CmaCh18G006490.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G006490.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein of unknown function, DUF584
Location	Cma_Chr18: 5914160 .. 5914891 (+)
Sequence length	732
RNA-Seq Expression	CmaCh18G006490.1
Synteny	CmaCh18G006490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTCTCCCCTCCTTCCTCCCGTTTCCGCCACCGGAAATCCCCCCCCTCCGAGCGCTTCCTTCTCTCCTTCTCTTCTCCCTCCCCCCGCCCTTCTAACCCTACCTCCGCCAACGCCCTCGACGACGACAACAACAGCGAGCTCAACGAGGACGACGTCTTCTGGACTGGCGATTTCGCCGCTGATTCTGCCCACCATACCCACTCCACTCCCTCCTCCTCCTCCTCCTCCACTCCTCGCCACCATATTCATCACCTCCAGCATCACAAGGGCTTCCCCCAGTCTGAGACCTTCGGTATTCTCGCTGCCCTCCCTGAGAACGAGGCCTCCTCCAGCCTTCGGAACTCCTCGCATTTCTACCACAAGGCCTCCGTTTCCTCCTCCTCTTCCTCTTCCCCTTCCTCTTCGCGGATGATTCCGACGATCCCTAAACCTCCTCTCGAGCGGTTGCCCTTGACGATTTCTTCCTCGTTGAAGTACCAGTCCGCTCCGGTCAATGTGCCAATGATGTCCAAGGCGGCGGTTCAGAGACACCAAGAGATAGATGTGGATGATGTTGATGAAAGTGATGGGGAGATGTTGCCGCCTCATGAAATTGTCGCTAGAAGTTTGGCTCAATCGCCATTGTTGTCTTGCTCCGTGCTTGAGGGTGCTGGAAGGACGTTAAAGGGCAGGGATCTTCGCCAGGTTCGAAATGCTGTTTGGAGACGAACAGGTTTTCTTGATTAA

mRNA sequence

ATGGAGCTCTCCCCTCCTTCCTCCCGTTTCCGCCACCGGAAATCCCCCCCCTCCGAGCGCTTCCTTCTCTCCTTCTCTTCTCCCTCCCCCCGCCCTTCTAACCCTACCTCCGCCAACGCCCTCGACGACGACAACAACAGCGAGCTCAACGAGGACGACGTCTTCTGGACTGGCGATTTCGCCGCTGATTCTGCCCACCATACCCACTCCACTCCCTCCTCCTCCTCCTCCTCCACTCCTCGCCACCATATTCATCACCTCCAGCATCACAAGGGCTTCCCCCAGTCTGAGACCTTCGGTATTCTCGCTGCCCTCCCTGAGAACGAGGCCTCCTCCAGCCTTCGGAACTCCTCGCATTTCTACCACAAGGCCTCCGTTTCCTCCTCCTCTTCCTCTTCCCCTTCCTCTTCGCGGATGATTCCGACGATCCCTAAACCTCCTCTCGAGCGGTTGCCCTTGACGATTTCTTCCTCGTTGAAGTACCAGTCCGCTCCGGTCAATGTGCCAATGATGTCCAAGGCGGCGGTTCAGAGACACCAAGAGATAGATGTGGATGATGTTGATGAAAGTGATGGGGAGATGTTGCCGCCTCATGAAATTGTCGCTAGAAGTTTGGCTCAATCGCCATTGTTGTCTTGCTCCGTGCTTGAGGGTGCTGGAAGGACGTTAAAGGGCAGGGATCTTCGCCAGGTTCGAAATGCTGTTTGGAGACGAACAGGTTTTCTTGATTAA

Coding sequence (CDS)

ATGGAGCTCTCCCCTCCTTCCTCCCGTTTCCGCCACCGGAAATCCCCCCCCTCCGAGCGCTTCCTTCTCTCCTTCTCTTCTCCCTCCCCCCGCCCTTCTAACCCTACCTCCGCCAACGCCCTCGACGACGACAACAACAGCGAGCTCAACGAGGACGACGTCTTCTGGACTGGCGATTTCGCCGCTGATTCTGCCCACCATACCCACTCCACTCCCTCCTCCTCCTCCTCCTCCACTCCTCGCCACCATATTCATCACCTCCAGCATCACAAGGGCTTCCCCCAGTCTGAGACCTTCGGTATTCTCGCTGCCCTCCCTGAGAACGAGGCCTCCTCCAGCCTTCGGAACTCCTCGCATTTCTACCACAAGGCCTCCGTTTCCTCCTCCTCTTCCTCTTCCCCTTCCTCTTCGCGGATGATTCCGACGATCCCTAAACCTCCTCTCGAGCGGTTGCCCTTGACGATTTCTTCCTCGTTGAAGTACCAGTCCGCTCCGGTCAATGTGCCAATGATGTCCAAGGCGGCGGTTCAGAGACACCAAGAGATAGATGTGGATGATGTTGATGAAAGTGATGGGGAGATGTTGCCGCCTCATGAAATTGTCGCTAGAAGTTTGGCTCAATCGCCATTGTTGTCTTGCTCCGTGCTTGAGGGTGCTGGAAGGACGTTAAAGGGCAGGGATCTTCGCCAGGTTCGAAATGCTGTTTGGAGACGAACAGGTTTTCTTGATTAA

Protein sequence

MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDFAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHFYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD

Homology

[Close]

BLAST of CmaCh18G006490.1 vs. ExPASy TrEMBL
Match: A0A6J1HPU4 (uncharacterized protein LOC111466606 OS=Cucurbita maxima OX=3661 GN=LOC111466606 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60
           MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF
Sbjct: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60

Query: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120
           AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF
Sbjct: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120

Query: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180
           YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ
Sbjct: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180

Query: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240
           EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG
Sbjct: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240

Query: 241 FLD 244
           FLD
Sbjct: 241 FLD 243

[Close]

BLAST of CmaCh18G006490.1 vs. ExPASy TrEMBL
Match: A0A6J1G2B0 (uncharacterized protein LOC111450033 OS=Cucurbita moschata OX=3662 GN=LOC111450033 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 4.0e-123
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALD-DDNNSELNEDDVFWTGD 60
           M+L+PPSSRFRHRKSP SERFLLSFSSPSPRPSNPTSANALD DDNNSELNEDDVFWTGD
Sbjct: 1   MDLTPPSSRFRHRKSPSSERFLLSFSSPSPRPSNPTSANALDNDDNNSELNEDDVFWTGD 60

Query: 61  FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSH 120
           FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSS+
Sbjct: 61  FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSY 120

Query: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRH 180
           FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPL ISSSLKYQSAPVNVPMMSKAAVQRH
Sbjct: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPMMSKAAVQRH 180

Query: 181 QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRT 240
           QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRT
Sbjct: 181 QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRT 240

Query: 241 GFLD 244
           GFLD
Sbjct: 241 GFLD 244

[Close]

BLAST of CmaCh18G006490.1 vs. ExPASy TrEMBL
Match: A0A0A0LT40 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165750 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.2e-108
Identity = 213/243 (87.65%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60
           M+L+ PSSRFRHR SP SERFL SF SP  R SNP+S  ALDDD  SELNEDDVFWTGDF
Sbjct: 1   MDLNLPSSRFRHRNSPSSERFLASFPSPPVRSSNPSSTTALDDD--SELNEDDVFWTGDF 60

Query: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120
           A+DS HH+HSTPSSSSSSTPRHHIHHLQHHKGFP  ETFGILAALPENEASSSLRNSSHF
Sbjct: 61  ASDSVHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHF 120

Query: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180
           YHKASVSSSSSSSPSSSRMIPTIPKPPL+RLPL IS+SLKYQSAPVNVP+MSKA VQR  
Sbjct: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQL 180

Query: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240
           E+DVDDVDE DGEMLPPHEIVARSLAQSP+LSCSVLEGAGRTLKGRDLRQVRNAVWRRTG
Sbjct: 181 EVDVDDVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240

Query: 241 FLD 244
           FLD
Sbjct: 241 FLD 241

[Close]

BLAST of CmaCh18G006490.1 vs. ExPASy TrEMBL
Match: A0A1S4E4F1 (uncharacterized protein LOC103499884 OS=Cucumis melo OX=3656 GN=LOC103499884 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106
Identity = 211/243 (86.83%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60
           M+L+  SSRFRHR SP SERFL SF SP  R SNP+S  ALDDD  SELNEDDVFWTGDF
Sbjct: 1   MDLNLHSSRFRHRNSPSSERFLASFPSPPVRTSNPSSTTALDDD--SELNEDDVFWTGDF 60

Query: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120
           A+DS HH+HSTPSSSSSSTPRHHIHHLQHHKGFP  ETFGILAALPENEASSSLRNSSHF
Sbjct: 61  ASDSVHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHF 120

Query: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180
           YHKASVSSSSSSSPSSSRMIPTIPKPPL+RLPL IS+SLKYQSAPVNVP+MSKA VQR  
Sbjct: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQL 180

Query: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240
           E+DVD VDE DGEMLPPHEIVARSLAQSP+LSCSVLEGAGRTLKGRDLRQVRNAVWRRTG
Sbjct: 181 EVDVDYVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240

Query: 241 FLD 244
           FLD
Sbjct: 241 FLD 241

[Close]

BLAST of CmaCh18G006490.1 vs. ExPASy TrEMBL
Match: A0A5A7SY45 (Senescence regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002880 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106
Identity = 211/243 (86.83%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60
           M+L+  SSRFRHR SP SERFL SF SP  R SNP+S  ALDDD  SELNEDDVFWTGDF
Sbjct: 1   MDLNLHSSRFRHRNSPSSERFLASFPSPPVRTSNPSSTTALDDD--SELNEDDVFWTGDF 60

Query: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120
           A+DS HH+HSTPSSSSSSTPRHHIHHLQHHKGFP  ETFGILAALPENEASSSLRNSSHF
Sbjct: 61  ASDSVHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHF 120

Query: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180
           YHKASVSSSSSSSPSSSRMIPTIPKPPL+RLPL IS+SLKYQSAPVNVP+MSKA VQR  
Sbjct: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLDRLPLPISTSLKYQSAPVNVPIMSKAVVQRQL 180

Query: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240
           E+DVD VDE DGEMLPPHEIVARSLAQSP+LSCSVLEGAGRTLKGRDLRQVRNAVWRRTG
Sbjct: 181 EVDVDYVDEDDGEMLPPHEIVARSLAQSPMLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240

Query: 241 FLD 244
           FLD
Sbjct: 241 FLD 241

[Close]

BLAST of CmaCh18G006490.1 vs. NCBI nr
Match: XP_022967102.1 (uncharacterized protein LOC111466606 [Cucurbita maxima])

HSP 1 Score: 465.3 bits (1196), Expect = 3.2e-127
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60
           MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF
Sbjct: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60

Query: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120
           AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF
Sbjct: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120

Query: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180
           YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ
Sbjct: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180

Query: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240
           EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG
Sbjct: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240

Query: 241 FLD 244
           FLD
Sbjct: 241 FLD 243

[Close]

BLAST of CmaCh18G006490.1 vs. NCBI nr
Match: XP_022945942.1 (uncharacterized protein LOC111450033 [Cucurbita moschata])

HSP 1 Score: 450.7 bits (1158), Expect = 8.2e-123
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALD-DDNNSELNEDDVFWTGD 60
           M+L+PPSSRFRHRKSP SERFLLSFSSPSPRPSNPTSANALD DDNNSELNEDDVFWTGD
Sbjct: 1   MDLTPPSSRFRHRKSPSSERFLLSFSSPSPRPSNPTSANALDNDDNNSELNEDDVFWTGD 60

Query: 61  FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSH 120
           FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSS+
Sbjct: 61  FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSY 120

Query: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRH 180
           FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPL ISSSLKYQSAPVNVPMMSKAAVQRH
Sbjct: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPMMSKAAVQRH 180

Query: 181 QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRT 240
           QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRT
Sbjct: 181 QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRT 240

Query: 241 GFLD 244
           GFLD
Sbjct: 241 GFLD 244

[Close]

BLAST of CmaCh18G006490.1 vs. NCBI nr
Match: XP_023522766.1 (uncharacterized protein LOC111786770 [Cucurbita pepo subsp. pepo] >XP_023542094.1 uncharacterized protein LOC111802081 [Cucurbita pepo subsp. pepo] >XP_023542448.1 uncharacterized protein LOC111802350 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444.1 bits (1141), Expect = 7.6e-121
Identity = 233/238 (97.90%), Postives = 234/238 (98.32%), Query Frame = 0


Query: 6   PSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDFAADSA 65
           PSSRFRHRKSP SERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDFAADS 
Sbjct: 5   PSSRFRHRKSPSSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDFAADST 64

Query: 66  HHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHFYHKAS 125
           HHTHSTPSSSSSSTPRHHIHHLQHHK FPQSETFGILAALPENEASSSLRNSS+FYHKAS
Sbjct: 65  HHTHSTPSSSSSSTPRHHIHHLQHHKAFPQSETFGILAALPENEASSSLRNSSYFYHKAS 124

Query: 126 VSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQEIDVD 185
           VSSSSSSSPSSSRMIPTIPKPPLERLPL ISSSLKYQSAPVNVPMMSKAAVQRHQEIDVD
Sbjct: 125 VSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPMMSKAAVQRHQEIDVD 184

Query: 186 DVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 244
           DVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD
Sbjct: 185 DVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 242

[Close]

BLAST of CmaCh18G006490.1 vs. NCBI nr
Match: KAG6573630.1 (hypothetical protein SDJN03_27517, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 423.3 bits (1087), Expect = 1.4e-114
Identity = 227/237 (95.78%), Postives = 231/237 (97.47%), Query Frame = 0


Query: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALD-DDNNSELNEDDVFWTGD 60
           M+L+PPSSRFRHRKSP SERFLLSFSSPSPRPSNPTSANALD DDNNSELNEDDVFWTGD
Sbjct: 1   MDLTPPSSRFRHRKSPSSERFLLSFSSPSPRPSNPTSANALDNDDNNSELNEDDVFWTGD 60

Query: 61  FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSH 120
           FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSS+
Sbjct: 61  FAADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSY 120

Query: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRH 180
           FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPL ISSSLKYQSAPVNVPMMSKAAVQRH
Sbjct: 121 FYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPMMSKAAVQRH 180

Query: 181 QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVW 237
           QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQ   +VW
Sbjct: 181 QEIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQ-SASVW 236

[Close]

BLAST of CmaCh18G006490.1 vs. NCBI nr
Match: XP_038894579.1 (uncharacterized protein LOC120083099 [Benincasa hispida])

HSP 1 Score: 408.3 bits (1048), Expect = 4.7e-110
Identity = 217/243 (89.30%), Postives = 225/243 (92.59%), Query Frame = 0


Query: 1   MELSPPSSRFRHRKSPPSERFLLSFSSPSPRPSNPTSANALDDDNNSELNEDDVFWTGDF 60
           M+L+ PS RFRHRKSP SERFL SF SP  R +NP+S N +DDD  +ELNEDDVFWTGDF
Sbjct: 1   MDLNLPSFRFRHRKSPSSERFLASFHSPPVRTANPSSTNGVDDD--TELNEDDVFWTGDF 60

Query: 61  AADSAHHTHSTPSSSSSSTPRHHIHHLQHHKGFPQSETFGILAALPENEASSSLRNSSHF 120
           AADSAHH+HSTPSSSSSSTPRHHIHHLQHHKGFP  ETFGILAALPENEASSSLRNSSHF
Sbjct: 61  AADSAHHSHSTPSSSSSSTPRHHIHHLQHHKGFPLPETFGILAALPENEASSSLRNSSHF 120

Query: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQSAPVNVPMMSKAAVQRHQ 180
           YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPL ISSSLKYQSAPVNVP+MSKA VQR Q
Sbjct: 121 YHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLPISSSLKYQSAPVNVPIMSKAVVQRQQ 180

Query: 181 EIDVDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240
           EIDVDDVDE DGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG
Sbjct: 181 EIDVDDVDEDDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTG 240

Query: 241 FLD 244
           FLD
Sbjct: 241 FLD 241

[Close]

BLAST of CmaCh18G006490.1 vs. TAIR 10
Match: AT3G15040.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 165.6 bits (418), Expect = 4.9e-41
Identity = 124/240 (51.67%), Postives = 147/240 (61.25%), Query Frame = 0


Query: 33  SNPTSANALDDDNNSELNEDDVFWTGDFAADSAHHTHSTPSSSSSSTPRHH--IHHLQHH 92
           S+P+S   + D  + ELNEDD+     FA D +H       S  SS  +       LQ  
Sbjct: 10  SSPSSLATISDSADGELNEDDI-----FAIDISHAPPQARHSPVSSPAKQQTPARQLQRS 69

Query: 93  K-GFPQSETFGILAALPENEASSSLRNSSHFYHK----------ASVSSSSSS------- 152
           K G    E  GILAALPE+  SSS   S  F+HK          ++ SSSSSS       
Sbjct: 70  KSGLKNVEASGILAALPESSGSSSYL-SHVFHHKPAAALSTSVSSTASSSSSSGGGASAG 129

Query: 153 SPSSSRMIPTIPKPPLERLPLTIS--SSLKY-QSAPVNVPMMSKAAVQRHQ------EID 212
           S SS+R IPT PKPP ERLP + S     KY QSAPV VP++S A + RH+      ++ 
Sbjct: 130 SSSSARAIPTAPKPPQERLPFSASFVGGGKYPQSAPVQVPLVSSAMMNRHKKEFKLTDVV 189

Query: 213 VDDVDESDGEMLPPHEIVARSLAQSPLLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 244
            DD +E +GEMLPPHEIVARSLAQS LLSCSVLEGAGRTLKGRDLRQVRNAV+RRTGF+D
Sbjct: 190 DDDEEEEEGEMLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243

[Close]

BLAST of CmaCh18G006490.1 vs. TAIR 10
Match: AT4G04630.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-16
Identity = 65/154 (42.21%), Postives = 82/154 (53.25%), Query Frame = 0


Query: 101 ILAALPENEASSSLRN--SSHFYHKASVSSSSSSSPSSSRMIPTIPKPPLERLPLTISSS 160
           + + L E E SS       SHF    S SSSSSSSP + R    +             S 
Sbjct: 32  VWSVLREGETSSPEMKIPKSHF----SSSSSSSSSPWNIRRSKEV-------------SG 91

Query: 161 LKYQSAPVNVPMMSKA---------AVQRHQEIDVDDVDESDGEMLPPHEIVARSLAQSP 220
           +K  SAP+NVP  SK          +   H     DD ++ DG M+PPHE VAR LA++ 
Sbjct: 92  VKQSSAPMNVPDWSKVYGDSKSNRRSSHLHSHAADDDDEDDDGCMVPPHEWVARKLARTQ 151

Query: 221 LLSCSVLEGAGRTLKGRDLRQVRNAVWRRTGFLD 244
           + S S+ EG GRTLKGRDL +VRNAV  +TGFL+
Sbjct: 152 ISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168

[Close]

BLAST of CmaCh18G006490.1 vs. TAIR 10
Match: AT4G21970.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-14
Identity = 61/148 (41.22%), Postives = 80/148 (54.05%), Query Frame = 0


Query: 107 ENEASSSLRNSSHFYHKASVSSS----SSSSPSSSRMIPTIPKPPLERLPLTISSSLKYQ 166
           E E  S LR S     +  +S S    S+SS SS+R IP   +         +S   K  
Sbjct: 9   EEEVWSVLRESETQGPEMKMSKSNNLFSASSSSSARYIPKGNE---------VSGGAKQS 68

Query: 167 SAPVNVPMMSKAAVQRHQEID-------VDDVDESDGEMLPPHEIVARSLAQSPLLSCSV 226
           SAP+N+P  SK      +          +DD DE  G M+PPHE+VA+ LA++ + S S+
Sbjct: 69  SAPMNIPDWSKVYGYSKKNTSSHLHSWAIDDDDE--GSMVPPHELVAKRLARTQISSFSM 128

Query: 227 LEGAGRTLKGRDLRQVRNAVWRRTGFLD 244
            EG GRTLKGRDL + RNAV  RTGFL+
Sbjct: 129 CEGIGRTLKGRDLSKTRNAVLTRTGFLE 145

[Close]

BLAST of CmaCh18G006490.1 vs. TAIR 10
Match: AT1G61930.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-13
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 163 SAPVNVPMMSKA----AVQRHQEIDVDDVDESDGEMLPPHEIVARSLAQSPLL----SCS 222
           SAPVNVP  SK     +V+   E+D +D ++ +  M+PPHE +A+S A+          S
Sbjct: 115 SAPVNVPDWSKIYRVDSVESIHELDDEDDEDEESGMMPPHEYLAKSQARRSRKIGGGGAS 174

Query: 223 VLEGAGRTLKGRDLRQVRNAVWRRTGF 242
           V +G GRTLKGR+LR+VR+A+W +TGF
Sbjct: 175 VFDGVGRTLKGRELRRVRDAIWSQTGF 201

[Close]

BLAST of CmaCh18G006490.1 vs. TAIR 10
Match: AT1G11700.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-12
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 163 SAPVNVPMMSKA----AVQRHQEIDVDDVDESDGEMLPPHEIVARSLAQSPLLS---CSV 222
           SAPVNVP  SK     +V+   E D ++ +E  G M+PPHE +A+S  +    S    SV
Sbjct: 115 SAPVNVPDWSKIYRVNSVESIHESD-EEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSV 174

Query: 223 LEGAGRTLKGRDLRQVRNAVWRRTGF 242
            EG GRTLKGR+LR+VR+A+W +TGF
Sbjct: 175 FEGVGRTLKGRELRRVRDAIWSQTGF 199

The following BLAST results are available for this feature:

BLAST of CmaCh18G006490.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G006490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HPU4	1.6e-127	100.00	uncharacterized protein LOC111466606 OS=Cucurbita maxima OX=3661 GN=LOC111466606...	[more]
A0A6J1G2B0	4.0e-123	97.54	uncharacterized protein LOC111450033 OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]
A0A0A0LT40	1.2e-108	87.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165750 PE=4 SV=1	[more]
A0A1S4E4F1	1.5e-106	86.83	uncharacterized protein LOC103499884 OS=Cucumis melo OX=3656 GN=LOC103499884 PE=...	[more]
A0A5A7SY45	1.5e-106	86.83	Senescence regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455...	[more]

BLAST of CmaCh18G006490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967102.1	3.2e-127	100.00	uncharacterized protein LOC111466606 [Cucurbita maxima]	[more]
XP_022945942.1	8.2e-123	97.54	uncharacterized protein LOC111450033 [Cucurbita moschata]	[more]
XP_023522766.1	7.6e-121	97.90	uncharacterized protein LOC111786770 [Cucurbita pepo subsp. pepo] >XP_023542094....	[more]
KAG6573630.1	1.4e-114	95.78	hypothetical protein SDJN03_27517, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038894579.1	4.7e-110	89.30	uncharacterized protein LOC120083099 [Benincasa hispida]	[more]

BLAST of CmaCh18G006490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15040.1	4.9e-41	51.67	Protein of unknown function, DUF584	[more]
AT4G04630.1	2.4e-16	42.21	Protein of unknown function, DUF584	[more]
AT4G21970.1	3.0e-14	41.22	Protein of unknown function, DUF584	[more]
AT1G61930.1	3.3e-13	45.98	Protein of unknown function, DUF584	[more]
AT1G11700.1	3.7e-12	48.84	Protein of unknown function, DUF584	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007608	Senescence regulator S40	PFAM	PF04520	Senescence_reg	coord: 47..243 e-value: 1.6E-44 score: 152.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..139
None	No IPR available	PANTHER	PTHR33083	EXPRESSED PROTEIN	coord: 5..243
None	No IPR available	PANTHER	PTHR33083:SF50	SUBFAMILY NOT NAMED	coord: 5..243

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh18G006490	CmaCh18G006490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G006490.1:exon:1986	CmaCh18G006490.1:exon:1986	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G006490.1:cds	CmaCh18G006490.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh18G006490.1	CmaCh18G006490.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding