CmaCh18G010120.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G010120.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	VQ motif-containing protein
Location	Cma_Chr18: 8481319 .. 8481793 (-)
Sequence length	294
RNA-Seq Expression	CmaCh18G010120.1
Synteny	CmaCh18G010120.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCGCCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACTCCGACAAAGCGCCGTCCGACAACAATGATTCCTCGTCGGTTGTGACGGATGAGGGCAGTAATTGTCCCTTGTTCACTCCTCGTTCTTTGGTTAATTCCTTGTCCCCTTCGTTCATGGAGTTTCTCAAAGGGCTGCCGGAATTTTAATTTAATGTTCATTAATTTGTGAAATGTTTATGAGAATTCAATTCATTCTTTGGGCCATATGGGGTTTTTTTTTTTTTTTTTTTTTTTGCAAGGTGCACTATGTATTAAAAGTACATAA

mRNA sequence

ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCGCCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACTCCGACAAAGCGCCGTCCGACAACAATGATTCCTCGTCGGTTGTGACGGATGAGGGCAGTGCACTATGTATTAAAAGTACATAA

Coding sequence (CDS)

ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCGCCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACTCCGACAAAGCGCCGTCCGACAACAATGATTCCTCGTCGGTTGTGACGGATGAGGGCAGTGCACTATGTATTAAAAGTACATAA

Protein sequence

MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNSDKAPSDNNDSSSVVTDEGSALCIKST

Homology

[Close]

BLAST of CmaCh18G010120.1 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-10
Identity = 41/92 (44.57%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 12  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P PP L ++K S  I+KP  P         R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  CSPPNSDKAPSDNNDSSSVVTDEGSALCIKST 98
            +  + D          + +TD G    I  T
Sbjct: 101 MTHSDEDLG------GGNAMTDPGVVKSINRT 126

[Close]

BLAST of CmaCh18G010120.1 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-09
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPK 60
          M P +   I+G RP  L L   S TI+K S     P P  R  PVIIY HSPK+IHT+ +
Sbjct: 1  MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61 DFMALVQRLTGCSPPNSDKAPSDNNDSSSVVTDE 89
          DFMALVQRLTG    +     + +  SSSVVT+E
Sbjct: 61 DFMALVQRLTGL---DEIIRRNTSESSSSVVTEE 91

[Close]

BLAST of CmaCh18G010120.1 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 9.5e-09
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 9  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDF 68
          I GPRP PL +HK S  I+KP            PPP + R PV+IY  SPK++H    +F
Sbjct: 24 ICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEF 83

[Close]

BLAST of CmaCh18G010120.1 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.9e-05
Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 4   PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYT 63
           P+ R   GP+P PL +   S  I K  P         PPQ  +           PV IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTQPKDFMALVQRLTG-----CSPPNSDKAPSDNNDSSSVV 86
            +P+IIHT P +FM LVQRLTG      +  +S  + S+  D+S++V
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMV 112

[Close]

BLAST of CmaCh18G010120.1 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 66/96 (68.75%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
          MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALV
Sbjct: 1  MSPAKSCDINGPRPSPLLIHKHSRLIRK--PPPQLRQPLIIYTHSPKIIHTQPKDFMALV 60

Query: 61 QRLTGCSPP------NSDKAPSDN--NDSSSVVTDE 89
          QRLTG +PP      +SD+  + N  NDSSSV+T+E
Sbjct: 61 QRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEE 94

[Close]

BLAST of CmaCh18G010120.1 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.9e-21
Identity = 63/98 (64.29%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
          MSPPK   I+GPRP PLL+H HSR IRK   P QLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1  MSPPKSSEINGPRPSPLLIHNHSRLIRK---PVQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61 QRLTGCSPPNSDKAPS----------DNNDSSSVVTDE 89
          QRLTGC+PP     PS          ++NDSSS VT E
Sbjct: 61 QRLTGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTE 95

[Close]

BLAST of CmaCh18G010120.1 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
          MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1  MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61 QRLTGCS-PPNSDKAPSDNNDSSSVVTDE 89
          QRLTG + PP   +  S++NDS+S VT E
Sbjct: 61 QRLTGFNPPPPQPERNSNDNDSTSGVTSE 85

[Close]

BLAST of CmaCh18G010120.1 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
          MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1  MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61 QRLTGCS-PPNSDKAPSDNNDSSSVVTDE 89
          QRLTG + PP   +  S++NDS+S VT E
Sbjct: 61 QRLTGFNPPPPQPERNSNDNDSTSGVTSE 85

[Close]

BLAST of CmaCh18G010120.1 vs. ExPASy TrEMBL
Match: A0A5B7CB42 (VQ domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_047863 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.8e-14
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 0


Query: 7   RHIHGPRPPPLLLHKHSRTIRKPS---PPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRL 66
           R IHGPRP PL ++K S  I+KP+      Q R PVIIYTHSPKIIHTQ +DFMALVQ+L
Sbjct: 15  RVIHGPRPSPLRINKDSHAIQKPAANHQQQQRRNPVIIYTHSPKIIHTQARDFMALVQKL 74

Query: 67  TGCSPPNSDKAP--SDNNDSSSVVTDE 89
           TG +   ++  P   ++N+SSSV+TDE
Sbjct: 75  TGQNSGENNLRPIIHEDNESSSVLTDE 101

[Close]

BLAST of CmaCh18G010120.1 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 1.8e-41
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
          MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV
Sbjct: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61 QRLTGCSPPNSDKAPSDNNDSSSVVTDEGS 91
          QRLTGCSPPN+DKAPSDNNDSSSVVT+E S
Sbjct: 61 QRLTGCSPPNADKAPSDNNDSSSVVTEEDS 90

[Close]

BLAST of CmaCh18G010120.1 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22
Identity = 66/96 (68.75%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
          MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALV
Sbjct: 1  MSPAKSCDINGPRPSPLLIHKHSRLIRK--PPPQLRQPLIIYTHSPKIIHTQPKDFMALV 60

Query: 61 QRLTGCSPP------NSDKAPSDN--NDSSSVVTDE 89
          QRLTG +PP      +SD+  + N  NDSSSV+T+E
Sbjct: 61 QRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEE 94

[Close]

BLAST of CmaCh18G010120.1 vs. NCBI nr
Match: KGN52621.2 (hypothetical protein Csa_008052 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 8.0e-21
Identity = 63/98 (64.29%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
          MSPPK   I+GPRP PLL+H HSR IRK   P QLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1  MSPPKSSEINGPRPSPLLIHNHSRLIRK---PVQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61 QRLTGCSPPNSDKAPS----------DNNDSSSVVTDE 89
          QRLTGC+PP     PS          ++NDSSS VT E
Sbjct: 61 QRLTGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTE 95

[Close]

BLAST of CmaCh18G010120.1 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
          MSPPK   I+GPRP PLL+HK SR IRK    PQLR+PVIIYTHSPKIIHTQPKDFMALV
Sbjct: 1  MSPPKSCEINGPRPSPLLIHKDSRFIRK----PQLRQPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61 QRLTGCSPPN------------SDKAPSDNNDSSSVVTDE 89
          QRLTG +PP             S++  +DN+ SS + T+E
Sbjct: 61 QRLTGFNPPPPPPPSNALSLSFSERNFNDNDSSSGLTTEE 96

[Close]

BLAST of CmaCh18G010120.1 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-18
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
          MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1  MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61 QRLTGCS-PPNSDKAPSDNNDSSSVVTDE 89
          QRLTG + PP   +  S++NDS+S VT E
Sbjct: 61 QRLTGFNPPPPQPERNSNDNDSTSGVTSE 85

[Close]

BLAST of CmaCh18G010120.1 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 67.4 bits (163), Expect = 7.2e-12
Identity = 41/92 (44.57%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 12  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P PP L ++K S  I+KP  P         R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  CSPPNSDKAPSDNNDSSSVVTDEGSALCIKST 98
            +  + D          + +TD G    I  T
Sbjct: 101 MTHSDEDLG------GGNAMTDPGVVKSINRT 126

[Close]

BLAST of CmaCh18G010120.1 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-10
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPK 60
          M P +   I+G RP  L L   S TI+K S     P P  R  PVIIY HSPK+IHT+ +
Sbjct: 1  MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61 DFMALVQRLTGCSPPNSDKAPSDNNDSSSVVTDE 89
          DFMALVQRLTG    +     + +  SSSVVT+E
Sbjct: 61 DFMALVQRLTGL---DEIIRRNTSESSSSVVTEE 91

[Close]

BLAST of CmaCh18G010120.1 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 60.8 bits (146), Expect = 6.8e-10
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 9  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDF 68
          I GPRP PL +HK S  I+KP            PPP + R PV+IY  SPK++H    +F
Sbjct: 24 ICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEF 83

[Close]

BLAST of CmaCh18G010120.1 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 43/109 (39.45%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 4   PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYT 63
           P+ R I GPRP PL +   S  I K  P         PPQ  +           PVIIYT
Sbjct: 6   PRSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYT 65

Query: 64  HSPKIIHTQPKDFMALVQRLTGCSPPNSDKAPSDNNDSSSVVTDEGSAL 93
            SP+IIHT P +FM LVQRLTG     S    S +  SS+    + S +
Sbjct: 66  VSPRIIHTHPNNFMTLVQRLTG---KTSTSTTSSSYSSSTSAPKDASTM 111

[Close]

BLAST of CmaCh18G010120.1 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-06
Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 4   PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYT 63
           P+ R   GP+P PL +   S  I K  P         PPQ  +           PV IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTQPKDFMALVQRLTG-----CSPPNSDKAPSDNNDSSSVV 86
            +P+IIHT P +FM LVQRLTG      +  +S  + S+  D+S++V
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMV 112

The following BLAST results are available for this feature:

BLAST of CmaCh18G010120.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	1.0e-10	44.57	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	3.3e-09	48.94	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8LGD5	9.5e-09	47.89	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	2.9e-05	36.45	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of CmaCh18G010120.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DC48	2.1e-22	68.75	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0KT78	3.9e-21	64.29	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A5D3CFH5	2.4e-18	64.04	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	2.4e-18	64.04	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5B7CB42	7.8e-14	57.47	VQ domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_047863 PE=4 ...	[more]

BLAST of CmaCh18G010120.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013019.1	1.8e-41	96.67	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_022150646.1	4.2e-22	68.75	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
KGN52621.2	8.0e-21	64.29	hypothetical protein Csa_008052 [Cucumis sativus]	[more]
XP_038893302.1	2.0e-19	61.00	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
XP_008466850.1	4.9e-18	64.04	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]

BLAST of CmaCh18G010120.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	7.2e-12	44.57	VQ motif-containing protein	[more]
AT1G68450.1	2.3e-10	48.94	VQ motif-containing protein	[more]
AT3G18690.1	6.8e-10	47.89	MAP kinase substrate 1	[more]
AT1G21326.1	1.1e-07	39.45	VQ motif-containing protein	[more]
AT1G21320.1	2.0e-06	36.45	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..69 e-value: 2.0E-12 score: 46.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..97
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 7..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh18G010120	CmaCh18G010120	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G010120.1:exon:756	CmaCh18G010120.1:exon:756	exon
CmaCh18G010120.1:exon:757	CmaCh18G010120.1:exon:757	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G010120.1:cds	CmaCh18G010120.1:cds_2	CDS
CmaCh18G010120.1:cds	CmaCh18G010120.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh18G010120.1	CmaCh18G010120.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding