CmaCh18G005850.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G005850.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RPM1-interacting protein 4-like
Location	Cma_Chr18: 4049110 .. 4049784 (-)
Sequence length	594
RNA-Seq Expression	CmaCh18G005850.1
Synteny	CmaCh18G005850.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGAGTAATTTTTTTTTTTTTTTTTTCACTAAAATTAATTCATAGATTATTAGAAACTAATTTTTTTTATTCATATGGTAGGGGGCAAACTCGTCAATTCACGTTCCCAAATTCGGAAATTGGGACACCGACGACGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGAGGTCTTCAAGCCAGCCGCGCACAACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATGAACTCAGGATCGGAGAAATTGAGCAGCGAGAGAAGCGGCTCCAATTACGCACTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCTGTGGCCGGACATGGCGTAAACCCTAAGCCGGTGACGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAAGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGGCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACCAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

mRNA sequence

ATGGCAGGGGCAAACTCGTCAATTCACGTTCCCAAATTCGGAAATTGGGACACCGACGACGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGAGGTCTTCAAGCCAGCCGCGCACAACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATGAACTCAGGATCGGAGAAATTGAGCAGCGAGAGAAGCGGCTCCAATTACGCACTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCTGTGGCCGGACATGGCGTAAACCCTAAGCCGGTGACGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAAGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGGCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACCAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

Coding sequence (CDS)

ATGGCAGGGGCAAACTCGTCAATTCACGTTCCCAAATTCGGAAATTGGGACACCGACGACGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGAGGTCTTCAAGCCAGCCGCGCACAACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATGAACTCAGGATCGGAGAAATTGAGCAGCGAGAGAAGCGGCTCCAATTACGCACTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCTGTGGCCGGACATGGCGTAAACCCTAAGCCGGTGACGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAAGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGGCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACCAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

Protein sequence

MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNGGEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHGVNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNTTSGFTSFASKVPT

Homology

[Close]

BLAST of CmaCh18G005850.1 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-14
Identity = 71/209 (33.97%), Postives = 95/209 (45.45%), Query Frame = 0


Query: 9   HVPKFGNWDTDD-VPYTICFENARELRAAGI-TFDPNDPD----------TYPPEV-FKP 68
           +VPKFGNW+ ++ VPYT  F+ AR+ RA G    +PNDP+           +PP    KP
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 69  ----AAHNGGEHQRRPRQQPNRERGAIMNSGSE-------KLSSERSGSNYALLKKSKEN 128
                     EH R   +   ++ G    S +E       + S   S  N + L K+  +
Sbjct: 65  EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYD 124

Query: 129 GVEGISRLAPAVAGHGVNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAA-- 188
           G  G SR  P       +P+ VT  VPKFG WD  +P S DGYT IFNK++ E+   A  
Sbjct: 125 GT-GKSRPKPTNLRADESPEKVTV-VPKFGDWDENNPSSADGYTHIFNKVREERSSGANV 184

Query: 189 SNPQAVPPLMNKTKQPIAHTNTTSGFTSF 192
           S     P     T Q   + N TS    F
Sbjct: 185 SGSSRTP-----THQSSRNPNNTSSCCCF 206

[Close]

BLAST of CmaCh18G005850.1 vs. ExPASy Swiss-Prot
Match: Q8S3M3 (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.9e-05
Identity = 21/59 (35.59%), Postives = 30/59 (50.85%), Query Frame = 0


Query: 9  HVPKFGNWDTDDVPYTICFENARELRAAGI-TFDPNDPDTYPPEVFKPAAHNGGEHQRR 67
          HVPKFGNWD +++ YT  FE     +  G   F+PNDP+  P   +        +H  +
Sbjct: 6  HVPKFGNWDGENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAFYPRTVAQDHQHSEK 64

[Close]

BLAST of CmaCh18G005850.1 vs. ExPASy TrEMBL
Match: A0A6J1JVE9 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 9.4e-107
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60
           MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG
Sbjct: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60

Query: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180
           VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA
Sbjct: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180

Query: 181 HTNTTSGFTSFASKV 196
           HTNTTSGFTSFASK+
Sbjct: 181 HTNTTSGFTSFASKI 195

[Close]

BLAST of CmaCh18G005850.1 vs. ExPASy TrEMBL
Match: A0A6J1GSU2 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.0e-98
Identity = 181/195 (92.82%), Postives = 187/195 (95.90%), Query Frame = 0


Query: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60
           MAGA SS HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKP AH+G
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAI+NSGSEKLSSERSGS+YALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180
            NP    ASVPKFGSWDA+DPKSGDGYTAIFNKMKIEKQIAASNPQ+VPPLMNKTKQPIA
Sbjct: 121 GNP----ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIA 180

Query: 181 HTNTTSGFTSFASKV 196
           HTNTTSGFTSFASK+
Sbjct: 181 HTNTTSGFTSFASKI 191

[Close]

BLAST of CmaCh18G005850.1 vs. ExPASy TrEMBL
Match: A0A6J1CND0 (RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.4e-62
Identity = 140/218 (64.22%), Postives = 154/218 (70.64%), Query Frame = 0


Query: 4   ANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNGG-- 63
           A SS HVPKFGNWDTDDVPYTICFENA ELRAAG+TFDPNDPDTYPPE F  A H     
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 64  ------EHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLK------KSKENGVEGI 123
                 +H RRPR+QPNR+R    +SGSEKLSSERSGS+Y+LLK      K   NGV+GI
Sbjct: 63  DRRRHHDHHRRPREQPNRDR---RSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGI 122

Query: 124 SRLAPAVAGHGVNPKP----------VTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQ 183
           SR  P  AGHG NP P          + ASVPKFGSWDA+DPKSGDGYTAIFNK+K+EK+
Sbjct: 123 SRFPPTAAGHGGNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKK 182

Query: 184 IAASN-PQAVPPLMNKTK-QPIAHTNTTSGFTSFASKV 196
           I  SN  QAVPPL N+TK QPI       G TSF SKV
Sbjct: 183 IGGSNSSQAVPPLTNQTKQQPI--PQIVHGSTSFVSKV 215

[Close]

BLAST of CmaCh18G005850.1 vs. ExPASy TrEMBL
Match: A0A5A7UH42 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001090 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.6e-58
Identity = 130/216 (60.19%), Postives = 147/216 (68.06%), Query Frame = 0


Query: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60
           MAG  SS HVPKFGNWD+DDVPYTI FENAREL+AAG+TFDPNDPDTYPP VF       
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALL-------KKSKENGVEGISRLA 120
            +H R    + + +R  I+NSGSEKLSSERS S+YALL       KK   NG EG+SR +
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PAVAGHGVNPKP---------VTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAAS- 180
           P       N  P         + ASVPKFGSWD +DPKSGDGYTAIFNK+KIEKQI  S 
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 NPQAVPPLMNKTKQPIAHT----NTTSGFTSFASKV 196
           NPQ VPPLMN+TKQP+  T     +T G TSF SKV
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKV 216

[Close]

BLAST of CmaCh18G005850.1 vs. ExPASy TrEMBL
Match: A0A1S3C9P5 (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.1e-58
Identity = 129/216 (59.72%), Postives = 147/216 (68.06%), Query Frame = 0


Query: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60
           MAG  SS HVPKFGNWD+DDVPYTI FENAREL+AAG+TFDPNDPDTYPP VF       
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALL-------KKSKENGVEGISRLA 120
            +H R    + + +R  I+NSGSEKLSSERS S+YALL       KK   NG EG+SR +
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PAVAGHGVNPKP---------VTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAAS- 180
           P       N  P         + ASVPKFGSWD +DPKSGDGYTAIFNK+KIEKQI  S 
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 NPQAVPPLMNKTKQPIAHT----NTTSGFTSFASKV 196
           NPQ VPPLMN+TKQP+  T     +T G TSF SK+
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKI 216

[Close]

BLAST of CmaCh18G005850.1 vs. NCBI nr
Match: XP_022994302.1 (RPM1-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 396.0 bits (1016), Expect = 1.9e-106
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60
           MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG
Sbjct: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60

Query: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180
           VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA
Sbjct: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180

Query: 181 HTNTTSGFTSFASKV 196
           HTNTTSGFTSFASK+
Sbjct: 181 HTNTTSGFTSFASKI 195

[Close]

BLAST of CmaCh18G005850.1 vs. NCBI nr
Match: KAG6573489.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012628.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.0 bits (959), Expect = 7.9e-100
Identity = 185/197 (93.91%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60
           MAGANSS HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKP AH+G
Sbjct: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGA++NSGSEKLSSERSGS+YALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180
            NP    ASVPKFGSWDA+DPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA
Sbjct: 121 GNP----ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180

Query: 181 HTNTTSGFTSFASKVPT 198
           HTNTTSGFTSFASKVPT
Sbjct: 181 HTNTTSGFTSFASKVPT 193

[Close]

BLAST of CmaCh18G005850.1 vs. NCBI nr
Match: XP_023525812.1 (RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.9 bits (943), Expect = 5.6e-98
Identity = 182/195 (93.33%), Postives = 188/195 (96.41%), Query Frame = 0


Query: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60
           MAGANSS HVPKFGNWDTDDVPYTICFENARELRAAGI FDPNDPDTYPPEVFKPAAH+G
Sbjct: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGINFDPNDPDTYPPEVFKPAAHDG 60

Query: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAI+NSGSEKLSSERSGS+YALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180
            NP    ASVPKFGSWDA+DPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNK+KQPIA
Sbjct: 121 GNP----ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKSKQPIA 180

Query: 181 HTNTTSGFTSFASKV 196
           HTNTTSGFTSFASK+
Sbjct: 181 HTNTTSGFTSFASKI 191

[Close]

BLAST of CmaCh18G005850.1 vs. NCBI nr
Match: XP_022955116.1 (RPM1-interacting protein 4-like [Cucurbita moschata])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 181/195 (92.82%), Postives = 187/195 (95.90%), Query Frame = 0


Query: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60
           MAGA SS HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKP AH+G
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAI+NSGSEKLSSERSGS+YALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180
            NP    ASVPKFGSWDA+DPKSGDGYTAIFNKMKIEKQIAASNPQ+VPPLMNKTKQPIA
Sbjct: 121 GNP----ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIA 180

Query: 181 HTNTTSGFTSFASKV 196
           HTNTTSGFTSFASK+
Sbjct: 181 HTNTTSGFTSFASKI 191

[Close]

BLAST of CmaCh18G005850.1 vs. NCBI nr
Match: XP_022142617.1 (RPM1-interacting protein 4-like [Momordica charantia])

HSP 1 Score: 249.2 bits (635), Expect = 2.9e-62
Identity = 140/218 (64.22%), Postives = 154/218 (70.64%), Query Frame = 0


Query: 4   ANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNGG-- 63
           A SS HVPKFGNWDTDDVPYTICFENA ELRAAG+TFDPNDPDTYPPE F  A H     
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 64  ------EHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLK------KSKENGVEGI 123
                 +H RRPR+QPNR+R    +SGSEKLSSERSGS+Y+LLK      K   NGV+GI
Sbjct: 63  DRRRHHDHHRRPREQPNRDR---RSSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGI 122

Query: 124 SRLAPAVAGHGVNPKP----------VTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQ 183
           SR  P  AGHG NP P          + ASVPKFGSWDA+DPKSGDGYTAIFNK+K+EK+
Sbjct: 123 SRFPPTAAGHGGNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKK 182

Query: 184 IAASN-PQAVPPLMNKTK-QPIAHTNTTSGFTSFASKV 196
           I  SN  QAVPPL N+TK QPI       G TSF SKV
Sbjct: 183 IGGSNSSQAVPPLTNQTKQQPI--PQIVHGSTSFVSKV 215

[Close]

BLAST of CmaCh18G005850.1 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-15
Identity = 71/209 (33.97%), Postives = 95/209 (45.45%), Query Frame = 0


Query: 9   HVPKFGNWDTDD-VPYTICFENARELRAAGI-TFDPNDPD----------TYPPEV-FKP 68
           +VPKFGNW+ ++ VPYT  F+ AR+ RA G    +PNDP+           +PP    KP
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 69  ----AAHNGGEHQRRPRQQPNRERGAIMNSGSE-------KLSSERSGSNYALLKKSKEN 128
                     EH R   +   ++ G    S +E       + S   S  N + L K+  +
Sbjct: 65  EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYD 124

Query: 129 GVEGISRLAPAVAGHGVNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAA-- 188
           G  G SR  P       +P+ VT  VPKFG WD  +P S DGYT IFNK++ E+   A  
Sbjct: 125 GT-GKSRPKPTNLRADESPEKVTV-VPKFGDWDENNPSSADGYTHIFNKVREERSSGANV 184

Query: 189 SNPQAVPPLMNKTKQPIAHTNTTSGFTSF 192
           S     P     T Q   + N TS    F
Sbjct: 185 SGSSRTP-----THQSSRNPNNTSSCCCF 206

[Close]

BLAST of CmaCh18G005850.1 vs. TAIR 10
Match: AT3G07195.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.7e-05
Identity = 53/184 (28.80%), Postives = 71/184 (38.59%), Query Frame = 0


Query: 9   HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNGGEHQR--- 68
           HVPKFG+W+  D P+T+ F+NAR  +   +      P+T P E+  P        Q+   
Sbjct: 6   HVPKFGDWNNQDQPFTVVFDNARTNKRQDLYESIEKPETKPQELAPPPPQPARRIQKPEA 65

Query: 69  -------RPRQQPNRERGAIMNSGSEKL-------SSERSGSNYA-LLKKSKENGVEGIS 128
                   PR  P  E+  +    +++L          RSGS  A  L      G  G  
Sbjct: 66  PKPVKQDTPRAPPPTEKNRVKAPPADQLYGGGGSGGGGRSGSGSAGGLYGGYGGGSVGNQ 125

Query: 129 RLAPAV--------AGHGVNPKPVTASVPKFGSWDAKDPKSGD-GYTAIFNKMKIEKQIA 166
           R  PA            G N +  T   P  GS  A     GD  YT IF K+K E+   
Sbjct: 126 RQPPAPRPTQPRQNLRGGNNGRGGTTIPPFPGSVGA----GGDMSYTQIFEKVKEERNEG 185

[Close]

BLAST of CmaCh18G005850.1 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 45.1 bits (105), Expect = 7.8e-05
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 130 VPKFGSWDAKDPKSGDGYTAIFNKMKIEKQ 160
           +PKFG WD  DP S +G+T IFNK + EK+
Sbjct: 8   LPKFGEWDVNDPSSAEGFTVIFNKARNEKK 37

[Close]

BLAST of CmaCh18G005850.1 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 130 VPKFGSWDAKDPKSGDGYTAIFNKMKIEKQ 160
           +PKFG WD  DP S +G+T IFNK + EK+
Sbjct: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKK 37

[Close]

BLAST of CmaCh18G005850.1 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 130 VPKFGSWDAKDPKSGDGYTAIFNKMKIEKQ 160
           +PKFG WD  DP S +G+T IFNK + EK+
Sbjct: 24  LPKFGEWDVNDPASAEGFTVIFNKARDEKK 53

The following BLAST results are available for this feature:

BLAST of CmaCh18G005850.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYN5	4.0e-14	33.97	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]
Q8S3M3	9.9e-05	35.59	NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1	[more]

BLAST of CmaCh18G005850.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVE9	9.4e-107	99.49	RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4...	[more]
A0A6J1GSU2	8.0e-98	92.82	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE...	[more]
A0A6J1CND0	1.4e-62	64.22	RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 P...	[more]
A0A5A7UH42	1.6e-58	60.19	RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C9P5	2.1e-58	59.72	RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=...	[more]

BLAST of CmaCh18G005850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994302.1	1.9e-106	99.49	RPM1-interacting protein 4-like [Cucurbita maxima]	[more]
KAG6573489.1	7.9e-100	93.91	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_023525812.1	5.6e-98	93.33	RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022955116.1	1.6e-97	92.82	RPM1-interacting protein 4-like [Cucurbita moschata]	[more]
XP_022142617.1	2.9e-62	64.22	RPM1-interacting protein 4-like [Momordica charantia]	[more]

BLAST of CmaCh18G005850.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25070.1	2.9e-15	33.97	RPM1 interacting protein 4	[more]
AT3G07195.1	2.7e-05	28.80	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	7.8e-05	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.1	1.0e-04	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	1.0e-04	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 128..159 e-value: 3.0E-14 score: 52.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..197
None	No IPR available	PANTHER	PTHR33159:SF49	OS06G0636100 PROTEIN	coord: 67..185
None	No IPR available	PANTHER	PTHR33159:SF49	OS06G0636100 PROTEIN	coord: 7..90
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 67..185 coord: 7..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh18G005850	CmaCh18G005850	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G005850.1:exon:42	CmaCh18G005850.1:exon:42	exon
CmaCh18G005850.1:exon:41	CmaCh18G005850.1:exon:41	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G005850.1:cds	CmaCh18G005850.1:cds_2	CDS
CmaCh18G005850.1:cds	CmaCh18G005850.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh18G005850.1	CmaCh18G005850.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane