CmaCh18G003860.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G003860.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionethylene-responsive transcription factor 12-like
LocationCma_Chr18: 2109848 .. 2110327 (+)
Sequence length480
RNA-Seq ExpressionCmaCh18G003860.1
SyntenyCmaCh18G003860.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACTCGCGACGGTCACTACAGAGGCGTCCGGAAGCGCCCTTGGGGTCGCTACGCCGCCGAGATTCGCGACCCATGGAAGAAGACCCGTGTCTGGTTGGGTACTTTCGACACCCCTGAAGAAGCCGCCCTTGCTTACGACGGCGCTGCTCGCTCCCTCCGCGGTTCCAAGGCTAAAACTAACTTTCCTCTGCCTCTCTCCGCCGCCGGCCTCTGTTTCGACCTCAACGTTTCTCGACCCACTGCTTCACCCTCCTCCACCTCCTCCTCCTCCTCCTCTGCTCGTCTTCTCCTCGGTGATTTTCTCCGCCATGGCGCTCCTCGCCACAAGATGTGTAATGTGGATGTCGAGGTGTCTCCGGTGCTTGTCGATTCCAGCGCTCCGACGCCGCCGTCCAGTACGGCGTCGTTTATTGGGCATGTGCGGCGTGTTCTACCCTTTGATCTCAATGAGCCTCCGCCGGTGTGGCTGTGA

mRNA sequence

ATGGCTTCCACTCGCGACGGTCACTACAGAGGCGTCCGGAAGCGCCCTTGGGGTCGCTACGCCGCCGAGATTCGCGACCCATGGAAGAAGACCCGTGTCTGGTTGGGTACTTTCGACACCCCTGAAGAAGCCGCCCTTGCTTACGACGGCGCTGCTCGCTCCCTCCGCGGTTCCAAGGCTAAAACTAACTTTCCTCTGCCTCTCTCCGCCGCCGGCCTCTGTTTCGACCTCAACGTTTCTCGACCCACTGCTTCACCCTCCTCCACCTCCTCCTCCTCCTCCTCTGCTCGTCTTCTCCTCGGTGATTTTCTCCGCCATGGCGCTCCTCGCCACAAGATGTGTAATGTGGATGTCGAGGTGTCTCCGGTGCTTGTCGATTCCAGCGCTCCGACGCCGCCGTCCAGTACGGCGTCGTTTATTGGGCATGTGCGGCGTGTTCTACCCTTTGATCTCAATGAGCCTCCGCCGGTGTGGCTGTGA

Coding sequence (CDS)

ATGGCTTCCACTCGCGACGGTCACTACAGAGGCGTCCGGAAGCGCCCTTGGGGTCGCTACGCCGCCGAGATTCGCGACCCATGGAAGAAGACCCGTGTCTGGTTGGGTACTTTCGACACCCCTGAAGAAGCCGCCCTTGCTTACGACGGCGCTGCTCGCTCCCTCCGCGGTTCCAAGGCTAAAACTAACTTTCCTCTGCCTCTCTCCGCCGCCGGCCTCTGTTTCGACCTCAACGTTTCTCGACCCACTGCTTCACCCTCCTCCACCTCCTCCTCCTCCTCCTCTGCTCGTCTTCTCCTCGGTGATTTTCTCCGCCATGGCGCTCCTCGCCACAAGATGTGTAATGTGGATGTCGAGGTGTCTCCGGTGCTTGTCGATTCCAGCGCTCCGACGCCGCCGTCCAGTACGGCGTCGTTTATTGGGCATGTGCGGCGTGTTCTACCCTTTGATCTCAATGAGCCTCCGCCGGTGTGGCTGTGA

Protein sequence

MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEVSPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL
Homology
[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy Swiss-Prot
Match: Q94ID6 (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=ERF12 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.7e-35
Identity = 98/194 (50.52%), Postives = 106/194 (54.64%), Query Frame = 0 

Query: 1   MAST---RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRG 60
           MAST   R+ HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAAR LRG
Sbjct: 1   MASTTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRG 60

Query: 61  SKAKTNFPLPLSAAGLCFDLN--VSRPT------------------ASPSSTSSSSSSAR 120
            KAKTNFP PLS      DLN   S P+                  A+P     SS    
Sbjct: 61  IKAKTNFPSPLS-----LDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHH 120

Query: 121 LLLGDFLRHGAPRHKMCNVDVEVSPVLVDSSAPTPPSSTA-SFIGH-----------VRR 160
                FLR G    K  +     +P+   SS  T  SS     +G            VRR
Sbjct: 121 QHHRIFLRTGVLNDKTSDYSSTEAPLYFTSSPNTATSSPGYQVVGFPMMNSSPSPVTVRR 180

[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy Swiss-Prot
Match: Q9C5I3 (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=ERF11 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-25
Identity = 72/154 (46.75%), Postives = 89/154 (57.79%), Query Frame = 0 

Query: 9   YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPLPL 68
           YRGVRKRPWGRYAAEIRDP+KK+RVWLGTFDTPEEAA AYD  A   RG+KAKTNFP   
Sbjct: 20  YRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP--- 79

Query: 69  SAAGLCFDLNVSRPTASPSSTSSS---SSSARLLLGDFLRHGAPRHKMCNVDVEVSPVLV 128
                C+++N    + + S + SS   SS   L LG      + R     + V+   ++ 
Sbjct: 80  -----CYNINAHCLSLTQSLSQSSTVESSFPNLNLGS--DSVSSRFPFPKIQVKAGMMVF 139

Query: 129 DSSAPTPPSSTASFIGHV---RRVLPFDLNEPPP 157
           D  + +  SS    +      R VL  DLN PPP
Sbjct: 140 DERSESDSSSVVMDVVRYEGRRVVLDLDLNFPPP 163

[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy Swiss-Prot
Match: Q9SXS8 (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-24
Identity = 78/189 (41.27%), Postives = 96/189 (50.79%), Query Frame = 0 

Query: 4   TRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTN 63
           +++  +RGVRKRPWGR+AAEIRDPWKKTRVWLGTFD+ E+AA AYD AAR+LRG KAKTN
Sbjct: 23  SKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTN 82

Query: 64  FPLPLSAAGLCFDLN---------------VSRPTASPSSTSSSSSSARLLLGDFLRHGA 123
           FPLP  A    F+                    P  S   TSSS SS            A
Sbjct: 83  FPLPY-AHHHQFNQGHNPNNDPFVDSRFYPQDNPIISQRPTSSSMSSTVESFSGPRPPPA 142

Query: 124 PRHKMCNVDVEV--SPVLVDSSAPTPPSSTASFIGH------------------VRRVLP 158
           PR +      +   SP +V     +   S++S + H                   R+ L 
Sbjct: 143 PRQQTTASSRKYTRSPPVVPDDCHSDCDSSSSVVDHGDCEKENDNDNDNIASSSFRKPLL 202

[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy Swiss-Prot
Match: Q9FE67 (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=ERF9 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-24
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 5  RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNF 64
          ++ H+RGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RGSKAKTNF
Sbjct: 29 KEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88

Query: 65 PLP 68
          PLP
Sbjct: 89 PLP 91

[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy Swiss-Prot
Match: Q9LW49 (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ERF4 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-23
Identity = 59/90 (65.56%), Postives = 63/90 (70.00%), Query Frame = 0 

Query: 5   RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNF 64
           ++ HYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT EEAA AYD AAR  RG KAKTNF
Sbjct: 23  KEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82

Query: 65  PLPLSAAGLCFDLNVSRPTASPSSTSSSSS 95
           PLP               + S SST  SSS
Sbjct: 83  PLP-----------SENQSTSHSSTMESSS 101

[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy TrEMBL
Match: A0A6J1K1B3 (ethylene-responsive transcription factor 12-like OS=Cucurbita maxima OX=3661 GN=LOC111490195 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.9e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV 120
           KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV
Sbjct: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV 120

Query: 121 SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL
Sbjct: 121 SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 159

[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy TrEMBL
Match: A0A6J1GRG6 (ethylene-responsive transcription factor 12-like OS=Cucurbita moschata OX=3662 GN=LOC111456849 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MAS RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASARDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV 120
           KTNFPLPLSAAGLCFDLNVSRPTASP    SSSSSARLLLGDFLRHGAPRH+MCNVDVEV
Sbjct: 61  KTNFPLPLSAAGLCFDLNVSRPTASP----SSSSSARLLLGDFLRHGAPRHEMCNVDVEV 120

Query: 121 SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           SPVLVDSSAPTPPS+TASFIGHVRRVLPFDLNEPPPVWL
Sbjct: 121 SPVLVDSSAPTPPSNTASFIGHVRRVLPFDLNEPPPVWL 155

[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy TrEMBL
Match: A0A5D3DSV2 (Ethylene-responsive transcription factor 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00990 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.7e-62
Identity = 129/166 (77.71%), Postives = 140/166 (84.34%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTR+GHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASP------SSTSSSSSSARLLLGDFLRHGAPRHKMC 120
           KTNFP PL   GL  DLNVS P  +P      SS+SSSSSSAR LLGDFLRHG  R+ MC
Sbjct: 61  KTNFPPPL--PGLSLDLNVSGPWPTPTSAPPCSSSSSSSSSARFLLGDFLRHGV-RNDMC 120

Query: 121 NVDVE-VSPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           N++V+  SPVLVD+SA    +++ASFIGHVRR LPFDLNEPPPVWL
Sbjct: 121 NLNVDAASPVLVDTSASASSTASASFIGHVRRGLPFDLNEPPPVWL 163

[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy TrEMBL
Match: A0A1S3B631 (ethylene-responsive transcription factor 12 OS=Cucumis melo OX=3656 GN=LOC103486573 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.7e-62
Identity = 129/166 (77.71%), Postives = 140/166 (84.34%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTR+GHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASP------SSTSSSSSSARLLLGDFLRHGAPRHKMC 120
           KTNFP PL   GL  DLNVS P  +P      SS+SSSSSSAR LLGDFLRHG  R+ MC
Sbjct: 61  KTNFPPPL--PGLSLDLNVSGPWPTPTSAPPCSSSSSSSSSARFLLGDFLRHGV-RNDMC 120

Query: 121 NVDVE-VSPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           N++V+  SPVLVD+SA    +++ASFIGHVRR LPFDLNEPPPVWL
Sbjct: 121 NLNVDAASPVLVDTSASASSTASASFIGHVRRGLPFDLNEPPPVWL 163

[Close]
BLAST of CmaCh18G003860.1 vs. ExPASy TrEMBL
Match: A0A0A0LSE4 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G075030 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.7e-61
Identity = 126/167 (75.45%), Postives = 137/167 (82.04%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTR+GHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASP--------SSTSSSSSSARLLLGDFLRHGAPRHK 120
           KTNFP PL   GL  DLNVS P  +P        SS+S S SS R LLGDFLRHG  R+ 
Sbjct: 61  KTNFPPPL--PGLSLDLNVSGPWPTPTSAPPCSSSSSSPSPSSTRFLLGDFLRHGV-RND 120

Query: 121 MCNVDVEVSPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           +CN++V+ SPVLVDSSA    +++ASFIGHVRR LPFDLNEPPPVWL
Sbjct: 121 ICNLNVDASPVLVDSSASGSSTASASFIGHVRRGLPFDLNEPPPVWL 164

[Close]
BLAST of CmaCh18G003860.1 vs. NCBI nr
Match: XP_022994485.1 (ethylene-responsive transcription factor 12-like [Cucurbita maxima])

HSP 1 Score: 328.2 bits (840), Expect = 4.0e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV 120
           KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV
Sbjct: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV 120

Query: 121 SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL
Sbjct: 121 SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 159

[Close]
BLAST of CmaCh18G003860.1 vs. NCBI nr
Match: KAG6573284.1 (Ethylene-responsive transcription factor 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.0 bits (811), Expect = 9.2e-83
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MAS RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASARDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV 120
           KTNFPLPLSAAGLCFDLNVSRPTASPSST SSSSSARLLLGDFLRHGAPRH MCNVDVEV
Sbjct: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSST-SSSSSARLLLGDFLRHGAPRHDMCNVDVEV 120

Query: 121 SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           SPVLVDSSAPTPPS+TASFIGHVRRVLPFDLNEPPPVWL
Sbjct: 121 SPVLVDSSAPTPPSNTASFIGHVRRVLPFDLNEPPPVWL 158

[Close]
BLAST of CmaCh18G003860.1 vs. NCBI nr
Match: KAG7012449.1 (Ethylene-responsive transcription factor 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.1 bits (806), Expect = 3.5e-82
Identity = 154/159 (96.86%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MAS RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASARDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV 120
           KTNFPLPLS AGLCFDLNVSRPTASPSST SSSSSARLLLGDFLRHGAPRH MCNVDVEV
Sbjct: 61  KTNFPLPLSPAGLCFDLNVSRPTASPSST-SSSSSARLLLGDFLRHGAPRHDMCNVDVEV 120

Query: 121 SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           SPVLVDSSAPTPPS+TASFIGHVRRVLPFDLNEPPPVWL
Sbjct: 121 SPVLVDSSAPTPPSNTASFIGHVRRVLPFDLNEPPPVWL 158

[Close]
BLAST of CmaCh18G003860.1 vs. NCBI nr
Match: XP_023542410.1 (ethylene-responsive transcription factor 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314.7 bits (805), Expect = 4.6e-82
Identity = 154/160 (96.25%), Postives = 156/160 (97.50%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MAS RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASARDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSST-SSSSSSARLLLGDFLRHGAPRHKMCNVDVE 120
           KTNFPLPLSAAGLCFDLNVSRPTASPSST SSSSSSARLLLGDFLRH APRH+MCNVDVE
Sbjct: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSSARLLLGDFLRHNAPRHEMCNVDVE 120

Query: 121 VSPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           VSPVLVDSSAPTPP +TASFIGHVRRVLPFDLNEPPPVWL
Sbjct: 121 VSPVLVDSSAPTPPPNTASFIGHVRRVLPFDLNEPPPVWL 160

[Close]
BLAST of CmaCh18G003860.1 vs. NCBI nr
Match: XP_022954651.1 (ethylene-responsive transcription factor 12-like [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 3.0e-81
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 0 

Query: 1   MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MAS RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASARDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLLGDFLRHGAPRHKMCNVDVEV 120
           KTNFPLPLSAAGLCFDLNVSRPTASP    SSSSSARLLLGDFLRHGAPRH+MCNVDVEV
Sbjct: 61  KTNFPLPLSAAGLCFDLNVSRPTASP----SSSSSARLLLGDFLRHGAPRHEMCNVDVEV 120

Query: 121 SPVLVDSSAPTPPSSTASFIGHVRRVLPFDLNEPPPVWL 160
           SPVLVDSSAPTPPS+TASFIGHVRRVLPFDLNEPPPVWL
Sbjct: 121 SPVLVDSSAPTPPSNTASFIGHVRRVLPFDLNEPPPVWL 155

[Close]
BLAST of CmaCh18G003860.1 vs. TAIR 10
Match: AT1G28360.1 (ERF domain protein 12 )

HSP 1 Score: 148.7 bits (374), Expect = 4.0e-36
Identity = 98/194 (50.52%), Postives = 106/194 (54.64%), Query Frame = 0 

Query: 1   MAST---RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRG 60
           MAST   R+ HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAAR LRG
Sbjct: 1   MASTTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRG 60

Query: 61  SKAKTNFPLPLSAAGLCFDLN--VSRPT------------------ASPSSTSSSSSSAR 120
            KAKTNFP PLS      DLN   S P+                  A+P     SS    
Sbjct: 61  IKAKTNFPSPLS-----LDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHH 120

Query: 121 LLLGDFLRHGAPRHKMCNVDVEVSPVLVDSSAPTPPSSTA-SFIGH-----------VRR 160
                FLR G    K  +     +P+   SS  T  SS     +G            VRR
Sbjct: 121 QHHRIFLRTGVLNDKTSDYSSTEAPLYFTSSPNTATSSPGYQVVGFPMMNSSPSPVTVRR 180

[Close]
BLAST of CmaCh18G003860.1 vs. TAIR 10
Match: AT1G28370.1 (ERF domain protein 11 )

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-26
Identity = 72/154 (46.75%), Postives = 89/154 (57.79%), Query Frame = 0 

Query: 9   YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPLPL 68
           YRGVRKRPWGRYAAEIRDP+KK+RVWLGTFDTPEEAA AYD  A   RG+KAKTNFP   
Sbjct: 20  YRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP--- 79

Query: 69  SAAGLCFDLNVSRPTASPSSTSSS---SSSARLLLGDFLRHGAPRHKMCNVDVEVSPVLV 128
                C+++N    + + S + SS   SS   L LG      + R     + V+   ++ 
Sbjct: 80  -----CYNINAHCLSLTQSLSQSSTVESSFPNLNLGS--DSVSSRFPFPKIQVKAGMMVF 139

Query: 129 DSSAPTPPSSTASFIGHV---RRVLPFDLNEPPP 157
           D  + +  SS    +      R VL  DLN PPP
Sbjct: 140 DERSESDSSSVVMDVVRYEGRRVVLDLDLNFPPP 163

[Close]
BLAST of CmaCh18G003860.1 vs. TAIR 10
Match: AT5G44210.1 (erf domain protein 9 )

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 5  RDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNF 64
          ++ H+RGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RGSKAKTNF
Sbjct: 29 KEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88

Query: 65 PLP 68
          PLP
Sbjct: 89 PLP 91

[Close]
BLAST of CmaCh18G003860.1 vs. TAIR 10
Match: AT1G50640.1 (ethylene responsive element binding factor 3 )

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-24
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 3  STRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKT 62
          S ++  +RGVRKRPWGR+AAEIRDPWKK RVWLGTFD+ EEAA AYD AAR+LRG KAKT
Sbjct: 22 SVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKT 81

Query: 63 NFPLPLSA 71
          NFP+  S+
Sbjct: 82 NFPIDSSS 89

[Close]
BLAST of CmaCh18G003860.1 vs. TAIR 10
Match: AT3G15210.1 (ethylene responsive element binding factor 4 )

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-23
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 3   STRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKT 62
           + ++  YRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RG+KAKT
Sbjct: 19  NAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKT 78

Query: 63  NFPLPLSAAGLCFDLNVSRPTASPSSTSSSSSSARLLL 101
           NFP  L  +        +R + S SST   +S   L++
Sbjct: 79  NFPTFLELSDQKVPTGFAR-SPSQSSTLDCASPPTLVV 115

The following BLAST results are available for this feature:
BLAST of CmaCh18G003860.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94ID65.7e-3550.52Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=E... [more]
Q9C5I33.1e-2546.75Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=E... [more]
Q9SXS81.6e-2441.27Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 ... [more]
Q9FE671.6e-2484.13Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=ER... [more]
Q9LW491.7e-2365.56Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ER... [more]
BLAST of CmaCh18G003860.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K1B31.9e-86100.00ethylene-responsive transcription factor 12-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1GRG61.4e-8195.60ethylene-responsive transcription factor 12-like OS=Cucurbita moschata OX=3662 G... [more]
A0A5D3DSV25.7e-6277.71Ethylene-responsive transcription factor 12 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3B6315.7e-6277.71ethylene-responsive transcription factor 12 OS=Cucumis melo OX=3656 GN=LOC103486... [more]
A0A0A0LSE43.7e-6175.45AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G075030 PE=... [more]
BLAST of CmaCh18G003860.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022994485.14.0e-86100.00ethylene-responsive transcription factor 12-like [Cucurbita maxima][more]
KAG6573284.19.2e-8397.48Ethylene-responsive transcription factor 12, partial [Cucurbita argyrosperma sub... [more]
KAG7012449.13.5e-8296.86Ethylene-responsive transcription factor 12, partial [Cucurbita argyrosperma sub... [more]
XP_023542410.14.6e-8296.25ethylene-responsive transcription factor 12-like [Cucurbita pepo subsp. pepo][more]
XP_022954651.13.0e-8195.60ethylene-responsive transcription factor 12-like [Cucurbita moschata][more]
BLAST of CmaCh18G003860.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G28360.14.0e-3650.52ERF domain protein 12 [more]
AT1G28370.12.2e-2646.75ERF domain protein 11 [more]
AT5G44210.11.1e-2584.13erf domain protein 9 [more]
AT1G50640.11.6e-2473.53ethylene responsive element binding factor 3 [more]
AT3G15210.12.3e-2359.18ethylene responsive element binding factor 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 31..47
score: 70.59
coord: 9..20
score: 66.67
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 8..71
e-value: 7.5E-37
score: 138.4
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 8..57
e-value: 1.5E-14
score: 53.9
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 8..65
score: 22.760784
IPR001471AP2/ERF domainCDDcd00018AP2coord: 8..65
e-value: 2.65351E-31
score: 105.431
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 8..66
e-value: 1.9E-27
score: 97.2
NoneNo IPR availablePANTHERPTHR31677AP2 DOMAIN CLASS TRANSCRIPTION FACTORcoord: 1..149
NoneNo IPR availablePANTHERPTHR31677:SF116ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKEcoord: 1..149
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 8..66

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh18G003860CmaCh18G003860gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh18G003860.1:exon:1571CmaCh18G003860.1:exon:1571exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh18G003860.1:cdsCmaCh18G003860.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh18G003860.1CmaCh18G003860.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity