CmaCh18G005770.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G005770.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ATP synthase subunit alpha, chloroplastic
Location	Cma_Chr18: 3886148 .. 3886663 (+)
Sequence length	219
RNA-Seq Expression	CmaCh18G005770.1
Synteny	CmaCh18G005770.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACTCCGCGAGGGGGGCCATTGAACAGCTGGAAAAAGTCTGGGCCTGCTTACGAAAAGTCGAAATGGAAGCGGATCAGTTTAGAGTGAATGAATACTCTGAGATAGAATGAGAAAAATGGAATTTGATTAGTTCAACTTCTAAAAGTTTGGAACAATTAGAAAATTAGGAAAATGAAACATTTGTTTTGAACACCAAAAAGCCATTAATCAAGTACGACAACAGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGTTGTTTGAACAACGAGCTACGTTTACGTACCATCAATGCTAATATTTCCATTTCAAGCAAATGAAATTAGTAATATTATTCGTGAACGTATTGAGCAATATAATAGAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTGCTATAGGCATAGCTCTAAATTGA

mRNA sequence

ATGAAGAACTCCGCGAGGGGGGCCATTGAACAGCTGGAAAAAGTCTGGGCCTGCTTACGAAAAGTCGAAATGGAAGCGGATCAAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTGCTATAGGCATAGCTCTAAATTGA

Coding sequence (CDS)

ATGAAGAACTCCGCGAGGGGGGCCATTGAACAGCTGGAAAAAGTCTGGGCCTGCTTACGAAAAGTCGAAATGGAAGCGGATCAAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTGCTATAGGCATAGCTCTAAATTGA

Protein sequence

MKNSARGAIEQLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN

Homology

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy Swiss-Prot
Match: A4QJA0 (ATP synthase subunit alpha, chloroplastic OS=Aethionema cordifolium OX=434059 GN=atpA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy Swiss-Prot
Match: A4QJI4 (ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=atpA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy Swiss-Prot
Match: Q49L13 (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy Swiss-Prot
Match: B1NWD5 (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta OX=3983 GN=atpA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy Swiss-Prot
Match: B0Z4N2 (ATP synthase subunit alpha, chloroplastic OS=Oenothera argillicola OX=3940 GN=atpA PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy TrEMBL
Match: A0A445A147 (ATP-synt_ab_N domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g065254 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.0e-19
Identity = 59/86 (68.60%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 7   GAIEQLEKVWACLRKVEMEADQ--------------------EVKIVNTGIVLQVGDDIA 66
           GA+EQLEKV ACLRKVEMEADQ                    +V IVNTG VLQVGDDIA
Sbjct: 37  GALEQLEKVRACLRKVEMEADQFRVNDEISKIICERIEQYNIKVNIVNTGTVLQVGDDIA 96

Query: 67  RIYGLDEVMAGSLVEFEEGAIGIALN 73
           RIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 97  RIYGLDEVMAGELVEFEEGTIGIALN 122

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy TrEMBL
Match: A0A6A6LMU7 (Sm domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_018446 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGDDIARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDDIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy TrEMBL
Match: A0A7S6PWK9 (ATP synthase CF1 alpha subunit OS=Eriophyton wallichii OX=694358 GN=atpA PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q +++   LR+   + ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QADEISTILRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy TrEMBL
Match: A0A2K9RJU3 (ATP synthase subunit alpha OS=Lamium galeobdolon OX=53161 GN=atpA PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q +++   LR+   + ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QADEISTILRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770.1 vs. ExPASy TrEMBL
Match: A0A2K9RJL1 (ATP synthase subunit alpha OS=Lamium album OX=53159 GN=atpA PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q +++   LR+   + ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QADEISTILRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770.1 vs. NCBI nr
Match: RYR20163.1 (hypothetical protein Ahy_B03g065254 [Arachis hypogaea])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 59/86 (68.60%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 7   GAIEQLEKVWACLRKVEMEADQ--------------------EVKIVNTGIVLQVGDDIA 66
           GA+EQLEKV ACLRKVEMEADQ                    +V IVNTG VLQVGDDIA
Sbjct: 37  GALEQLEKVRACLRKVEMEADQFRVNDEISKIICERIEQYNIKVNIVNTGTVLQVGDDIA 96

Query: 67  RIYGLDEVMAGSLVEFEEGAIGIALN 73
           RIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 97  RIYGLDEVMAGELVEFEEGTIGIALN 122

[Close]

BLAST of CmaCh18G005770.1 vs. NCBI nr
Match: KAF2300939.1 (hypothetical protein GH714_018446 [Hevea brasiliensis])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EVKIVNTG VLQVGDDIARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVKIVNTGTVLQVGDDIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770.1 vs. NCBI nr
Match: YP_009461106.1 (ATP synthase CF1 alpha subunit [Lamium galeobdolon] >AUT82405.1 ATP synthase CF1 alpha subunit [Lamium galeobdolon])

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q +++   LR+   + ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QADEISTILRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770.1 vs. NCBI nr
Match: YP_009461017.1 (ATP synthase CF1 alpha subunit [Lamium album] >YP_010029758.1 ATP synthase CF1 alpha subunit [Eriophyton wallichii] >AUT82316.1 ATP synthase CF1 alpha subunit [Lamium album] >QGX04479.1 ATP synthase CF1 alpha subunit [Lamium takeshimense] >QOU11442.1 ATP synthase CF1 alpha subunit [Eriophyton wallichii])

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q +++   LR+   + ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QADEISTILRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770.1 vs. NCBI nr
Match: QVL26013.1 (ATP synthase CF1 alpha subunit [Lamium amplexicaule])

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 11 QLEKVWACLRKVEMEADQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIA 70
          Q +++   LR+   + ++EVKIVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIA
Sbjct: 5  QADEISTILRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIA 64

Query: 71 LN 73
          LN
Sbjct: 65 LN 66

[Close]

BLAST of CmaCh18G005770.1 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 77.0 bits (188), Expect = 6.8e-15
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 27 DQEVKIVNTGIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          ++EV IVNTG VLQVGD IARIYGLDEVMAG LVEFEEG IGIALN
Sbjct: 21 NREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh18G005770.1 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.4e-05
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 36  GIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
           G V+ VGD IA++YGL+E+ AG +V F  G  G+ALN
Sbjct: 301 GRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALN 337

[Close]

BLAST of CmaCh18G005770.1 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 43.9 bits (102), Expect = 6.4e-05
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 36 GIVLQVGDDIARIYGLDEVMAGSLVEFEEGAIGIALN 73
          G V+ VGD IA++YGL+E+ AG +V F  G  G+ALN
Sbjct: 31 GRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALN 67

The following BLAST results are available for this feature:

BLAST of CmaCh18G005770.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QJA0	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Aethionema cordifolium OX=434059 GN...	[more]
A4QJI4	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN...	[more]
Q49L13	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus...	[more]
B1NWD5	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta OX=3983 GN=atpA P...	[more]
B0Z4N2	1.9e-14	86.96	ATP synthase subunit alpha, chloroplastic OS=Oenothera argillicola OX=3940 GN=at...	[more]

BLAST of CmaCh18G005770.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445A147	6.0e-19	68.60	ATP-synt_ab_N domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g0...	[more]
A0A6A6LMU7	1.1e-12	89.13	Sm domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_018446 PE=3 ...	[more]
A0A7S6PWK9	1.4e-12	69.35	ATP synthase CF1 alpha subunit OS=Eriophyton wallichii OX=694358 GN=atpA PE=4 SV...	[more]
A0A2K9RJU3	1.4e-12	69.35	ATP synthase subunit alpha OS=Lamium galeobdolon OX=53161 GN=atpA PE=3 SV=1	[more]
A0A2K9RJL1	1.4e-12	69.35	ATP synthase subunit alpha OS=Lamium album OX=53159 GN=atpA PE=3 SV=1	[more]

BLAST of CmaCh18G005770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RYR20163.1	1.2e-18	68.60	hypothetical protein Ahy_B03g065254 [Arachis hypogaea]	[more]
KAF2300939.1	2.3e-12	89.13	hypothetical protein GH714_018446 [Hevea brasiliensis]	[more]
YP_009461106.1	3.0e-12	69.35	ATP synthase CF1 alpha subunit [Lamium galeobdolon] >AUT82405.1 ATP synthase CF1...	[more]
YP_009461017.1	3.0e-12	69.35	ATP synthase CF1 alpha subunit [Lamium album] >YP_010029758.1 ATP synthase CF1 a...	[more]
QVL26013.1	3.0e-12	69.35	ATP synthase CF1 alpha subunit [Lamium amplexicaule]	[more]

BLAST of CmaCh18G005770.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00120.1	6.8e-15	84.78	ATP synthase subunit alpha	[more]
AT2G07698.1	6.4e-05	54.05	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	6.4e-05	54.05	ATP synthase subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	GENE3D	2.40.30.20		coord: 7..72 e-value: 3.7E-15 score: 57.4
IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 35..72 e-value: 2.1E-6 score: 28.1
None	No IPR available	PANTHER	PTHR48082:SF5	ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC	coord: 17..72
None	No IPR available	PANTHER	PTHR48082	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 17..72
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 21..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh18G005770	CmaCh18G005770	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G005770.1:exon:446	CmaCh18G005770.1:exon:446	exon
CmaCh18G005770.1:exon:445	CmaCh18G005770.1:exon:445	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G005770.1:cds	CmaCh18G005770.1:cds	CDS
CmaCh18G005770.1:cds	CmaCh18G005770.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh18G005770.1	CmaCh18G005770.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0000932	P-body
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism