490.1
Synteny	CmaCh18G011490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATCTCGTGTATTCCAACATGCCAATTTGCTCTCACAAAACCCAAGAATGAGTTCATAAATCAACCCCATCCACTTTCTCTTTTCTCCAAATGTGCATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTTACCCCACCACTTCGTCCATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTCGTATTCTCTCTGTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTGGGATTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCCTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTCGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGATTTGATAAATTTGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGCGGTAGTATAGTTGATGCCATTTCGATCTTCGAGGGAATGCGTGTGAGAGACACACAAGCTTGGTCTGCAATGATAGTTGCATATGCAACTCATGGGGATGGCTTGAAAGCCATCTCGATGTTTGAAGAGATGAAGAAAGCAGGAGTTCGACCCGATGAGATTACGTTTTTGGGACTTTTGTATGCTTGCAGTCATGCTGGACTAGTAGAGGAAGGTAGAGGGTATTTCTATAGCATGTATAAAAACCATGGAATGACTCCAGGGATCAAGCATTATGGATGTATGGTGGATTTGCTTGGTCGAACAGGTCGATTAGACGAGGCTTATAAGTTCATAGATGAATTGGCAATTAAGCCGACACCTATTCTCTGGCGCACCCTGTTATCTGCTTGCAGCAACCACGGTAATGTCGACTTGGCAAAGCGAGTCATTGAACGGATTTTTGAATTAGATGATTCCCATGGAGGCGACTATGTCATATTATCGAACTTGTGTGCTCGATTAGGAAGATGGGAAGACGTGAACCGTCTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTCCATTTCAGTTGAGCTGCGACGAGCGCTCGACGAGTTAATCCAGGAAATAAAGTTAGCGGGATATGTACCGGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGCGAAAGAGCTCGTCCTGAGATATCACAGTGAAAAGCTAGCCATGGCTTTTGGGCTCCTAAATACACCTCCCGGTACAACTATAAGGGTAGTCAAGAACCTCCGTATTTGTGGAGATTGTCACAATGCTGCAAAGCTTATATCTCTGATTTTCGGGAGGCAGATCGTCATTAGGGACGTTCAACGATTCCATCGCTTTGAAGACGGGCAATGCTCCTGTTGTGATTTCTGGTAAGAGAATATGTTGAAATCATAAGCTATTGTTACAGTTGATATTTCTTCTGCAATGGCCATGCTCCTTTATGTTTGTATAGCCATGAAGA

mRNA sequence

ATGGCAATCTCGTGTATTCCAACATGCCAATTTGCTCTCACAAAACCCAAGAATGAGTTCATAAATCAACCCCATCCACTTTCTCTTTTCTCCAAATGTGCATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTTACCCCACCACTTCGTCCATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTCGTATTCTCTCTGTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTGGGATTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCCTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTCGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGATTTGATAAATTTGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGCGGTAGTATAGTTGATGCCATTTCGATCTTCGAGGGAATGCGTGTGAGAGACACACAAGCTTGGTCTGCAATGATAGTTGCATATGCAACTCATGGGGATGGCTTGAAAGCCATCTCGATGTTTGAAGAGATGAAGAAAGCAGGAGTTCGACCCGATGAGATTACGTTTTTGGGACTTTTGTATGCTTGCAGTCATGCTGGACTAGTAGAGGAAGGTAGAGGGTATTTCTATAGCATGTATAAAAACCATGGAATGACTCCAGGGATCAAGCATTATGGATGTATGGTGGATTTGCTTGGTCGAACAGGTCGATTAGACGAGGCTTATAAGTTCATAGATGAATTGGCAATTAAGCCGACACCTATTCTCTGGCGCACCCTGTTATCTGCTTGCAGCAACCACGGTAATGTCGACTTGGCAAAGCGAGTCATTGAACGGATTTTTGAATTAGATGATTCCCATGGAGGCGACTATGTCATATTATCGAACTTGTGTGCTCGATTAGGAAGATGGGAAGACGTGAACCGTCTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTCCATTTCAGTTGAGCTGCGACGAGCGCTCGACGAGTTAATCCAGGAAATAAAGTTAGCGGGATATGTACCGGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGCGAAAGAGCTCGTCCTGAGATATCACAGTGAAAAGCTAGCCATGGCTTTTGGGCTCCTAAATACACCTCCCGGTACAACTATAAGGGTAGTCAAGAACCTCCGTATTTGTGGAGATTGTCACAATGCTGCAAAGCTTATATCTCTGATTTTCGGGAGGCAGATCGTCATTAGGGACGTTCAACGATTCCATCGCTTTGAAGACGGGCAATGCTCCTGTTGTGATTTCTGA

Coding sequence (CDS)

ATGGCAATCTCGTGTATTCCAACATGCCAATTTGCTCTCACAAAACCCAAGAATGAGTTCATAAATCAACCCCATCCACTTTCTCTTTTCTCCAAATGTGCATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTTACCCCACCACTTCGTCCATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTCGTATTCTCTCTGTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTGGGATTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCCTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTCGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGATTTGATAAATTTGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGCGGTAGTATAGTTGATGCCATTTCGATCTTCGAGGGAATGCGTGTGAGAGACACACAAGCTTGGTCTGCAATGATAGTTGCATATGCAACTCATGGGGATGGCTTGAAAGCCATCTCGATGTTTGAAGAGATGAAGAAAGCAGGAGTTCGACCCGATGAGATTACGTTTTTGGGACTTTTGTATGCTTGCAGTCATGCTGGACTAGTAGAGGAAGGTAGAGGGTATTTCTATAGCATGTATAAAAACCATGGAATGACTCCAGGGATCAAGCATTATGGATGTATGGTGGATTTGCTTGGTCGAACAGGTCGATTAGACGAGGCTTATAAGTTCATAGATGAATTGGCAATTAAGCCGACACCTATTCTCTGGCGCACCCTGTTATCTGCTTGCAGCAACCACGGTAATGTCGACTTGGCAAAGCGAGTCATTGAACGGATTTTTGAATTAGATGATTCCCATGGAGGCGACTATGTCATATTATCGAACTTGTGTGCTCGATTAGGAAGATGGGAAGACGTGAACCGTCTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTCCATTTCAGTTGAGCTGCGACGAGCGCTCGACGAGTTAATCCAGGAAATAAAGTTAGCGGGATATGTACCGGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGCGAAAGAGCTCGTCCTGAGATATCACAGTGAAAAGCTAGCCATGGCTTTTGGGCTCCTAAATACACCTCCCGGTACAACTATAAGGGTAGTCAAGAACCTCCGTATTTGTGGAGATTGTCACAATGCTGCAAAGCTTATATCTCTGATTTTCGGGAGGCAGATCGTCATTAGGGACGTTCAACGATTCCATCGCTTTGAAGACGGGCAATGCTCCTGTTGTGATTTCTGA

Protein sequence

MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF

Homology

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy Swiss-Prot
Match: Q8LK93 (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 835.1 bits (2156), Expect = 5.0e-241
Identity = 393/581 (67.64%), Postives = 477/581 (82.10%), Query Frame = 0


Query: 17  KNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTKLINFCTRYPTTSSMDH 76
           K + +N  +P+ L SKC SLREL QIQAY IK+++  D+S + KLINFCT  PT SSM +
Sbjct: 23  KIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHI-EDVSFVAKLINFCTESPTESSMSY 82

Query: 77  AHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAG 136
           A HLF+ M + DIV+FN MARGY+R  +P  VFSLF ++L  G+LPD+YTF SLLKACA 
Sbjct: 83  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 142

Query: 137 SKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAI 196
           +KALEEGRQLHC ++KLG   N+Y+CPTLINMY  C D+++AR VFD + EPC+V YNA+
Sbjct: 143 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 202

Query: 197 ITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGF 256
           ITGYAR ++PNEALSLFRE+Q   L+P ++T+LS++ SCALLG+LDLG+WIH+Y KK  F
Sbjct: 203 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 262

Query: 257 DKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEE 316
            K+VKVNTALIDM+AKCGS+ DA+SIFE MR +DTQAWSAMIVAYA HG   K++ MFE 
Sbjct: 263 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 322

Query: 317 MKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTG 376
           M+   V+PDEITFLGLL ACSH G VEEGR YF  M    G+ P IKHYG MVDLL R G
Sbjct: 323 MRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAG 382

Query: 377 RLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSN 436
            L++AY+FID+L I PTP+LWR LL+ACS+H N+DLA++V ERIFELDDSHGGDYVILSN
Sbjct: 383 NLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSN 442

Query: 437 LCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDE 496
           L AR  +WE V+ LRK+MKDR  VKVPGCSS+EVNNVVHEFFSGDGV S + +L RALDE
Sbjct: 443 LYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDE 502

Query: 497 LIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLR 556
           +++E+KL+GYVPDTS+V HA+M ++ KE+ LRYHSEKLA+ FGLLNTPPGTTIRVVKNLR
Sbjct: 503 MVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLR 562

Query: 557 ICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           +C DCHNAAKLISLIFGR++V+RDVQRFH FEDG+CSC DF
Sbjct: 563 VCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDF 602

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 1.9e-139
Identity = 240/548 (43.80%), Postives = 357/548 (65.15%), Query Frame = 0


Query: 52  HNDISVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSL 111
           H D+   T LI     Y +   +++A  LFD++  KD+V +N M  GYA + +      L
Sbjct: 197 HRDVVSYTALIK---GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 256

Query: 112 FAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAA 171
           F  ++ + + PD+ T  +++ ACA S ++E GRQ+H +    GFG N+ I   LI++Y+ 
Sbjct: 257 FKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 316

Query: 172 CNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSI 231
           C ++  A G+F+ +    ++S+N +I GY   +   EAL LF+E+  S   P DVTMLSI
Sbjct: 317 CGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 376

Query: 232 IMSCALLGALDLGRWIHEYVKK--KGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVR 291
           + +CA LGA+D+GRWIH Y+ K  KG      + T+LIDMYAKCG I  A  +F  +  +
Sbjct: 377 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 436

Query: 292 DTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYF 351
              +W+AMI  +A HG    +  +F  M+K G++PD+ITF+GLL ACSH+G+++ GR  F
Sbjct: 437 SLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIF 496

Query: 352 YSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGN 411
            +M +++ MTP ++HYGCM+DLLG +G   EA + I+ + ++P  ++W +LL AC  HGN
Sbjct: 497 RTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGN 556

Query: 412 VDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVE 471
           V+L +   E + +++  + G YV+LSN+ A  GRW +V + R L+ D+G+ KVPGCSS+E
Sbjct: 557 VELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIE 616

Query: 472 VNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRY 531
           +++VVHEF  GD  H  + E+   L+E+   ++ AG+VPDTS V   +MEEE KE  LR+
Sbjct: 617 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRH 676

Query: 532 HSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFED 591
           HSEKLA+AFGL++T PGT + +VKNLR+C +CH A KLIS I+ R+I+ RD  RFH F D
Sbjct: 677 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 736

Query: 592 GQCSCCDF 598
           G CSC D+
Sbjct: 737 GVCSCNDY 740

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 7.1e-139
Identity = 244/621 (39.29%), Postives = 370/621 (59.58%), Query Frame = 0


Query: 8   TCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTKLINFCTR 67
           +C F+L        N    +S   +C+   ELKQI A  +KT L  D   +TK ++FC  
Sbjct: 5   SCSFSLEH------NLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCIS 64

Query: 68  YPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTF 127
             ++  + +A  +FD     D  L+N+M RG++ S+ P     L+ ++LCS    + YTF
Sbjct: 65  STSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTF 124

Query: 128 SSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEE 187
            SLLKAC+   A EE  Q+H    KLG+ +++Y   +LIN YA   +   A  +FD + E
Sbjct: 125 PSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPE 184

Query: 188 PCIVSYNAIITGYARSSQPN-------------------------------EALSLFREL 247
           P  VS+N++I GY ++ + +                               EAL LF E+
Sbjct: 185 PDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEM 244

Query: 248 QASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSI 307
           Q S++EP +V++ + + +CA LGAL+ G+WIH Y+ K        +   LIDMYAKCG +
Sbjct: 245 QNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEM 304

Query: 308 VDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYAC 367
            +A+ +F+ ++ +  QAW+A+I  YA HG G +AIS F EM+K G++P+ ITF  +L AC
Sbjct: 305 EEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTAC 364

Query: 368 SHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPIL 427
           S+ GLVEEG+  FYSM +++ + P I+HYGC+VDLLGR G LDEA +FI E+ +KP  ++
Sbjct: 365 SYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVI 424

Query: 428 WRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKD 487
           W  LL AC  H N++L + + E +  +D  HGG YV  +N+ A   +W+     R+LMK+
Sbjct: 425 WGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKE 484

Query: 488 RGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHA 547
           +GV KVPGCS++ +    HEF +GD  H    +++     + ++++  GYVP+   +   
Sbjct: 485 QGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLD 544

Query: 548 DMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQI 598
            ++++ +E ++  HSEKLA+ +GL+ T PGT IR++KNLR+C DCH   KLIS I+ R I
Sbjct: 545 LVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDI 604

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 3.3e-136
Identity = 238/558 (42.65%), Postives = 356/558 (63.80%), Query Frame = 0


Query: 40  KQIQAYTIKTNLHNDISVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGY 99
           K+I  Y +++   + +++ T L++    Y    S++ A  LFD ML++++V +N M   Y
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDM---YAKCGSLETARQLFDGMLERNVVSWNSMIDAY 315

Query: 100 ARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNI 159
            ++ +P     +F ++L  G+ P D +    L ACA    LE GR +H  +++LG   N+
Sbjct: 316 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 375

Query: 160 YICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQAS 219
            +  +LI+MY  C +++ A  +F  ++   +VS+NA+I G+A++ +P +AL+ F ++++ 
Sbjct: 376 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 435

Query: 220 NLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDA 279
            ++P   T +S+I + A L      +WIH  V +   DK V V TAL+DMYAKCG+I+ A
Sbjct: 436 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 495

Query: 280 ISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHA 339
             IF+ M  R    W+AMI  Y THG G  A+ +FEEM+K  ++P+ +TFL ++ ACSH+
Sbjct: 496 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 555

Query: 340 GLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRT 399
           GLVE G   FY M +N+ +   + HYG MVDLLGR GRL+EA+ FI ++ +KP   ++  
Sbjct: 556 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 615

Query: 400 LLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGV 459
           +L AC  H NV+ A++  ER+FEL+   GG +V+L+N+      WE V ++R  M  +G+
Sbjct: 616 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 675

Query: 460 VKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADME 519
            K PGCS VE+ N VH FFSG   H  S ++   L++LI  IK AGYVPDT+LV    +E
Sbjct: 676 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLV--LGVE 735

Query: 520 EEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIR 579
            + KE +L  HSEKLA++FGLLNT  GTTI V KNLR+C DCHNA K ISL+ GR+IV+R
Sbjct: 736 NDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVR 795

Query: 580 DVQRFHRFEDGQCSCCDF 598
           D+QRFH F++G CSC D+
Sbjct: 796 DMQRFHHFKNGACSCGDY 808

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 3.7e-135
Identity = 239/574 (41.64%), Postives = 355/574 (61.85%), Query Frame = 0


Query: 28  SLFSKCASLRELKQ---IQAYTIKTNLHNDISVLTKLINFCTRYPTTSSMDHAHHLFDKM 87
           +L  KC   + L Q   + A+ +++   +DI +   L+N    Y    S++ A  +F+KM
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNM---YAKCGSLEEARKVFEKM 124

Query: 88  LDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGR 147
             +D V +  +  GY++ + P      F Q+L  G  P+++T SS++KA A  +    G 
Sbjct: 125 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH 184

Query: 148 QLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSS 207
           QLH F +K GF  N+++   L+++Y     M+ A+ VFD +E    VS+NA+I G+AR S
Sbjct: 185 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 244

Query: 208 QPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNT 267
              +AL LF+ +      P+  +  S+  +C+  G L+ G+W+H Y+ K G         
Sbjct: 245 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 304

Query: 268 ALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRP 327
            L+DMYAK GSI DA  IF+ +  RD  +W++++ AYA HG G +A+  FEEM++ G+RP
Sbjct: 305 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRP 364

Query: 328 DEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKF 387
           +EI+FL +L ACSH+GL++EG  ++Y + K  G+ P   HY  +VDLLGR G L+ A +F
Sbjct: 365 NEISFLSVLTACSHSGLLDEG-WHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRF 424

Query: 388 IDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRW 447
           I+E+ I+PT  +W+ LL+AC  H N +L     E +FELD    G +VIL N+ A  GRW
Sbjct: 425 IEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRW 484

Query: 448 EDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIQEIKLA 507
            D  R+RK MK+ GV K P CS VE+ N +H F + D  H    E+ R  +E++ +IK  
Sbjct: 485 NDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 544

Query: 508 GYVPDTS-LVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHN 567
           GYVPDTS ++ H D +E  +E+ L+YHSEK+A+AF LLNTPPG+TI + KN+R+CGDCH 
Sbjct: 545 GYVPDTSHVIVHVDQQE--REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHT 604

Query: 568 AAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           A KL S + GR+I++RD  RFH F+DG CSC D+
Sbjct: 605 AIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDY 632

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy TrEMBL
Match: A0A6J1HTT7 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467412 PE=3 SV=1)

HSP 1 Score: 1227.6 bits (3175), Expect = 0.0e+00
Identity = 597/597 (100.00%), Postives = 597/597 (100.00%), Query Frame = 0


Query: 1   MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK 60
           MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK
Sbjct: 1   MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK 60

Query: 61  LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120
           LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL
Sbjct: 61  LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120

Query: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180
           LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG
Sbjct: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180

Query: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240
           VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA
Sbjct: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240

Query: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300
           LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA
Sbjct: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300

Query: 301 YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP 360
           YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP
Sbjct: 301 YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP 360

Query: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420
           GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI
Sbjct: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420

Query: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480
           FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG
Sbjct: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480

Query: 481 DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540
           DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL
Sbjct: 481 DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540

Query: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF
Sbjct: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy TrEMBL
Match: A0A6J1FZ61 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449232 PE=3 SV=1)

HSP 1 Score: 1201.4 bits (3107), Expect = 0.0e+00
Identity = 585/597 (97.99%), Postives = 591/597 (98.99%), Query Frame = 0


Query: 1   MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK 60
           MAISCIPT QFAL+KPKNE INQPHPLSLFSKC SLRELKQIQAYTIKTNLHNDISVLTK
Sbjct: 1   MAISCIPTSQFALSKPKNESINQPHPLSLFSKCTSLRELKQIQAYTIKTNLHNDISVLTK 60

Query: 61  LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120
           LINFCTR PTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYL+FSLFAQVL SGL
Sbjct: 61  LINFCTRSPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLIFSLFAQVLFSGL 120

Query: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180
           LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG
Sbjct: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180

Query: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240
           VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA
Sbjct: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240

Query: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300
           LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA
Sbjct: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300

Query: 301 YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP 360
           +ATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLV+EG GYFYSMYKNHG+TP
Sbjct: 301 FATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVDEGTGYFYSMYKNHGITP 360

Query: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420
           GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI
Sbjct: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420

Query: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480
           FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG
Sbjct: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480

Query: 481 DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540
           DGVHSISVELRRALDELI+EIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL
Sbjct: 481 DGVHSISVELRRALDELIKEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540

Query: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF
Sbjct: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy TrEMBL
Match: A0A6J1DA68 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019083 PE=3 SV=1)

HSP 1 Score: 1105.9 bits (2859), Expect = 0.0e+00
Identity = 538/602 (89.37%), Postives = 559/602 (92.86%), Query Frame = 0


Query: 1   MAISCIPTCQFALTK-----PKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDI 60
           M ISCIP+CQF L K     P NEF N PHPL L SKC SLRELKQIQA+TIKTNL NDI
Sbjct: 1   MGISCIPSCQFTLAKPNSAFPNNEFTNPPHPLFLLSKCTSLRELKQIQAFTIKTNLQNDI 60

Query: 61  SVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQV 120
           SVLTK+INFCT  P+TSSMDHAHHLFD++ DKDIVLFNIMARGYARSN+PYL FSLF+QV
Sbjct: 61  SVLTKIINFCTLNPSTSSMDHAHHLFDQIPDKDIVLFNIMARGYARSNTPYLAFSLFSQV 120

Query: 121 LCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDM 180
           LCSGLLPDDYTFSSLLKACA SKA  EGRQLHCFAIKLG  HNIYICP+LIN+YA CNDM
Sbjct: 121 LCSGLLPDDYTFSSLLKACASSKAFSEGRQLHCFAIKLGLNHNIYICPSLINLYAECNDM 180

Query: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240
           NAARGVFD ME PCIVSYNAIITG+ARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC
Sbjct: 181 NAARGVFDEMEAPCIVSYNAIITGHARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWS 300
           ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGS+VDAISIFE MRVRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSLVDAISIFEDMRVRDTQAWS 300

Query: 301 AMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKN 360
           AMIVAYATHGDGLKAISMFEEMK+AGVRPDEITFLGLLYACSHAGLVEEGRGYF SM K 
Sbjct: 301 AMIVAYATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEEGRGYFNSMSKY 360

Query: 361 HGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKR 420
           +G+ PGIKHYGCMVDLLGRTG LDEAYKFID   IKPTPILWRTLLSACSN GNVDLAKR
Sbjct: 361 YGIAPGIKHYGCMVDLLGRTGHLDEAYKFIDGSEIKPTPILWRTLLSACSNRGNVDLAKR 420

Query: 421 VIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VIERIFELDDSHGGDYVILSNLCAR+GRWEDVN +RKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARVGRWEDVNHIRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLA 540
           EFFSGDGVHSISVELRRALDELI+EIKL GYVPDTSLVYHADMEEE KELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540

Query: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCC 598
           +AFGLLN+PPGT IRVVKNLRICGDCH AAKLIS IFGRQIVIRDVQRFHRFEDG+CSCC
Sbjct: 541 IAFGLLNSPPGTPIRVVKNLRICGDCHTAAKLISFIFGRQIVIRDVQRFHRFEDGKCSCC 600

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy TrEMBL
Match: A0A5A7STH8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00400 PE=3 SV=1)

HSP 1 Score: 1097.4 bits (2837), Expect = 0.0e+00
Identity = 529/603 (87.73%), Postives = 565/603 (93.70%), Query Frame = 0


Query: 1   MAISCIPTCQFALTKP-----KNEF-INQPHPLSLFSKCASLRELKQIQAYTIKTNLHND 60
           MAISCIPTCQF LTKP     KNEF INQ HPLSL SKC SL+ELKQIQAYTIKTNL +D
Sbjct: 1   MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSD 60

Query: 61  ISVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQ 120
           ISVLTKLINFCT  PTTS MDHAHHLFD++LDKDI+LFNIMARGYARSNSPYL FSLFAQ
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQ 120

Query: 121 VLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACND 180
           +LCSGLLPDDYTFSSLLKACA SKAL +G  LHCFA+KLG  HNIYICPTLINMYA CND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 181 MNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMS 240
           MNAARGVFD ME+PCIVSYNAIITGYARSSQPNEALSLFRELQAS++EPTDVTMLS+IMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMS 240

Query: 241 CALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAW 300
           CALLGALDLG+WIHEYVKKKGFDK+VKVNTALIDM+AKCGS+ DAISIFEGMRVRDTQAW
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 301 SAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYK 360
           SAMIVA+ATHGDGLK+IS+FEEMK+AGVRPDEITFLGLLYACSHAGLVE+GRGYFYSM +
Sbjct: 301 SAMIVAFATHGDGLKSISIFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSR 360

Query: 361 NHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAK 420
            +G+TPGIKHYGCMVDLLGRTG LDEAY F+DEL IKPTPILWRTLLSACS HGNV++AK
Sbjct: 361 TYGITPGIKHYGCMVDLLGRTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAK 420

Query: 421 RVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVV 480
           RVIERIFELDDSHGGDYVILSNL AR+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVV
Sbjct: 421 RVIERIFELDDSHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 481 HEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKL 540
           HEFFSGDGVH +SVELRRALDEL++EIKL GY+PDTSLVYHADM+EE KELVLRYHSEKL
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKL 540

Query: 541 AMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSC 598
           AMAFGLLNTPPGTTIRV KNLRICGDCHNAAKLIS IFGR+IVIRDVQRFH+FEDG+CSC
Sbjct: 541 AMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSC 600

[Close]

BLAST of CmaCh18G011490.1 vs. ExPASy TrEMBL
Match: A0A1S3BFK0 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489124 PE=3 SV=1)

HSP 1 Score: 1097.4 bits (2837), Expect = 0.0e+00
Identity = 529/603 (87.73%), Postives = 565/603 (93.70%), Query Frame = 0


Query: 1   MAISCIPTCQFALTKP-----KNEF-INQPHPLSLFSKCASLRELKQIQAYTIKTNLHND 60
           MAISCIPTCQF LTKP     KNEF INQ HPLSL SKC SL+ELKQIQAYTIKTNL +D
Sbjct: 1   MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSD 60

Query: 61  ISVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQ 120
           ISVLTKLINFCT  PTTS MDHAHHLFD++LDKDI+LFNIMARGYARSNSPYL FSLFAQ
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQ 120

Query: 121 VLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACND 180
           +LCSGLLPDDYTFSSLLKACA SKAL +G  LHCFA+KLG  HNIYICPTLINMYA CND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 181 MNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMS 240
           MNAARGVFD ME+PCIVSYNAIITGYARSSQPNEALSLFRELQAS++EPTDVTMLS+IMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMS 240

Query: 241 CALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAW 300
           CALLGALDLG+WIHEYVKKKGFDK+VKVNTALIDM+AKCGS+ DAISIFEGMRVRDTQAW
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 301 SAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYK 360
           SAMIVA+ATHGDGLK+IS+FEEMK+AGVRPDEITFLGLLYACSHAGLVE+GRGYFYSM +
Sbjct: 301 SAMIVAFATHGDGLKSISIFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSR 360

Query: 361 NHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAK 420
            +G+TPGIKHYGCMVDLLGRTG LDEAY F+DEL IKPTPILWRTLLSACS HGNV++AK
Sbjct: 361 TYGITPGIKHYGCMVDLLGRTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAK 420

Query: 421 RVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVV 480
           RVIERIFELDDSHGGDYVILSNL AR+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVV
Sbjct: 421 RVIERIFELDDSHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 481 HEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKL 540
           HEFFSGDGVH +SVELRRALDEL++EIKL GY+PDTSLVYHADM+EE KELVLRYHSEKL
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKL 540

Query: 541 AMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSC 598
           AMAFGLLNTPPGTTIRV KNLRICGDCHNAAKLIS IFGR+IVIRDVQRFH+FEDG+CSC
Sbjct: 541 AMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSC 600

[Close]

BLAST of CmaCh18G011490.1 vs. NCBI nr
Match: XP_022968061.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita maxima])

HSP 1 Score: 1227.6 bits (3175), Expect = 0.0e+00
Identity = 597/597 (100.00%), Postives = 597/597 (100.00%), Query Frame = 0


Query: 1   MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK 60
           MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK
Sbjct: 1   MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK 60

Query: 61  LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120
           LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL
Sbjct: 61  LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120

Query: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180
           LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG
Sbjct: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180

Query: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240
           VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA
Sbjct: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240

Query: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300
           LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA
Sbjct: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300

Query: 301 YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP 360
           YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP
Sbjct: 301 YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP 360

Query: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420
           GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI
Sbjct: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420

Query: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480
           FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG
Sbjct: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480

Query: 481 DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540
           DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL
Sbjct: 481 DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540

Query: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF
Sbjct: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597

[Close]

BLAST of CmaCh18G011490.1 vs. NCBI nr
Match: XP_023541252.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1208.4 bits (3125), Expect = 0.0e+00
Identity = 588/597 (98.49%), Postives = 593/597 (99.33%), Query Frame = 0


Query: 1   MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK 60
           MAISCIPT QFAL+KPKNEFINQPHPLSLFSKC+SLRELKQIQAYTIKTNLHNDISVLTK
Sbjct: 1   MAISCIPTSQFALSKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTK 60

Query: 61  LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120
           LINFCTR PT SSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL
Sbjct: 61  LINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120

Query: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180
           LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLG GHNIYICPTLINMYAACNDMNAARG
Sbjct: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARG 180

Query: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240
           VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA
Sbjct: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240

Query: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300
           LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA
Sbjct: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300

Query: 301 YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP 360
           +ATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHG+TP
Sbjct: 301 FATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGITP 360

Query: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420
           GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI
Sbjct: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420

Query: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480
           FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG
Sbjct: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480

Query: 481 DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540
           DGVHSISVELRRALDELI+EIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL
Sbjct: 481 DGVHSISVELRRALDELIKEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540

Query: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF
Sbjct: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597

[Close]

BLAST of CmaCh18G011490.1 vs. NCBI nr
Match: KAG6574081.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1206.8 bits (3121), Expect = 0.0e+00
Identity = 587/597 (98.32%), Postives = 591/597 (98.99%), Query Frame = 0


Query: 1   MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK 60
           MAISCIPT QFALTKPK EFINQPHPLSLFSKC SLRELKQIQAYTIKTNLHNDISVLTK
Sbjct: 1   MAISCIPTSQFALTKPKKEFINQPHPLSLFSKCTSLRELKQIQAYTIKTNLHNDISVLTK 60

Query: 61  LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120
           LINFCTR PTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL
Sbjct: 61  LINFCTRNPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120

Query: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180
           LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLG GHNIYICPTLINMYAACNDMNAARG
Sbjct: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARG 180

Query: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240
           VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA
Sbjct: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240

Query: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300
           LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA
Sbjct: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300

Query: 301 YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP 360
           +ATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLV+EGRGYFYSMYKNHG+TP
Sbjct: 301 FATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVDEGRGYFYSMYKNHGITP 360

Query: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420
           GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI
Sbjct: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420

Query: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480
           FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG
Sbjct: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480

Query: 481 DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540
           DGVHSISVELRRALDELI+EIKLAGY PDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL
Sbjct: 481 DGVHSISVELRRALDELIKEIKLAGYAPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540

Query: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF
Sbjct: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597

[Close]

BLAST of CmaCh18G011490.1 vs. NCBI nr
Match: KAG7013140.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1204.1 bits (3114), Expect = 0.0e+00
Identity = 586/597 (98.16%), Postives = 590/597 (98.83%), Query Frame = 0


Query: 1   MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK 60
           MAISCIPT QFALTKPK EFINQPHPLSLFSKC SLRELKQIQAYTIKTNLHNDISVLTK
Sbjct: 1   MAISCIPTSQFALTKPKKEFINQPHPLSLFSKCTSLRELKQIQAYTIKTNLHNDISVLTK 60

Query: 61  LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120
           LINFCTR PTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL
Sbjct: 61  LINFCTRNPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120

Query: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180
           LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLG GHNIYICPTLINMYAACNDMNAARG
Sbjct: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARG 180

Query: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240
           VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA
Sbjct: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240

Query: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300
           LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA
Sbjct: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300

Query: 301 YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP 360
           +ATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLV+EGRGYFYSMYKNHG+TP
Sbjct: 301 FATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVDEGRGYFYSMYKNHGITP 360

Query: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420
           GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI
Sbjct: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420

Query: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480
           FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGV KVPGCSSVEVNNVVHEFFSG
Sbjct: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVGKVPGCSSVEVNNVVHEFFSG 480

Query: 481 DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540
           DGVHSISVELRRALDELI+EIKLAGY PDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL
Sbjct: 481 DGVHSISVELRRALDELIKEIKLAGYAPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540

Query: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF
Sbjct: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597

[Close]

BLAST of CmaCh18G011490.1 vs. NCBI nr
Match: XP_022944804.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita moschata])

HSP 1 Score: 1201.4 bits (3107), Expect = 0.0e+00
Identity = 585/597 (97.99%), Postives = 591/597 (98.99%), Query Frame = 0


Query: 1   MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTK 60
           MAISCIPT QFAL+KPKNE INQPHPLSLFSKC SLRELKQIQAYTIKTNLHNDISVLTK
Sbjct: 1   MAISCIPTSQFALSKPKNESINQPHPLSLFSKCTSLRELKQIQAYTIKTNLHNDISVLTK 60

Query: 61  LINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 120
           LINFCTR PTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYL+FSLFAQVL SGL
Sbjct: 61  LINFCTRSPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLIFSLFAQVLFSGL 120

Query: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180
           LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG
Sbjct: 121 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARG 180

Query: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240
           VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA
Sbjct: 181 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 240

Query: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300
           LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA
Sbjct: 241 LDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVA 300

Query: 301 YATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTP 360
           +ATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLV+EG GYFYSMYKNHG+TP
Sbjct: 301 FATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVDEGTGYFYSMYKNHGITP 360

Query: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420
           GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI
Sbjct: 361 GIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERI 420

Query: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480
           FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG
Sbjct: 421 FELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 480

Query: 481 DGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540
           DGVHSISVELRRALDELI+EIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL
Sbjct: 481 DGVHSISVELRRALDELIKEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGL 540

Query: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF
Sbjct: 541 LNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597

[Close]

BLAST of CmaCh18G011490.1 vs. TAIR 10
Match: AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 835.1 bits (2156), Expect = 3.5e-242
Identity = 393/581 (67.64%), Postives = 477/581 (82.10%), Query Frame = 0


Query: 17  KNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTKLINFCTRYPTTSSMDH 76
           K + +N  +P+ L SKC SLREL QIQAY IK+++  D+S + KLINFCT  PT SSM +
Sbjct: 23  KIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHI-EDVSFVAKLINFCTESPTESSMSY 82

Query: 77  AHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAG 136
           A HLF+ M + DIV+FN MARGY+R  +P  VFSLF ++L  G+LPD+YTF SLLKACA 
Sbjct: 83  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 142

Query: 137 SKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAI 196
           +KALEEGRQLHC ++KLG   N+Y+CPTLINMY  C D+++AR VFD + EPC+V YNA+
Sbjct: 143 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 202

Query: 197 ITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGF 256
           ITGYAR ++PNEALSLFRE+Q   L+P ++T+LS++ SCALLG+LDLG+WIH+Y KK  F
Sbjct: 203 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 262

Query: 257 DKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEE 316
            K+VKVNTALIDM+AKCGS+ DA+SIFE MR +DTQAWSAMIVAYA HG   K++ MFE 
Sbjct: 263 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 322

Query: 317 MKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTG 376
           M+   V+PDEITFLGLL ACSH G VEEGR YF  M    G+ P IKHYG MVDLL R G
Sbjct: 323 MRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAG 382

Query: 377 RLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSN 436
            L++AY+FID+L I PTP+LWR LL+ACS+H N+DLA++V ERIFELDDSHGGDYVILSN
Sbjct: 383 NLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSN 442

Query: 437 LCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDE 496
           L AR  +WE V+ LRK+MKDR  VKVPGCSS+EVNNVVHEFFSGDGV S + +L RALDE
Sbjct: 443 LYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDE 502

Query: 497 LIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLR 556
           +++E+KL+GYVPDTS+V HA+M ++ KE+ LRYHSEKLA+ FGLLNTPPGTTIRVVKNLR
Sbjct: 503 MVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLR 562

Query: 557 ICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 598
           +C DCHNAAKLISLIFGR++V+RDVQRFH FEDG+CSC DF
Sbjct: 563 VCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDF 602

[Close]

BLAST of CmaCh18G011490.1 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 497.7 bits (1280), Expect = 1.3e-140
Identity = 240/548 (43.80%), Postives = 357/548 (65.15%), Query Frame = 0


Query: 52  HNDISVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSL 111
           H D+   T LI     Y +   +++A  LFD++  KD+V +N M  GYA + +      L
Sbjct: 197 HRDVVSYTALIK---GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 256

Query: 112 FAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAA 171
           F  ++ + + PD+ T  +++ ACA S ++E GRQ+H +    GFG N+ I   LI++Y+ 
Sbjct: 257 FKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 316

Query: 172 CNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSI 231
           C ++  A G+F+ +    ++S+N +I GY   +   EAL LF+E+  S   P DVTMLSI
Sbjct: 317 CGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 376

Query: 232 IMSCALLGALDLGRWIHEYVKK--KGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVR 291
           + +CA LGA+D+GRWIH Y+ K  KG      + T+LIDMYAKCG I  A  +F  +  +
Sbjct: 377 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 436

Query: 292 DTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYF 351
              +W+AMI  +A HG    +  +F  M+K G++PD+ITF+GLL ACSH+G+++ GR  F
Sbjct: 437 SLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIF 496

Query: 352 YSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGN 411
            +M +++ MTP ++HYGCM+DLLG +G   EA + I+ + ++P  ++W +LL AC  HGN
Sbjct: 497 RTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGN 556

Query: 412 VDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVE 471
           V+L +   E + +++  + G YV+LSN+ A  GRW +V + R L+ D+G+ KVPGCSS+E
Sbjct: 557 VELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIE 616

Query: 472 VNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRY 531
           +++VVHEF  GD  H  + E+   L+E+   ++ AG+VPDTS V   +MEEE KE  LR+
Sbjct: 617 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRH 676

Query: 532 HSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFED 591
           HSEKLA+AFGL++T PGT + +VKNLR+C +CH A KLIS I+ R+I+ RD  RFH F D
Sbjct: 677 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 736

Query: 592 GQCSCCDF 598
           G CSC D+
Sbjct: 737 GVCSCNDY 740

[Close]

BLAST of CmaCh18G011490.1 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 495.7 bits (1275), Expect = 5.1e-140
Identity = 244/621 (39.29%), Postives = 370/621 (59.58%), Query Frame = 0


Query: 8   TCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTKLINFCTR 67
           +C F+L        N    +S   +C+   ELKQI A  +KT L  D   +TK ++FC  
Sbjct: 5   SCSFSLEH------NLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCIS 64

Query: 68  YPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTF 127
             ++  + +A  +FD     D  L+N+M RG++ S+ P     L+ ++LCS    + YTF
Sbjct: 65  STSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTF 124

Query: 128 SSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEE 187
            SLLKAC+   A EE  Q+H    KLG+ +++Y   +LIN YA   +   A  +FD + E
Sbjct: 125 PSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPE 184

Query: 188 PCIVSYNAIITGYARSSQPN-------------------------------EALSLFREL 247
           P  VS+N++I GY ++ + +                               EAL LF E+
Sbjct: 185 PDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEM 244

Query: 248 QASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSI 307
           Q S++EP +V++ + + +CA LGAL+ G+WIH Y+ K        +   LIDMYAKCG +
Sbjct: 245 QNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEM 304

Query: 308 VDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYAC 367
            +A+ +F+ ++ +  QAW+A+I  YA HG G +AIS F EM+K G++P+ ITF  +L AC
Sbjct: 305 EEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTAC 364

Query: 368 SHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPIL 427
           S+ GLVEEG+  FYSM +++ + P I+HYGC+VDLLGR G LDEA +FI E+ +KP  ++
Sbjct: 365 SYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVI 424

Query: 428 WRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKD 487
           W  LL AC  H N++L + + E +  +D  HGG YV  +N+ A   +W+     R+LMK+
Sbjct: 425 WGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKE 484

Query: 488 RGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHA 547
           +GV KVPGCS++ +    HEF +GD  H    +++     + ++++  GYVP+   +   
Sbjct: 485 QGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLD 544

Query: 548 DMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQI 598
            ++++ +E ++  HSEKLA+ +GL+ T PGT IR++KNLR+C DCH   KLIS I+ R I
Sbjct: 545 LVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDI 604

[Close]

BLAST of CmaCh18G011490.1 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 486.9 bits (1252), Expect = 2.4e-137
Identity = 238/558 (42.65%), Postives = 356/558 (63.80%), Query Frame = 0


Query: 40  KQIQAYTIKTNLHNDISVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGY 99
           K+I  Y +++   + +++ T L++    Y    S++ A  LFD ML++++V +N M   Y
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDM---YAKCGSLETARQLFDGMLERNVVSWNSMIDAY 315

Query: 100 ARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNI 159
            ++ +P     +F ++L  G+ P D +    L ACA    LE GR +H  +++LG   N+
Sbjct: 316 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 375

Query: 160 YICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQAS 219
            +  +LI+MY  C +++ A  +F  ++   +VS+NA+I G+A++ +P +AL+ F ++++ 
Sbjct: 376 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 435

Query: 220 NLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDA 279
            ++P   T +S+I + A L      +WIH  V +   DK V V TAL+DMYAKCG+I+ A
Sbjct: 436 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 495

Query: 280 ISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHA 339
             IF+ M  R    W+AMI  Y THG G  A+ +FEEM+K  ++P+ +TFL ++ ACSH+
Sbjct: 496 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 555

Query: 340 GLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRT 399
           GLVE G   FY M +N+ +   + HYG MVDLLGR GRL+EA+ FI ++ +KP   ++  
Sbjct: 556 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 615

Query: 400 LLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGV 459
           +L AC  H NV+ A++  ER+FEL+   GG +V+L+N+      WE V ++R  M  +G+
Sbjct: 616 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 675

Query: 460 VKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADME 519
            K PGCS VE+ N VH FFSG   H  S ++   L++LI  IK AGYVPDT+LV    +E
Sbjct: 676 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLV--LGVE 735

Query: 520 EEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIR 579
            + KE +L  HSEKLA++FGLLNT  GTTI V KNLR+C DCHNA K ISL+ GR+IV+R
Sbjct: 736 NDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVR 795

Query: 580 DVQRFHRFEDGQCSCCDF 598
           D+QRFH F++G CSC D+
Sbjct: 796 DMQRFHHFKNGACSCGDY 808

[Close]

BLAST of CmaCh18G011490.1 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 481.1 bits (1237), Expect = 1.3e-135
Identity = 246/625 (39.36%), Postives = 371/625 (59.36%), Query Frame = 0


Query: 25  HPLSLF---SKCASLRELKQIQAYTIKTNLHNDISVLTKLINFC-TRYPTTSSMDHAHHL 84
           HP SLF   + C ++R+L QI A  IK+    D     +++ FC T       +D+AH +
Sbjct: 22  HPSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKI 81

Query: 85  FDKMLDKDIVLFNIMARGYARS--NSPYLVFSLFAQVLCSGLL-PDDYTFSSLLKACAGS 144
           F++M  ++   +N + RG++ S  +   +  +LF +++    + P+ +TF S+LKACA +
Sbjct: 82  FNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKT 141

Query: 145 KALEEGRQLHCFAIKLGFGHNIYICPTLINMYAAC------------------------- 204
             ++EG+Q+H  A+K GFG + ++   L+ MY  C                         
Sbjct: 142 GKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDR 201

Query: 205 --------------------NDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSL 264
                                D  AAR +FD M +  +VS+N +I+GY+ +    +A+ +
Sbjct: 202 RKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEV 261

Query: 265 FRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAK 324
           FRE++  ++ P  VT++S++ + + LG+L+LG W+H Y +  G      + +ALIDMY+K
Sbjct: 262 FREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSK 321

Query: 325 CGSIVDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGL 384
           CG I  AI +FE +   +   WSAMI  +A HG    AI  F +M++AGVRP ++ ++ L
Sbjct: 322 CGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381

Query: 385 LYACSHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKP 444
           L ACSH GLVEEGR YF  M    G+ P I+HYGCMVDLLGR+G LDEA +FI  + IKP
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441

Query: 445 TPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRK 504
             ++W+ LL AC   GNV++ KRV   + ++     G YV LSN+ A  G W +V+ +R 
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501

Query: 505 LMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSL 564
            MK++ + K PGCS ++++ V+HEF   D  H  + E+   L E+  +++LAGY P T+ 
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQ 561

Query: 565 VYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIF 598
           V   ++EEE KE VL YHSEK+A AFGL++T PG  IR+VKNLRIC DCH++ KLIS ++
Sbjct: 562 VL-LNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVY 621

The following BLAST results are available for this feature:

BLAST of CmaCh18G011490.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LK93	5.0e-241	67.64	Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop...	[more]
Q9LN01	1.9e-139	43.80	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9FJY7	7.1e-139	39.29	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
Q3E6Q1	3.3e-136	42.65	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
Q9LIQ7	3.7e-135	41.64	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]

BLAST of CmaCh18G011490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HTT7	0.0e+00	100.00	pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbit...	[more]
A0A6J1FZ61	0.0e+00	97.99	pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbit...	[more]
A0A6J1DA68	0.0e+00	89.37	pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 ...	[more]
A0A5A7STH8	0.0e+00	87.73	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BFK0	0.0e+00	87.73	pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucumis ...	[more]

BLAST of CmaCh18G011490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022968061.1	0.0e+00	100.00	pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita ...	[more]
XP_023541252.1	0.0e+00	98.49	pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita ...	[more]
KAG6574081.1	0.0e+00	98.32	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
KAG7013140.1	0.0e+00	98.16	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022944804.1	0.0e+00	97.99	pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita ...	[more]

BLAST of CmaCh18G011490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02980.1	3.5e-242	67.64	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G08070.1	1.3e-140	43.80	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G66520.1	5.1e-140	39.29	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G11290.1	2.4e-137	42.65	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G48910.1	1.3e-135	39.36	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 264..290 e-value: 0.0023 score: 16.0 coord: 293..326 e-value: 5.9E-7 score: 27.3 coord: 191..224 e-value: 1.8E-7 score: 28.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 290..336 e-value: 5.9E-10 score: 39.2 coord: 188..235 e-value: 4.3E-10 score: 39.6 coord: 87..135 e-value: 3.7E-7 score: 30.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 365..388 e-value: 0.063 score: 13.5 coord: 431..459 e-value: 0.16 score: 12.3 coord: 164..187 e-value: 0.93 score: 9.9 coord: 396..420 e-value: 0.12 score: 12.7 coord: 264..289 e-value: 0.0052 score: 17.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 290..324 score: 11.816339
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 189..223 score: 11.619036
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 88..122 score: 8.889672
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 25..141 e-value: 1.1E-15 score: 59.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 241..352 e-value: 2.0E-24 score: 88.6 coord: 353..494 e-value: 1.6E-15 score: 59.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 142..240 e-value: 1.1E-19 score: 72.5
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 463..588 e-value: 3.4E-38 score: 130.4
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 17..584
None	No IPR available	PANTHER	PTHR47926:SF132	BNAA02G26650D PROTEIN	coord: 17..584

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh18G011490	CmaCh18G011490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G011490.1:exon:2059	CmaCh18G011490.1:exon:2059	exon
CmaCh18G011490.1:exon:2058	CmaCh18G011490.1:exon:2058	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G011490.1:cds	CmaCh18G011490.1:cds_2	CDS
CmaCh18G011490.1:cds	CmaCh18G011490.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh18G011490.1	CmaCh18G011490.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900865	chloroplast RNA modification
biological_process	GO:0031425	chloroplast RNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding