CmaCh14G007580.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G007580.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr14: 3782256 .. 3782588 (-)
Sequence length	333
RNA-Seq Expression	CmaCh14G007580.1
Synteny	CmaCh14G007580.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCGCCGCCGCCGCCGCCGCCGCCGCCTCATTCTTCTGCGTTGCCTTGTCCCTGGCTACCCTTTTTGCCTTATCTCCATCAGCCGTCTCTGCAATATCGGCTTCTCCACCTGTTCCGCCTCACAGAGCTTCCCAAAATATGTCTTCGTTTTTCCCATCTCCGGTCGATGGGCGTTCTTCTCCCATTTCTGCTGCTCCGGCGCTGGAATCCGGCGAGTTCATAGGGAAGAGGAGTGGGTCCAATTCTGTGAAGCTCAATCATGGGATCTCAGCTTTTGGTTTGAGTATTTGTAGTGTTTTTGGTTTAAGACTGGTTCTTAACGTTTGA

mRNA sequence

ATGGCTACCGCCGCCGCCGCCGCCGCCGCCGCCTCATTCTTCTGCGTTGCCTTGTCCCTGGCTACCCTTTTTGCCTTATCTCCATCAGCCGTCTCTGCAATATCGGCTTCTCCACCTGTTCCGCCTCACAGAGCTTCCCAAAATATGTCTTCGTTTTTCCCATCTCCGGTCGATGGGCGTTCTTCTCCCATTTCTGCTGCTCCGGCGCTGGAATCCGGCGAGTTCATAGGGAAGAGGAGTGGGTCCAATTCTGTGAAGCTCAATCATGGGATCTCAGCTTTTGGTTTGAGTATTTGTAGTGTTTTTGGTTTAAGACTGGTTCTTAACGTTTGA

Coding sequence (CDS)

ATGGCTACCGCCGCCGCCGCCGCCGCCGCCGCCTCATTCTTCTGCGTTGCCTTGTCCCTGGCTACCCTTTTTGCCTTATCTCCATCAGCCGTCTCTGCAATATCGGCTTCTCCACCTGTTCCGCCTCACAGAGCTTCCCAAAATATGTCTTCGTTTTTCCCATCTCCGGTCGATGGGCGTTCTTCTCCCATTTCTGCTGCTCCGGCGCTGGAATCCGGCGAGTTCATAGGGAAGAGGAGTGGGTCCAATTCTGTGAAGCTCAATCATGGGATCTCAGCTTTTGGTTTGAGTATTTGTAGTGTTTTTGGTTTAAGACTGGTTCTTAACGTTTGA

Protein sequence

MATAAAAAAAASFFCVALSLATLFALSPSAVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISAAPALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV

Homology

[Close]

BLAST of CmaCh14G007580.1 vs. ExPASy TrEMBL
Match: A0A6J1J7U9 (uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.0e-46
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MATAAAAAAAASFFCVALSLATLFALSPSAVSAISASPPVPPHRASQNMSSFFPSPVDGR 60
           MATAAAAAAAASFFCVALSLATLFALSPSAVSAISASPPVPPHRASQNMSSFFPSPVDGR
Sbjct: 1   MATAAAAAAAASFFCVALSLATLFALSPSAVSAISASPPVPPHRASQNMSSFFPSPVDGR 60

Query: 61  SSPISAAPALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 111
           SSPISAAPALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV
Sbjct: 61  SSPISAAPALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 110

[Close]

BLAST of CmaCh14G007580.1 vs. ExPASy TrEMBL
Match: A0A6J1F8A3 (uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC111441775 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 96/108 (88.89%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 7   AAAAASFFCVALSLATLFALSPSAVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISA 66
           A AAA+FFCVALSLA  FA+SP+AVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISA
Sbjct: 2   ATAAAAFFCVALSLAAFFAVSPAAVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISA 61

Query: 67  AP----ALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 111
           AP    ALESGEFIGKRSGSNSVKLNHGISAFGLSICSVF LRL LNV
Sbjct: 62  APAPATALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFSLRLFLNV 109

[Close]

BLAST of CmaCh14G007580.1 vs. ExPASy TrEMBL
Match: A0A5N6QUU6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 9   AAASFFCVALSLATLFAL----SPSAVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPI 68
           A ++ FC ALS+A  FA+    S +    ISASP V P+  S NMSSFFPSP D R    
Sbjct: 2   ATSTKFCAALSMAIFFAILHGRSSTCEPTISASPAVTPYITSPNMSSFFPSPSDQRPPSS 61

Query: 69  SA-------APALESGEFIGKRSGSNSVKLNHGISAFGLSICSV 102
           +A       AP   SGEF+GK S SNSV+   GI+  G+ + S+
Sbjct: 62  AAPPNSEAFAPVPSSGEFVGK-SSSNSVRFRSGITICGVGLVSL 104

[Close]

BLAST of CmaCh14G007580.1 vs. NCBI nr
Match: XP_022983589.1 (uncharacterized protein LOC111482150 [Cucurbita maxima])

HSP 1 Score: 194.1 bits (492), Expect = 6.2e-46
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MATAAAAAAAASFFCVALSLATLFALSPSAVSAISASPPVPPHRASQNMSSFFPSPVDGR 60
           MATAAAAAAAASFFCVALSLATLFALSPSAVSAISASPPVPPHRASQNMSSFFPSPVDGR
Sbjct: 1   MATAAAAAAAASFFCVALSLATLFALSPSAVSAISASPPVPPHRASQNMSSFFPSPVDGR 60

Query: 61  SSPISAAPALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 111
           SSPISAAPALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV
Sbjct: 61  SSPISAAPALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 110

[Close]

BLAST of CmaCh14G007580.1 vs. NCBI nr
Match: XP_022934640.1 (uncharacterized protein LOC111441775 [Cucurbita moschata])

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38
Identity = 96/108 (88.89%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 7   AAAAASFFCVALSLATLFALSPSAVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISA 66
           A AAA+FFCVALSLA  FA+SP+AVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISA
Sbjct: 2   ATAAAAFFCVALSLAAFFAVSPAAVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPISA 61

Query: 67  AP----ALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 111
           AP    ALESGEFIGKRSGSNSVKLNHGISAFGLSICSVF LRL LNV
Sbjct: 62  APAPATALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFSLRLFLNV 109

[Close]

BLAST of CmaCh14G007580.1 vs. NCBI nr
Match: KAE8021266.1 (hypothetical protein FH972_007173 [Carpinus fangiana])

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 9   AAASFFCVALSLATLFAL----SPSAVSAISASPPVPPHRASQNMSSFFPSPVDGRSSPI 68
           A ++ FC ALS+A  FA+    S +    ISASP V P+  S NMSSFFPSP D R    
Sbjct: 2   ATSTKFCAALSMAIFFAILHGRSSTCEPTISASPAVTPYITSPNMSSFFPSPSDQRPPSS 61

Query: 69  SA-------APALESGEFIGKRSGSNSVKLNHGISAFGLSICSV 102
           +A       AP   SGEF+GK S SNSV+   GI+  G+ + S+
Sbjct: 62  AAPPNSEAFAPVPSSGEFVGK-SSSNSVRFRSGITICGVGLVSL 104

[Close]

BLAST of CmaCh14G007580.1 vs. NCBI nr
Match: XP_021642153.1 (uncharacterized protein LOC110636664 [Hevea brasiliensis])

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-05
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 2   ATAAAAAAAASFFCVALSLATLFA--LSPSAVSAISASPPVPPHRASQNMSSFFPSPVDG 61
           +++++AAAAA     A+SL  LF+  L+ S+   I+ASP V P+  + N+SSFFP+P + 
Sbjct: 11  SSSSSAAAAA-----AVSLVILFSNLLALSSEHMIAASPAVLPYVTAPNISSFFPTPTND 70

Query: 62  RSSPISAA---------PALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLV 108
              P+S+A         P   SGEFIGK S S+S KLN  IS FG+ IC +F +R V
Sbjct: 71  TQWPLSSADPPRSEALEPVPNSGEFIGK-SSSSSPKLNGHISLFGVGICIIFVIRFV 121

[Close]

BLAST of CmaCh14G007580.1 vs. NCBI nr
Match: KAG6621778.1 (hypothetical protein I3842_Q002500 [Carya illinoinensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 9   AAASFFCVALSLATLFALSPSAVS----AISASPPVPPHRASQNMSSFFPSP-VDGRSSP 68
           A  + FC A+S+A +FA+S +  S     ISASP V P+  + NMSSFFPSP V G  S 
Sbjct: 2   ATITNFCAAVSVAIIFAISHATSSTSEPTISASPSVLPYVTAPNMSSFFPSPSVQGPPSS 61

Query: 69  I------SAAPALESGEFIGKRSGSNSVKLNHGISAFGLSICSVFGLRLVLNV 111
                  + AP   SGEF+GK S S+S +L+ GI   G  + S+F   L+L V
Sbjct: 62  TTPPNSETLAPVPSSGEFVGK-SSSDSTRLDSGILISGFGLVSMFMTSLILVV 113

The following BLAST results are available for this feature:

BLAST of CmaCh14G007580.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G007580.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7U9	3.0e-46	100.00	uncharacterized protein LOC111482150 OS=Cucurbita maxima OX=3661 GN=LOC111482150...	[more]
A0A6J1F8A3	1.4e-38	88.89	uncharacterized protein LOC111441775 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A5N6QUU6	4.0e-06	45.19	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007173 PE=4 SV=1	[more]

BLAST of CmaCh14G007580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983589.1	6.2e-46	100.00	uncharacterized protein LOC111482150 [Cucurbita maxima]	[more]
XP_022934640.1	2.8e-38	88.89	uncharacterized protein LOC111441775 [Cucurbita moschata]	[more]
KAE8021266.1	8.2e-06	45.19	hypothetical protein FH972_007173 [Carpinus fangiana]	[more]
XP_021642153.1	5.3e-05	43.59	uncharacterized protein LOC110636664 [Hevea brasiliensis]	[more]
KAG6621778.1	1.2e-04	43.36	hypothetical protein I3842_Q002500 [Carya illinoinensis]	[more]

BLAST of CmaCh14G007580.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh14G007580	CmaCh14G007580	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G007580.1:exon:1016	CmaCh14G007580.1:exon:1016	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G007580.1:cds	CmaCh14G007580.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh14G007580.1	CmaCh14G007580.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane